Tan0021532 (gene) Snake gourd v1

Overview


Name	Tan0021532
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA ligase
Location	LG10: 36666040 .. 36667040 (+)
RNA-Seq Expression	Tan0021532
Synteny	Tan0021532

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTAATTAATTTTAGAAAGTGGTTTTTTTCTGACTTTTTTTATTGTTTATATAAATCATGTCTCTCACATGGATTTTTCTTGCCAAGCTACTATCATCCTTCCCCTTTTCTGCAGATCAATTGTGTTTGTTTCCCGAGAAAACAAATATGGGTCAGAAATCTGTCCTCTCTCTCAGCTTCCTGCTTCTCTTTCTGGGTTTCTCCTTTCTAATTTCTTCCACGGCTGTTCCCTCCACAAGTAAAGCCACTTTTCTTTTTCTTTTTCTTTTTTTTTAATTTAATTTAATTTAATTCTTCCTTTACTAATGAATCTTTGAATTCATTTCTTGCCTACCAGGAATCCTCAAATCAACTTTTGGTCACCCATCTGCCCAAGATTTCGTTTTTCAGGTCTCTCTTTCTCTCTCTATTTTTCTCGAGAAACTTTTTTTTTTTTGCTGTGAAATTTTCTCAGCAACCAAACAGCTTTTGATTGAGAAATTGAAGTCAATTTTAATAGGATGCAAGAGATCATATGAAGATAAGTGGTGGAGATTCATTTGAATTGGTGGAGGAAAGATTGTTTGAAGGAAGAATGGTTTTGGAGAACAATGATTATCCTGGCACAGGGGCAAACAATCACCATGATCCTAAGTCTCCTTCTGCAAAACCATAGTTTTCTCAAAGATCAATAACGATTTTGTTTTTAGTTTCTTTTTCTTTTTTTTTTTTTTTTTGTGTTTTAAATCTTAACTATGCATTTTGAATCTTCACAAAATTTTAGAAATAAAGAGGTTGTTTTTTTTTCAAATTTTAATTCTTTTTCTTTCTATAAATTTGGTTATCAATCAAACAAGAATTGAAAACATAATCGTTATTGGGGTGATTTGTAAACATTAAAAAAGAAAAAAAATAGGGGCAAAAAGTAAGAAGTTTATTAGACAATTGAAGGAACGAGAAAAAAAAAAAAAGCAAAGGGCAATTCTGTCTTCTTACTTGGTTGCTTTTAGTCTCCTAATA

mRNA sequence

GTTTTAATTAATTTTAGAAAGTGGTTTTTTTCTGACTTTTTTTATTGTTTATATAAATCATGTCTCTCACATGGATTTTTCTTGCCAAGCTACTATCATCCTTCCCCTTTTCTGCAGATCAATTGTGTTTGTTTCCCGAGAAAACAAATATGGGTCAGAAATCTGTCCTCTCTCTCAGCTTCCTGCTTCTCTTTCTGGGTTTCTCCTTTCTAATTTCTTCCACGGCTGTTCCCTCCACAAGAATCCTCAAATCAACTTTTGGTCACCCATCTGCCCAAGATTTCGTTTTTCAGGATGCAAGAGATCATATGAAGATAAGTGGTGGAGATTCATTTGAATTGGTGGAGGAAAGATTGTTTGAAGGAAGAATGGTTTTGGAGAACAATGATTATCCTGGCACAGGGGCAAACAATCACCATGATCCTAAGTCTCCTTCTGCAAAACCATAGTTTTCTCAAAGATCAATAACGATTTTGTTTTTAGTTTCTTTTTCTTTTTTTTTTTTTTTTTGTGTTTTAAATCTTAACTATGCATTTTGAATCTTCACAAAATTTTAGAAATAAAGAGGTTGTTTTTTTTTCAAATTTTAATTCTTTTTCTTTCTATAAATTTGGTTATCAATCAAACAAGAATTGAAAACATAATCGTTATTGGGGTGATTTGTAAACATTAAAAAAGAAAAAAAATAGGGGCAAAAAGTAAGAAGTTTATTAGACAATTGAAGGAACGAGAAAAAAAAAAAAAGCAAAGGGCAATTCTGTCTTCTTACTTGGTTGCTTTTAGTCTCCTAATA

