Tan0021492 (gene) Snake gourd v1

Overview


Name	Tan0021492
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ribonucloprotein
Location	LG05: 74613791 .. 74616073 (-)
RNA-Seq Expression	Tan0021492
Synteny	Tan0021492

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCGCAACCATTCACCCCTTAAACCCTAGTAATAAAGAAGGGCAGAAGCCAAAAACCAGACAGCAATCTCCGTCGTCGTCGAAAATCCCTTTCTCTCCGGCAGTTCTATTGTCGATAAAACCTTATCGAAAGCAATGGGGAGTGATAGCGAGGCAGAGAAGTCGCATCAAAAGGACAAAGAAAAGGAGAAGAAGAAGCTGTTGGCTCTTGCACCCATTGCCAAACCCCTTGCCGGCAAGAAGCTCTGCAAACGCACTCTCAAGCTTGTTCGCAAAGGTATTCCATCTGTTCACTCTCAACGCAGGCTTTATTCGCTTATTCGCTATGCGAGACTGGCCTTTTTTATTTTTATTTTTTGCAATTTTTTTGTGAGTTTTGGTTTAGCGATGAGTTTTGGAGGCGTTGTTTATTGTGCATAGGAAGTTTGAGTTCGAATTAGTATCATTGTTTTCTTTTCCATCATTCAATGGATTTAGTTGATTCTGTAAGCTGGTAATGAACCAGAGTGATACATTGATGTTTGCTTCTGGGCTAAGGTTACTTCATTTAATTAGGACCATGTTGGTGCTTTTTCTGCAATTTGATATTAGAGGACAAGGTATTGAATTCGGAAGTACCAAATGAGTGTCCGCCTAAGGAAATTGATTTCCTTTGAATTGTTCTTGTTAATATTCATTGTGGCGTCGTTCTTTGTATGGCCCGTTTTTTGTTACTTCATTTTCTTCCTTGAAAAAATGTGATTTTTGTATTGAATGTAAAAAATTGCGTCCTTGTTCTTTCAGCTGCTGAGTACAAGTGCTTGAAGCGGGGGGTAAAGGAGGTGGTCAAAAGCATACGGCGCGGACAAAAAGGGTAATTTCTGCGATGATTTTAATCTTATTCTTAGCCTGTTAGAGCCTTTTATTATGCTAAAGCTAAAGTTAGAACAATGGAAAGTTATGACTAACAAATGGACAAGGAAGGAGGAATTATCAAATCATACCATTATAACCTTCCCGTTTATCTGTTTTCTGAGGAGATATTGAGTAACATATATATTGCAATGAGCATGGTTAGCTTCAAGATTTCAAGCTGCGCTATAGATTTGTTTGTTTGTTATGATGACAGTATAATTCCAATGTACTTTTACATACGTTGTAATAAATTATTGATTGGAGGGAGGGATTAAAATCAAAACAAGCCTTTGGGGCATTCATACGCCTAATATAATATCTAAAGTTCCTTTTACTGTATGGTAATGTTAACTGCTTCCCTCCATATTTTGTTATGAATGCAGATTGTGTGTGATAGCTGGAAACATATCCCCAATCGATGTGATTACTCATGTTCCAATCTTATGTGAAGAGGCAGAAATTCGCTACGTATATGTTCCATCCAAGGAAGTAAGTGATTGTTCGAATCTTTTGGTAAGGTTTGTTTGTTTAATTATTGGTGTGATATGCGAAGCAGTTGGGGAAGGAGAGAAGTGATGGCTGCATCAATGAAATCTTTGTACCCTGTCATTGTTACTTGAGTTTGACATTGATTCAAGTTCCTTAGCACCTTATAAGTTTTCTCGACCACAATTTGCCATGATTCTTCGTTCCTTGTGATACTAACAACAAGCATTAATCATGTTTATTCTTCAGGATCTTGCGAATGCAGGGTCGACAAAGAGGCCAACATGTTGTGTGCTGGTACAAACTAAGCCAAACAAAGGGGAGCTTGGATCAACCGAACAAGAGAAACTCAAGGCTGATTTTGACCAAGTTGTAGCAGAAGTATCAGAACTTACAAGTAGTCTTTTCTGAAGGGTGAAGCCATTGTTCTTTAACTTTCCCTCAATGTACCTGTAGCTTTTTTCTGCAAAGTGGTTAGTGTACTCTGTTTTACTCCAAAATTTGTTTGAGCCTATGCCATTTCTAGAGCAACCATCTCTCTTAATATTAAATACGCAGTGTTTCAGAGGCGGTGACGTTGATATTTTCCATCTAGTCCAGTCATGTCTGAATTCTTCTTAGTTTGAAGAAGAGTGATTGGATAGAATTTGTCAGAATATAGCCTTATTAAGTAGAGTAATGGAATTAATTATTTTTACATTTAAAAAAATGGAGGTGCAAACTGCAAAACTAACAAACTATTCAATGAAACTGTCACAATGTGACTGTCTCATAGTAACATTGTATATAGATTCAATAATTTTTATGCTTTCTAATAATTGCTAGATATATATTTGTGACACTCTCTCTTCATTTAATGGTGAAAATTTGTCCCTCATTGTTGTGGTCTTATTGAATTCTCT

