Tan0021447 (gene) Snake gourd v1

Overview


Name	Tan0021447
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein RALF-like 10
Location	LG09: 41403067 .. 41403282 (+)
RNA-Seq Expression	Tan0021447
Synteny	Tan0021447

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAGCCATGGCTAATTTGTTTAGTTCTTATTAGCATGTTGGTGACAAGACAAGAAGTAGCAGCGGACAGAACTTATCTGAAACTAGTGGATTGCAACCAACCAAACCCACCACCAAGTTGTTCTTCACCAAATGGAGAAAGTTTTACACCTGTTGCTGCTAATGCCTATACTCGAGGTTGCTCTACCATCAATCGTTGTCGTGGAGGATGA

mRNA sequence

ATGAAGCAGCCATGGCTAATTTGTTTAGTTCTTATTAGCATGTTGGTGACAAGACAAGAAGTAGCAGCGGACAGAACTTATCTGAAACTAGTGGATTGCAACCAACCAAACCCACCACCAAGTTGTTCTTCACCAAATGGAGAAAGTTTTACACCTGTTGCTGCTAATGCCTATACTCGAGGTTGCTCTACCATCAATCGTTGTCGTGGAGGATGA

Coding sequence (CDS)

ATGAAGCAGCCATGGCTAATTTGTTTAGTTCTTATTAGCATGTTGGTGACAAGACAAGAAGTAGCAGCGGACAGAACTTATCTGAAACTAGTGGATTGCAACCAACCAAACCCACCACCAAGTTGTTCTTCACCAAATGGAGAAAGTTTTACACCTGTTGCTGCTAATGCCTATACTCGAGGTTGCTCTACCATCAATCGTTGTCGTGGAGGATGA

Protein sequence

MKQPWLICLVLISMLVTRQEVAADRTYLKLVDCNQPNPPPSCSSPNGESFTPVAANAYTRGCSTINRCRGG

Homology

[Close]

BLAST of Tan0021447 vs. ExPASy Swiss-Prot
Match: O64466 (Protein RALF-like 11 OS=Arabidopsis thaliana OX=3702 GN=RALFL11 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-08
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 5  WLICLVLISMLVTRQEVAADRTYLK---LVDCNQPNPPPSCSSPNGESFTPVAANAYTRG 64
          WLICL++I   V  + V + R Y++   +  C  PNPPP C+ P  E   P   N Y+RG
Sbjct: 4  WLICLLVICAAVIAEPVES-RNYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEYSRG 63

Query: 65 CSTINRCR 70
          CS I+RCR
Sbjct: 64 CSKIHRCR 70

[Close]

BLAST of Tan0021447 vs. ExPASy Swiss-Prot
Match: F4ISE2 (Protein RALF-like 13 OS=Arabidopsis thaliana OX=3702 GN=RALFL13 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.7e-08
Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 5  WLICLVLISMLVTRQEVAADRTYLK---LVDCNQPNPPPSCSSPNGESFTPVAANAYTRG 64
          W+ICL++I   V  + V + R Y++   +  C  PNPPP C+ P  E   P   N Y+RG
Sbjct: 4  WVICLLVICAAVIAEPVES-RNYIEYGAINKCAGPNPPPGCNPPGAEQKNPNPVNEYSRG 63

Query: 65 CSTINRCR 70
          CS I+RCR
Sbjct: 64 CSKIHRCR 70

[Close]

BLAST of Tan0021447 vs. ExPASy Swiss-Prot
Match: F4ISE1 (Protein RALF-like 12 OS=Arabidopsis thaliana OX=3702 GN=RALFL12 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.5e-07
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 5  WLICLVLISMLVTRQEVAADRTYLK---LVDCNQPNPPPSCSSPNGESFTPVAANAYTRG 64
          W+I L++I  +V  + V + R Y++   +  C  PNPPP C+ P  E   P   N Y+RG
Sbjct: 4  WVIGLLVICAVVIAEPVES-RNYIEYGAINKCAGPNPPPGCNPPGTEQKNPTPVNEYSRG 63

Query: 65 CSTINRCR 70
          CS I+RCR
Sbjct: 64 CSKIHRCR 70

[Close]

BLAST of Tan0021447 vs. ExPASy Swiss-Prot
Match: Q9LSG0 (Protein RALF-like 25 OS=Arabidopsis thaliana OX=3702 GN=RALFL25 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.5e-07
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 1  MKQPWLICLVLISMLVTRQEVAAD--RTYLKLVDCNQPNPPPSCSSPNGESFTPVAANAY 60
          MK   +I LV+ S+L+  +  A D  R YL L  C +PN PP C     +  TPV  N Y
Sbjct: 1  MKTFMIILLVICSILIVGRVEANDNKRKYLLLDPCLRPNAPPGCHRQPYKPRTPV--NVY 60