Coding sequence (CDS)

ATGTCTCTCACATGGATTTTTCTTGCCAAGCTACTATCATCCTTCCCCTTTTCTGCAGATCAATTGTGTTTGTTTCCCGAGAAAACAAATATGGGTCAGAAATCTGTCCTCTCTCTCAGCTTCCTGCTTCTCTTTCTGGGTTTCTCCTTTCTAATTTCTTCCACGGCTGTTCCCTCCACAAGAATCCTCAAATCAACTTTTGGTCACCCATCTGCCCAAGATTTCGTTTTTCAGGATGCAAGAGATCATATGAAGATAAGTGGTGGAGATTCATTTGAATTGGTGGAGGAAAGATTGTTTGAAGGAAGAATGGTTTTGGAGAACAATGATTATCCTGGCACAGGGGCAAACAATCACCATGATCCTAAGTCTCCTTCTGCAAAACCATAG

Protein sequence

MSLTWIFLAKLLSSFPFSADQLCLFPEKTNMGQKSVLSLSFLLLFLGFSFLISSTAVPSTRILKSTFGHPSAQDFVFQDARDHMKISGGDSFELVEERLFEGRMVLENNDYPGTGANNHHDPKSPSAKP

Homology

[Close]

BLAST of Tan0021532 vs. NCBI nr
Match: KAG6596972.1 (hypothetical protein SDJN03_10152, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028446.1 hypothetical protein SDJN02_09627 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-29
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 31  MGQKSVLSLSFLLLFLGFSFLISSTAVPSTRILKSTFGHPSAQDFVFQDARDHMKISGGD 90
           MG K +L L+FLLLFL F+FLISSTAVP+TR+L+S F  PSAQ  VFQD RD ++ISG D
Sbjct: 1   MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRD-LEISGED 60

Query: 91  SFELVEERLFEGRMVLENNDYPGTGANNHHDPKSPSAKP 130
           S E V+ERL EGR+VLENNDYPGTGANNHHDPKSP+ KP
Sbjct: 61  SLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPATKP 98

[Close]

BLAST of Tan0021532 vs. NCBI nr
Match: KGN59481.1 (hypothetical protein Csa_001422 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-23
Identity = 71/102 (69.61%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 31  MGQKSVLSLSFLLLFLGFSFLISST---AVPSTRILKSTFGHPSAQDFVFQDARDHMKIS 90
           MGQK     +F LLFL FSFL+SS    AVP+TRILKSTF HPS Q  V QD RD M+I 
Sbjct: 1   MGQK---IFTFFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRD-MEII 60

Query: 91  GGDSFELVEERLFEGRMVLENNDYPGTGANNHHDPKSPSAKP 130
            GDSF    ERLFEGR++LENNDYPGTGANNHHDPKSP AKP
Sbjct: 61  DGDSF----ERLFEGRLILENNDYPGTGANNHHDPKSP-AKP 93

[Close]

BLAST of Tan0021532 vs. NCBI nr
Match: KAG7017658.1 (hypothetical protein SDJN02_19524 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.2 bits (295), Expect = 5.1e-23
Identity = 68/100 (68.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 31  MGQKSVLSL-SFLLLFLGFSFLISSTAVPSTRILKSTFGHPSAQDFVFQDARDHMKISGG 90
           MGQK  LSL   LLLFLGFS L+SS AVP+TRI KSTF  PSAQDFVFQD RD ++ +GG
Sbjct: 1   MGQKISLSLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRD-LEFNGG 60

Query: 91  DSFELVEERLFEGRMVLENNDYPGTGANNHHDPKSPSAKP 130
           D F         GR+VLENNDYPGTGANNHHDP +P AKP
Sbjct: 61  DLF---------GRLVLENNDYPGTGANNHHDPNTP-AKP 89