mRNA sequence

GTTTCGCAACCATTCACCCCTTAAACCCTAGTAATAAAGAAGGGCAGAAGCCAAAAACCAGACAGCAATCTCCGTCGTCGTCGAAAATCCCTTTCTCTCCGGCAGTTCTATTGTCGATAAAACCTTATCGAAAGCAATGGGGAGTGATAGCGAGGCAGAGAAGTCGCATCAAAAGGACAAAGAAAAGGAGAAGAAGAAGCTGTTGGCTCTTGCACCCATTGCCAAACCCCTTGCCGGCAAGAAGCTCTGCAAACGCACTCTCAAGCTTGTTCGCAAAGCTGCTGAGTACAAGTGCTTGAAGCGGGGGGTAAAGGAGGTGGTCAAAAGCATACGGCGCGGACAAAAAGGATTGTGTGTGATAGCTGGAAACATATCCCCAATCGATGTGATTACTCATGTTCCAATCTTATGTGAAGAGGCAGAAATTCGCTACGTATATGTTCCATCCAAGGAAGATCTTGCGAATGCAGGGTCGACAAAGAGGCCAACATGTTGTGTGCTGGTACAAACTAAGCCAAACAAAGGGGAGCTTGGATCAACCGAACAAGAGAAACTCAAGGCTGATTTTGACCAAGTTGTAGCAGAAGTATCAGAACTTACAAGTAGTCTTTTCTGAAGGGTGAAGCCATTGTTCTTTAACTTTCCCTCAATGTACCTGTAGCTTTTTTCTGCAAAGTGGTTAGTGTACTCTGTTTTACTCCAAAATTTGTTTGAGCCTATGCCATTTCTAGAGCAACCATCTCTCTTAATATTAAATACGCAGTGTTTCAGAGGCGGTGACGTTGATATTTTCCATCTAGTCCAGTCATGTCTGAATTCTTCTTAGTTTGAAGAAGAGTGATTGGATAGAATTTGTCAGAATATAGCCTTATTAAGTAGAGTAATGGAATTAATTATTTTTACATTTAAAAAAATGGAGGTGCAAACTGCAAAACTAACAAACTATTCAATGAAACTGTCACAATGTGACTGTCTCATAGTAACATTGTATATAGATTCAATAATTTTTATGCTTTCTAATAATTGCTAGATATATATTTGTGACACTCTCTCTTCATTTAATGGTGAAAATTTGTCCCTCATTGTTGTGGTCTTATTGAATTCTCT

Coding sequence (CDS)

ATGGGGAGTGATAGCGAGGCAGAGAAGTCGCATCAAAAGGACAAAGAAAAGGAGAAGAAGAAGCTGTTGGCTCTTGCACCCATTGCCAAACCCCTTGCCGGCAAGAAGCTCTGCAAACGCACTCTCAAGCTTGTTCGCAAAGCTGCTGAGTACAAGTGCTTGAAGCGGGGGGTAAAGGAGGTGGTCAAAAGCATACGGCGCGGACAAAAAGGATTGTGTGTGATAGCTGGAAACATATCCCCAATCGATGTGATTACTCATGTTCCAATCTTATGTGAAGAGGCAGAAATTCGCTACGTATATGTTCCATCCAAGGAAGATCTTGCGAATGCAGGGTCGACAAAGAGGCCAACATGTTGTGTGCTGGTACAAACTAAGCCAAACAAAGGGGAGCTTGGATCAACCGAACAAGAGAAACTCAAGGCTGATTTTGACCAAGTTGTAGCAGAAGTATCAGAACTTACAAGTAGTCTTTTCTGA