Query: 61 TRGCSTINRCR 70
          +RGC+TINRCR
Sbjct: 61 SRGCTTINRCR 69

[Close]

BLAST of Tan0021447 vs. ExPASy Swiss-Prot
Match: O65919 (Protein RALF-like 10 OS=Arabidopsis thaliana OX=3702 GN=RALFL10 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.2e-06
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 6  LICLVLISMLVTRQEVAADRTYLK---LVDCNQPNPPPSCSSPNGESFTPVAANAYTRGC 65
          +ICL++I   V    V + R +L    +  C  PNPPP C  P  +   P  AN Y RGC
Sbjct: 5  VICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEYRRGC 64

Query: 66 STINRCR 70
          S I RC+
Sbjct: 65 SKITRCK 71

[Close]

BLAST of Tan0021447 vs. NCBI nr
Match: XP_038877580.1 (protein RALF-like 11 [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 5  WLICLVLISMLVTRQEVAADRTYLKLVD-CNQPNPPPSCSSPNGESFTPVAANAYTRGCS 64
          WLIC+V ISMLV    VAA++ YL+ +D CNQPNPPP+CS    E    V AN Y RGCS
Sbjct: 4  WLICVVFISMLVVGPGVAAEKKYLQFLDPCNQPNPPPTCS----EVKEQVEANPYNRGCS 63

Query: 65 TINRCRGG 72
           I+RCRGG
Sbjct: 64 AIHRCRGG 67

[Close]

BLAST of Tan0021447 vs. NCBI nr
Match: XP_022947821.1 (protein RALF-like 10 [Cucurbita moschata])

HSP 1 Score: 77.4 bits (189), Expect = 5.5e-11
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 5  WLICLVLISMLVTRQEVAADRTYLKLVD-CNQPNPPPSCSSPNGESFTPVAANAYTRGCS 64
          WLICLVLI MLV  Q+VA++  +LK  D C QPNPPP CS  N      V AN Y RGCS
Sbjct: 4  WLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCSIGNA-----VPANPYRRGCS 63

Query: 65 TINRCRGG 72
           I RCRGG
Sbjct: 64 KITRCRGG 66

[Close]

BLAST of Tan0021447 vs. NCBI nr
Match: XP_023533089.1 (protein RALF-like 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-10
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 5  WLICLVLISMLVTRQEVAADRTYLKLVD-CNQPNPPPSCSSPNGESFTPVAANAYTRGCS 64
          WLIC+VLISMLV  QEVA++  +LK  D C QPNPP  CS  N      V AN Y RGCS
Sbjct: 4  WLICIVLISMLVVSQEVASETKFLKFPDPCQQPNPPLGCSIGNA-----VPANPYRRGCS 63

Query: 65 TINRCRGG 72
           I RCRGG
Sbjct: 64 KITRCRGG 66

[Close]

BLAST of Tan0021447 vs. NCBI nr
Match: KAG7020863.1 (hypothetical protein SDJN02_17551, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 7.4e-08
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 7  ICLVLISMLVTRQEVAADR------TYLKLVDCNQPNPPPSCSSPNGESFTPVAANAYTR 66
          ICL LI+ML+T Q+V  ++       YLK ++C+ PNPP  CS    + +  V AN Y R
Sbjct: 6  ICLALITMLMTSQQVMTNQEATSQIKYLKHLECHHPNPPAHCSLSGVKGYQHVPANPYDR 65

Query: 67 GCSTINRCRGG 72
          GCS I+RCRGG
Sbjct: 66 GCSAIHRCRGG 76

[Close]

BLAST of Tan0021447 vs. NCBI nr
Match: KAE8637268.1 (hypothetical protein CSA_017684 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 9.7e-08
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 5  WLICLVLISMLVTRQEVAADRTYLKLVD-CNQPNPPPSCSSPNGESFTPVAANAYTRGCS 64
          WLIC+V ISMLV  QEV A   +LK  + C+ P+PPPSCSS   +       N Y RGCS
Sbjct: 4  WLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDH---APTNPYDRGCS 63

Query: 65 TINRCRG 71
           I+RCRG
Sbjct: 64 AIHRCRG 67

[Close]

BLAST of Tan0021447 vs. ExPASy TrEMBL
Match: A0A0A0LI94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-11
Identity = 41/68 (60.29%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 5  WLICLVLISMLVTRQEVAADRTYLKLVD-CNQPNPPPSCSSPNGESFTPVAANAYTRGCS 64
          WLICL LI MLV  QEVAA+  +LK +D CNQP+PPP+C  PN +      AN Y R CS
Sbjct: 4  WLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTC--PNRDKVE--EANPYNRDCS 63