[Close]

BLAST of Tan0021532 vs. NCBI nr
Match: KAG6580910.1 (hypothetical protein SDJN03_20912, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.9 bits (294), Expect = 6.7e-23
Identity = 68/100 (68.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 31  MGQKSVLSLS-FLLLFLGFSFLISSTAVPSTRILKSTFGHPSAQDFVFQDARDHMKISGG 90
           MGQK  LSL   LLLFLGFS L+SS AVP+TRI KSTF  PSAQDFVFQD RD ++ +GG
Sbjct: 1   MGQKISLSLQRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRD-LEFNGG 60

Query: 91  DSFELVEERLFEGRMVLENNDYPGTGANNHHDPKSPSAKP 130
           D F         GR VLENNDYPGTGANNHHDP +P AKP
Sbjct: 61  DLF---------GRFVLENNDYPGTGANNHHDPNTP-AKP 89

[Close]

BLAST of Tan0021532 vs. NCBI nr
Match: KAA0053852.1 (hypothetical protein E6C27_scaffold135G002430 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 3.7e-21
Identity = 66/100 (66.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 31  MGQKSVLSLSFLLLFLGFSFLISST---AVPSTRILKSTF-GHPSAQDFVFQDARDHMKI 90
           MGQK     +F LLFL FSFL+SS+   AVP+TRILKSTF  HPS Q  V +D RD ++I
Sbjct: 1   MGQK---IFTFFLLFLAFSFLLSSSSSFAVPTTRILKSTFERHPSYQALVHEDVRD-LEI 60

Query: 91  SGGDSFELVEERLFEGRMVLENNDYPGTGANNHHDPKSPS 127
             GDSF    ERLFEGR++LENNDYPGTGANNHHDPKSP+
Sbjct: 61  IDGDSF----ERLFEGRLILENNDYPGTGANNHHDPKSPA 92

[Close]

BLAST of Tan0021532 vs. ExPASy TrEMBL
Match: A0A0A0LHJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.5e-24
Identity = 71/102 (69.61%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 31  MGQKSVLSLSFLLLFLGFSFLISST---AVPSTRILKSTFGHPSAQDFVFQDARDHMKIS 90
           MGQK     +F LLFL FSFL+SS    AVP+TRILKSTF HPS Q  V QD RD M+I 
Sbjct: 1   MGQK---IFTFFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRD-MEII 60

Query: 91  GGDSFELVEERLFEGRMVLENNDYPGTGANNHHDPKSPSAKP 130
            GDSF    ERLFEGR++LENNDYPGTGANNHHDPKSP AKP
Sbjct: 61  DGDSF----ERLFEGRLILENNDYPGTGANNHHDPKSP-AKP 93

[Close]

BLAST of Tan0021532 vs. ExPASy TrEMBL
Match: A0A5A7UDI6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002430 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.8e-21
Identity = 66/100 (66.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 31  MGQKSVLSLSFLLLFLGFSFLISST---AVPSTRILKSTF-GHPSAQDFVFQDARDHMKI 90
           MGQK     +F LLFL FSFL+SS+   AVP+TRILKSTF  HPS Q  V +D RD ++I
Sbjct: 1   MGQK---IFTFFLLFLAFSFLLSSSSSFAVPTTRILKSTFERHPSYQALVHEDVRD-LEI 60

Query: 91  SGGDSFELVEERLFEGRMVLENNDYPGTGANNHHDPKSPS 127
             GDSF    ERLFEGR++LENNDYPGTGANNHHDPKSP+
Sbjct: 61  IDGDSF----ERLFEGRLILENNDYPGTGANNHHDPKSPA 92

[Close]