Protein sequence

MGSDSEAEKSHQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSSLF

Homology

[Close]

BLAST of Tan0021492 vs. ExPASy Swiss-Prot
Match: Q9LEY9 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g08180 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.2e-55
Identity = 116/158 (73.42%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MGSDSEAEKSHQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSD+EAEKS QK+K   KK  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITH+PILCEEA + YVYVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSSL 159
           VLV  KP KG+L + E  KLK D++QV  ++ EL +S+
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155

[Close]

BLAST of Tan0021492 vs. ExPASy Swiss-Prot
Match: P32495 (H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NHP2 PE=1 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 8.2e-34
Identity = 76/156 (48.72%), Postives = 112/156 (71.79%), Query Frame = 0


Query: 1   MGSDSEAEKSHQKDK--EKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGV 60
           MG D++  K  ++ K  +  + ++ A+ P AKPLA KKL K+ LK V+KA++ K +KRGV
Sbjct: 1   MGKDNKEHKESKESKTVDNYEARMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGV 60

Query: 61  KEVVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPT 120
           KEVVK++R+G+KGL VIAG+ISP DVI+H+P+LCE+  + Y+++PSK+DL  AG+TKRPT
Sbjct: 61  KEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPT 120

Query: 121 CCVLVQTKPNKGELGSTEQEKLKADFDQVVAEVSEL 155
             V +    NK + G  ++E+ K  F++VV EV  L
Sbjct: 121 SVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156

[Close]

BLAST of Tan0021492 vs. ExPASy Swiss-Prot
Match: Q9P7H0 (H/ACA ribonucleoprotein complex subunit nhp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nhp2 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-28
Identity = 68/154 (44.16%), Postives = 103/154 (66.88%), Query Frame = 0


Query: 1   MGSDSEAEKSHQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M  D +  K     +++    L AL PIAKPLA KKL K+ +K V+KA++ K + RGVKE
Sbjct: 1   MAKDKKDHKHSGSTEDEYDSYLPALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVK++R+G+KGL ++AG+ISP+DVI+H+P+LCE+  + Y+Y  SKE L  A +TKRPT C
Sbjct: 61  VVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSEL 155
           V++     K ++   E+   K  +++++ EV  L
Sbjct: 121 VMIVPGGKKKDMSKVEE--YKESYEEIIKEVPAL 152

[Close]

BLAST of Tan0021492 vs. ExPASy Swiss-Prot
Match: Q8I7X7 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri OX=7741 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-24
Identity = 60/152 (39.47%), Postives = 103/152 (67.76%), Query Frame = 0


Query: 4   DSEAEKSHQKDKEKEKKKLLA-LAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVV 63
           + E    +++D+E+  + L   + PIA PLA +KL KR  K V+KA++ K +++G+++V 
Sbjct: 15  EHEESGGNKEDRERAYEVLATRVNPIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQ 74

Query: 64  KSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCCVL 123
           K I++G++G+ +IAG+ +PI+V  H+P++CE+A+I Y YVP+K+DL  A  +KRPTCCVL
Sbjct: 75  KFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVL 134

Query: 124 VQTKPNKGELGSTEQEKLKADFDQVVAEVSEL 155
           +  KPN         E  ++ +D+ + +V+ L
Sbjct: 135 L--KPN---------ESYQSSYDECLTDVTTL 155

[Close]

BLAST of Tan0021492 vs. ExPASy Swiss-Prot
Match: Q6PBV6 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio OX=7955 GN=nhp2 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23
Identity = 62/140 (44.29%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 16  EKEKKKLLA-LAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCV 75
           EK  ++L+A + PIA PLA +KL K+  K V+KAA+ K ++RGVKEV K I +G+ G+ V
Sbjct: 18  EKSYQELIANINPIANPLASRKLSKKLYKCVKKAAKVKQIRRGVKEVQKFINKGETGIVV 77

Query: 76  IAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGS 135
            AG+  PIDV  H+PI+CE+  + Y YVPSK DL ++  +KRPTC +++  KP+      
Sbjct: 78  FAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMI--KPH------ 137

Query: 136 TEQEKLKADFDQVVAEVSEL 155
              ++ K  +D+ V EV+ L
Sbjct: 138 ---DEYKEAYDECVEEVTSL 146

[Close]