Query: 65 TINRCRGG 72
           INRCRGG
Sbjct: 64 AINRCRGG 67

[Close]

BLAST of Tan0021447 vs. ExPASy TrEMBL
Match: A0A6J1G7J2 (protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-11
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 5  WLICLVLISMLVTRQEVAADRTYLKLVD-CNQPNPPPSCSSPNGESFTPVAANAYTRGCS 64
          WLICLVLI MLV  Q+VA++  +LK  D C QPNPPP CS  N      V AN Y RGCS
Sbjct: 4  WLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCSIGNA-----VPANPYRRGCS 63

Query: 65 TINRCRGG 72
           I RCRGG
Sbjct: 64 KITRCRGG 66

[Close]

BLAST of Tan0021447 vs. ExPASy TrEMBL
Match: A0A0A0M0X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.7e-08
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 5  WLICLVLISMLVTRQEVAADRTYLKLVD-CNQPNPPPSCSSPNGESFTPVAANAYTRGCS 64
          WLIC+V ISMLV  QEV A   +LK  + C+ P+PPPSCSS   +       N Y RGCS
Sbjct: 4  WLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDH---APTNPYDRGCS 63

Query: 65 TINRCRG 71
           I+RCRG
Sbjct: 64 AIHRCRG 67

[Close]

BLAST of Tan0021447 vs. ExPASy TrEMBL
Match: B2Y4P6 (Putative rapid alkalinization factor (RALF) family protein OS=Arabidopsis halleri subsp. halleri OX=81971 GN=7C17.3 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 5  WLICLVLISMLVTRQEVAADRTYLK---LVDCNQPNPPPSCSSPNGESFTPVAANAYTRG 64
          W+ICL++IS  VT + V + R Y++   +  C  PNPPP C  P  E   P   N Y+RG
Sbjct: 4  WVICLLVISAAVTAEPVES-RKYIEDGAINKCAGPNPPPGCHPPGAEDKKPTPVNEYSRG 63

Query: 65 CSTINRCR 70
          CS I+RCR
Sbjct: 64 CSKIHRCR 70

[Close]

BLAST of Tan0021447 vs. ExPASy TrEMBL
Match: D7L1Y4 (Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_900339 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 5  WLICLVLISMLVTRQEVAADRTYLK---LVDCNQPNPPPSCSSPNGESFTPVAANAYTRG 64
          W+ICL++IS  VT + V + R Y++   +  C  PNPPP C  P  E   P   N Y+RG
Sbjct: 4  WVICLLVISAAVTAEPVES-RKYIEDGVINKCAGPNPPPGCHPPGAEDKKPTPVNEYSRG 63

Query: 65 CSTINRCR 70
          CS I+RCR
Sbjct: 64 CSKIHRCR 70

[Close]

BLAST of Tan0021447 vs. TAIR 10
Match: AT2G19030.1 (ralf-like 11 )

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-09
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 5  WLICLVLISMLVTRQEVAADRTYLK---LVDCNQPNPPPSCSSPNGESFTPVAANAYTRG 64
          WLICL++I   V  + V + R Y++   +  C  PNPPP C+ P  E   P   N Y+RG
Sbjct: 4  WLICLLVICAAVIAEPVES-RNYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEYSRG 63

Query: 65 CSTINRCR 70
          CS I+RCR
Sbjct: 64 CSKIHRCR 70

[Close]

BLAST of Tan0021447 vs. TAIR 10
Match: AT2G19045.1 (RALF-like 13 )

HSP 1 Score: 57.4 bits (137), Expect = 5.5e-09
Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 5  WLICLVLISMLVTRQEVAADRTYLK---LVDCNQPNPPPSCSSPNGESFTPVAANAYTRG 64
          W+ICL++I   V  + V + R Y++   +  C  PNPPP C+ P  E   P   N Y+RG
Sbjct: 4  WVICLLVICAAVIAEPVES-RNYIEYGAINKCAGPNPPPGCNPPGAEQKNPNPVNEYSRG 63

Query: 65 CSTINRCR 70
          CS I+RCR
Sbjct: 64 CSKIHRCR 70

[Close]

BLAST of Tan0021447 vs. TAIR 10
Match: AT2G19040.1 (RALF-like 12 )