BLAST of Tan0021532 vs. ExPASy TrEMBL
Match: A0A5B6ZB32 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_010781 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-18
Identity = 58/104 (55.77%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 22  LCLFPEKTNMGQKSVLSLSFLLLFLGFSFLISSTAVPSTRILKSTFGHPSAQDFVFQDAR 81
           LC+F    NM  K+ L L  L+LFLGF F++SS AVP++R LKS    P+AQD   Q   
Sbjct: 29  LCIFCLNINMEHKAFLRL--LVLFLGFYFVLSSAAVPTSRSLKSIEKDPTAQDLFAQSVM 88

Query: 82  DHMKISGGDSFELVEERLFEGRMVLENNDYPGTGANNHHDPKSP 126
           D M+  G    EL+EER  EGRM +E+NDYPGTGANNHHDPK+P
Sbjct: 89  D-MRTDG----ELLEERFIEGRMDIESNDYPGTGANNHHDPKTP 125

[Close]

BLAST of Tan0021532 vs. ExPASy TrEMBL
Match: A0A6A6KJS2 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_004666 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.5e-17
Identity = 59/103 (57.28%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 31  MGQKSVLSLSFLLLFLGFSFLISSTAVPSTRILKSTFGHPSA-QDFVFQDARDHMKISGG 90
           M  K  LS+  LLLFLGFSF++SS AVPSTR LKST  +PS+ QDF+ QDA D       
Sbjct: 1   MVHKGFLSVRLLLLFLGFSFVLSSLAVPSTRSLKSTEENPSSVQDFLTQDAMD------- 60

Query: 91  DSFELVEERLFE-------GRMVLENNDYPGTGANNHHDPKSP 126
               LVEE++ +       GRM LEN DYPGTGANNHHDPK+P
Sbjct: 61  --LNLVEEQVLDLGEGYINGRMDLENTDYPGTGANNHHDPKTP 94

[Close]

BLAST of Tan0021532 vs. ExPASy TrEMBL
Match: A0A6P3YVB6 (uncharacterized protein LOC107405246 OS=Ziziphus jujuba OX=326968 GN=LOC107405246 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.5e-15
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 27  EKTNMGQKSVLSLSFLLLFLGFSFLISSTAVPSTRILKSTFGHPSAQDFVFQDARDHMKI 86
           + + M QK +L+L  +LL LGFS  + S+A+P+TR+LKST    S+   +   +   ++ 
Sbjct: 37  QNSKMVQKLLLTLLLVLLLLGFSNHLYSSAIPTTRVLKSTMEDSSSPQSLLVQSEVQLE- 96

Query: 87  SGGDSFELVEERLFEGRMVLENNDYPGTGANNHHDPKSP 126
            G + FE+ EE  +EGRMV+EN DYPGTGANNHHDP++P
Sbjct: 97  DGEELFEVGEEGFYEGRMVMENTDYPGTGANNHHDPRTP 134

The following BLAST results are available for this feature:

BLAST of Tan0021532 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0021532 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596972.1	1.3e-29	72.73	hypothetical protein SDJN03_10152, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN59481.1	1.8e-23	69.61	hypothetical protein Csa_001422 [Cucumis sativus]	[more]
KAG7017658.1	5.1e-23	68.00	hypothetical protein SDJN02_19524 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6580910.1	6.7e-23	68.00	hypothetical protein SDJN03_20912, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0053852.1	3.7e-21	66.00	hypothetical protein E6C27_scaffold135G002430 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0021532 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHJ0	8.5e-24	69.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1	[more]
A0A5A7UDI6	1.8e-21	66.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5B6ZB32	2.4e-18	55.77	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_010781...	[more]
A0A6A6KJS2	4.5e-17	57.28	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_004666 PE=4 SV=1	[more]
A0A6P3YVB6	2.5e-15	47.47	uncharacterized protein LOC107405246 OS=Ziziphus jujuba OX=326968 GN=LOC10740524...	[more]

BLAST of Tan0021532 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..129
None	No IPR available	PANTHER	PTHR33474	TRANSMEMBRANE PROTEIN	coord: 31..126
None	No IPR available	PANTHER	PTHR33474:SF28	PROTEIN, PUTATIVE-RELATED	coord: 31..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021532.1	Tan0021532.1	mRNA