BLAST of Tan0021492 vs. NCBI nr
Match: XP_008454886.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo] >TYJ98965.1 H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 297.4 bits (760), Expect = 7.6e-77
Identity = 155/159 (97.48%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MGSDSEAEKSHQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS QKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEE++IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSSLF 160
           VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTS+LF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159

[Close]

BLAST of Tan0021492 vs. NCBI nr
Match: XP_038894923.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Benincasa hispida])

HSP 1 Score: 297.4 bits (760), Expect = 7.6e-77
Identity = 154/159 (96.86%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MGSDSEAEKSHQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSHQKDK+KEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHQKDKKKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEA+IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSSLF 160
           VLVQTKPNKGELGSTEQEKLKAD++QVVAEVSELTS+LF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADYEQVVAEVSELTSTLF 159

[Close]

BLAST of Tan0021492 vs. NCBI nr
Match: XP_023541121.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.4 bits (755), Expect = 2.9e-76
Identity = 153/159 (96.23%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MGSDSEAEKSHQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSH KDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEEA+IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSSLF 160
           VL+QTKPNKGELGSTEQEKLKA+FDQVVAEVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSVF 159

[Close]

BLAST of Tan0021492 vs. NCBI nr
Match: XP_022955313.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita moschata])

HSP 1 Score: 294.7 bits (753), Expect = 4.9e-76
Identity = 152/159 (95.60%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MGSDSEAEKSHQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSH KDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEEA+IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSSLF 160
           VL+QTKPNKGELGSTEQEKLKA+FDQVV+EVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 159

[Close]

BLAST of Tan0021492 vs. NCBI nr
Match: XP_022994544.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita maxima])

HSP 1 Score: 292.4 bits (747), Expect = 2.4e-75
Identity = 152/159 (95.60%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGSDSEAEKSHQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M SDSEAEKSH KDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MVSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEEA+IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSSLF 160
           VL+QTKPNKGELGSTEQEKLKA+FDQVVAEVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSIF 159

[Close]

BLAST of Tan0021492 vs. ExPASy TrEMBL
Match: A0A5D3BKS6 (Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001680 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.7e-77
Identity = 155/159 (97.48%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MGSDSEAEKSHQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS QKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEE++IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSSLF 160
           VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTS+LF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159

[Close]

BLAST of Tan0021492 vs. ExPASy TrEMBL
Match: A0A1S3C0C8 (Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103495169 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.7e-77
Identity = 155/159 (97.48%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MGSDSEAEKSHQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS QKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEE++IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSSLF 160
           VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTS+LF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159

[Close]

BLAST of Tan0021492 vs. ExPASy TrEMBL
Match: A0A6J1GTK9 (Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111457314 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.4e-76
Identity = 152/159 (95.60%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MGSDSEAEKSHQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSH KDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEEA+IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSSLF 160
           VL+QTKPNKGELGSTEQEKLKA+FDQVV+EVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 159

[Close]

BLAST of Tan0021492 vs. ExPASy TrEMBL
Match: A0A6J1K350 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111490234 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 152/159 (95.60%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGSDSEAEKSHQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M SDSEAEKSH KDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MVSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEEA+IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSSLF 160
           VL+QTKPNKGELGSTEQEKLKA+FDQVVAEVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSIF 159

[Close]

BLAST of Tan0021492 vs. ExPASy TrEMBL
Match: A0A0A0LVP3 (Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_1G041530 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.6e-75
Identity = 154/159 (96.86%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGSDSEAEKSHQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS  KDKEKE KKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRLKDKEKE-KKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEE+EIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSSLF 160
           VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTS+LF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 158

[Close]

BLAST of Tan0021492 vs. TAIR 10
Match: AT5G08180.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-56
Identity = 116/158 (73.42%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MGSDSEAEKSHQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSD+EAEKS QK+K   KK  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITH+PILCEEA + YVYVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSSL 159
           VLV  KP KG+L + E  KLK D++QV  ++ EL +S+
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155

[Close]

BLAST of Tan0021492 vs. TAIR 10
Match: AT5G08180.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-56
Identity = 116/158 (73.42%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MGSDSEAEKSHQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSD+EAEKS QK+K   KK  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITH+PILCEEA + YVYVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSSL 159
           VLV  KP KG+L + E  KLK D++QV  ++ EL +S+
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155