HSP 1 Score: 53.9 bits (128), Expect = 6.1e-08
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 5  WLICLVLISMLVTRQEVAADRTYLK---LVDCNQPNPPPSCSSPNGESFTPVAANAYTRG 64
          W+I L++I  +V  + V + R Y++   +  C  PNPPP C+ P  E   P   N Y+RG
Sbjct: 4  WVIGLLVICAVVIAEPVES-RNYIEYGAINKCAGPNPPPGCNPPGTEQKNPTPVNEYSRG 63

Query: 65 CSTINRCR 70
          CS I+RCR
Sbjct: 64 CSKIHRCR 70

[Close]

BLAST of Tan0021447 vs. TAIR 10
Match: AT3G25165.1 (ralf-like 25 )

HSP 1 Score: 53.9 bits (128), Expect = 6.1e-08
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 1  MKQPWLICLVLISMLVTRQEVAAD--RTYLKLVDCNQPNPPPSCSSPNGESFTPVAANAY 60
          MK   +I LV+ S+L+  +  A D  R YL L  C +PN PP C     +  TPV  N Y
Sbjct: 1  MKTFMIILLVICSILIVGRVEANDNKRKYLLLDPCLRPNAPPGCHRQPYKPRTPV--NVY 60

Query: 61 TRGCSTINRCR 70
          +RGC+TINRCR
Sbjct: 61 SRGCTTINRCR 69

[Close]

BLAST of Tan0021447 vs. TAIR 10
Match: AT2G19020.1 (ralf-like 10 )

HSP 1 Score: 52.0 bits (123), Expect = 2.3e-07
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 6  LICLVLISMLVTRQEVAADRTYLK---LVDCNQPNPPPSCSSPNGESFTPVAANAYTRGC 65
          +ICL++I   V    V + R +L    +  C  PNPPP C  P  +   P  AN Y RGC
Sbjct: 5  VICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEYRRGC 64

Query: 66 STINRCR 70
          S I RC+
Sbjct: 65 SKITRCK 71

The following BLAST results are available for this feature:

BLAST of Tan0021447 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64466	1.6e-08	44.12	Protein RALF-like 11 OS=Arabidopsis thaliana OX=3702 GN=RALFL11 PE=3 SV=1	[more]
F4ISE2	7.7e-08	42.65	Protein RALF-like 13 OS=Arabidopsis thaliana OX=3702 GN=RALFL13 PE=3 SV=1	[more]
F4ISE1	8.5e-07	41.18	Protein RALF-like 12 OS=Arabidopsis thaliana OX=3702 GN=RALFL12 PE=2 SV=1	[more]
Q9LSG0	8.5e-07	46.48	Protein RALF-like 25 OS=Arabidopsis thaliana OX=3702 GN=RALFL25 PE=3 SV=1	[more]
O65919	3.2e-06	40.30	Protein RALF-like 10 OS=Arabidopsis thaliana OX=3702 GN=RALFL10 PE=2 SV=1	[more]

BLAST of Tan0021447 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877580.1	2.5e-11	60.29	protein RALF-like 11 [Benincasa hispida]	[more]
XP_022947821.1	5.5e-11	60.29	protein RALF-like 10 [Cucurbita moschata]	[more]
XP_023533089.1	2.1e-10	60.29	protein RALF-like 10 [Cucurbita pepo subsp. pepo]	[more]
KAG7020863.1	7.4e-08	47.89	hypothetical protein SDJN02_17551, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8637268.1	9.7e-08	53.73	hypothetical protein CSA_017684 [Cucumis sativus]	[more]

BLAST of Tan0021447 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI94	2.7e-11	60.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1	[more]
A0A6J1G7J2	2.7e-11	60.29	protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1	[more]
A0A0A0M0X3	4.7e-08	53.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1	[more]
B2Y4P6	2.0e-06	45.59	Putative rapid alkalinization factor (RALF) family protein OS=Arabidopsis haller...	[more]
D7L1Y4	2.0e-06	45.59	Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRA...	[more]

BLAST of Tan0021447 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19030.1	1.1e-09	44.12	ralf-like 11	[more]
AT2G19045.1	5.5e-09	42.65	RALF-like 13	[more]
AT2G19040.1	6.1e-08	41.18	RALF-like 12	[more]
AT3G25165.1	6.1e-08	46.48	ralf-like 25	[more]
AT2G19020.1	2.3e-07	40.30	ralf-like 10	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 31..70 e-value: 6.8E-8 score: 33.4
None	No IPR available	PANTHER	PTHR34270:SF5	PROTEIN RALF-LIKE 10-RELATED	coord: 4..71
None	No IPR available	PANTHER	PTHR34270	PROTEIN RALF-LIKE 15-RELATED	coord: 4..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021447.1	Tan0021447.1	mRNA