[Close]

BLAST of Tan0021492 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 71.2 bits (173), Expect = 8.2e-13
Identity = 42/128 (32.81%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 86
           P A PLA  +L    L LV++A  YK LK+G  E  K++ RG     V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILL 67

Query: 87  HVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKADFDQ 146
           H+P+L E+  + YV+VPSK+ L  A    RP     V          S E  +LK+    
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVT---------SNEASQLKSQIQH 126

Query: 147 VVAEVSEL 155
           +   + +L
Sbjct: 128 LKDAIEKL 126

[Close]

BLAST of Tan0021492 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 71.2 bits (173), Expect = 8.2e-13
Identity = 42/128 (32.81%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 86
           P A PLA  +L    L LV++A  YK LK+G  E  K++ RG     V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILL 67

Query: 87  HVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKADFDQ 146
           H+P+L E+  + YV+VPSK+ L  A    RP     V          S E  +LK+    
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT---------SNEASQLKSQIQH 126

Query: 147 VVAEVSEL 155
           +   + +L
Sbjct: 128 LKDAIEKL 126

[Close]

BLAST of Tan0021492 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 41/128 (32.03%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 86
           P A PLA  +L    + LV++A  YK LK+G  E  K++ RG     V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILL 67

Query: 87  HVPILCEEAEIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKADFDQ 146
           H+P+L E+  + YV+VPSK+ L  A    RP     V          S E  +LK+    
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT---------SNEASQLKSQIQH 126

Query: 147 VVAEVSEL 155
           +   + +L
Sbjct: 128 LKDAIEKL 126

The following BLAST results are available for this feature:

BLAST of Tan0021492 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LEY9	2.2e-55	73.42	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana O...	[more]
P32495	8.2e-34	48.72	H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain...	[more]
Q9P7H0	1.0e-28	44.16	H/ACA ribonucleoprotein complex subunit nhp2 OS=Schizosaccharomyces pombe (strai...	[more]
Q8I7X7	3.5e-24	39.47	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri...	[more]
Q6PBV6	1.3e-23	44.29	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio OX=7955 GN...	[more]

BLAST of Tan0021492 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454886.1	7.6e-77	97.48	PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo]...	[more]
XP_038894923.1	7.6e-77	96.86	H/ACA ribonucleoprotein complex subunit 2-like protein [Benincasa hispida]	[more]
XP_023541121.1	2.9e-76	96.23	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita pepo subsp. pe...	[more]
XP_022955313.1	4.9e-76	95.60	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita moschata]	[more]
XP_022994544.1	2.4e-75	95.60	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita maxima]	[more]

BLAST of Tan0021492 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BKS6	3.7e-77	97.48	Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001...	[more]
A0A1S3C0C8	3.7e-77	97.48	Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103495169 PE=3 SV=1	[more]
A0A6J1GTK9	2.4e-76	95.60	Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111457314 PE=3 SV=1	[more]
A0A6J1K350	1.2e-75	95.60	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111490234 PE=3 SV=1	[more]
A0A0A0LVP3	7.6e-75	96.86	Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_1G041530 PE=3 SV=1	[more]

BLAST of Tan0021492 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08180.1	1.6e-56	73.42	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G08180.2	1.6e-56	73.42	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.1	8.2e-13	32.81	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G20160.1	8.2e-13	32.81	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G22380.1	1.4e-12	32.03	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 89..99 score: 44.63 coord: 54..68 score: 36.97 coord: 73..86 score: 29.87 coord: 99..113 score: 36.06
IPR002415	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	PRINTS	PR00883	NUCLEARHMG	coord: 101..113 score: 43.08 coord: 40..55 score: 41.25 coord: 57..67 score: 43.64 coord: 27..40 score: 50.0
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 19..155 e-value: 9.2E-49 score: 166.3
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 20..132
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 42..126 e-value: 1.7E-23 score: 82.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 2..158
None	No IPR available	PANTHER	PTHR23105:SF146	SUBFAMILY NOT NAMED	coord: 2..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021492.1	Tan0021492.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000469	cleavage involved in rRNA processing
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0031118	rRNA pseudouridine synthesis
biological_process	GO:0031120	snRNA pseudouridine synthesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0034513	box H/ACA snoRNA binding
molecular_function	GO:0003723	RNA binding