Tan0021425 (gene) Snake gourd v1

Overview
NameTan0021425
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
LocationLG05: 13322714 .. 13325827 (+)
RNA-Seq ExpressionTan0021425
SyntenyTan0021425
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAAGATTTGGAACCTAGATGCCCCAACCTCTTTTGATCGTGCTGGTAAAGGTATATTTATATGCACTTTCTCGACAAAAAAGGACAAAATGCAAGTGGTTAGATGAGGCCCATGGATTTTCGACAAAGCCTTGGTGGTGCTCGAAGAACTGAAAGGTACAAGTAAGATCACCGAACTGGACTTCAGGTATGCATCTTTCTGGCTTCATTTCCATAATTTACCCATTGTAGGAATCTCTAGGAAAACTACAGTGGCTCATGGAAACGAGGTAGGTCAGTTTGAGGGAGTGGATTTAGATGACGAAAGATGTAGGGGAGGCAAATCGCTAAGGGTGAGAGTGAAAATTGATATTCAAAAGCCTCTAAAGCGTGTTGTGAGGTTCAAAATTGGTTCAATGATAGAGGAGGCCTGGGCTCCCATAACCTATGAAAAACTTCCTGATTTGTGCTTTTGTTGCGGGATTTTAGGGCATGGAGCCCAAGAGTGTGAGGAAAGAGGATCGGATCAAGCTGCTGAAATGCCTTTTGGGAGCTGGTTACGCGAAAGTTCAAACTGGAAAGGAAAAAAACATAATAGAGGAGTCGAAGAGTTGAAAGATCAACTGGAAAGGACCTCGGTAAGATCTGAAATAGTGGGTAGGGACGGGGTAGAGGACGATTTGGGGCGGGAAGTCAACGAGAGAAGGAGACTGGGCAGGCTCAGATTGACGACCAGAGTTTAAGCGGCCAACCAGAAAAGAAAAAGGAAAACATTTTTGGTCGGCGGGTTCAATCGAAAACGGGAGGGGTTATTCTCAAGACAAAAGCTGACAATTGTGGCAACGTTTCTTCAGAGGTGGGGCCCACAAATTTGGATGCTAATTCACATCACCGTTCAACTGTAAAAGACACCTCTTTAGAGAACTTCCATCATTTGGGCCCTTCCGAGGAAAGTGGAGTCCAGCAGCCCACCAACTCTCCTTTATTTTCTAACCCAGATTTGGTAGGTGTTGGTGGGCCTGGACATAAGCCACCCATTTTGGGTCCAGATCCAAACCAACCTAAAAGCAAGCCTGGTTCTTTTAAACAACTAAATCCTTATACAGAGTTGTTCTCCCCAATACAAGCTACGAAACTTCAACCTGGCCACGAGGAAGTTTTGGCTTCAAAAAGTTGGACCACACAAACTCAAACCATTACTATTTTCGATCAAAAAGCCGACAAGGCAAACCCAAGCAATAAGGTCGAAAAGCAAATGCTACCAAGGAAGAAATGGAAACGAATGGCCCGTGTCGAAAAAGGATATGAAGTGAGTAGTTGCAGATCCCCAATTAAGGCAGGCTCCAAACATATTCTGGACTCTGGCTTTAATTCAATTGCCCACAAGAGACTGTATTCTCAAGACTCGACTTCACAAAATGAGATATCGGCGGAGGCTGGTCAACAGCCCCGTCGGACGCTATGAAAATATTGTGCTGGAACGTTAGAGGGTTGGGGAGCCCTCGAACGTTTCGTGATCTCCGCTACGAGGTTTGTAGCAAGTCCCCACAGCTTGTGTTCATTTCTGAATCTAAATGTGATTATAGCAAGGTTGAAAGTCTTAAAGTGCTTCTGAATTTTGATAAGGATTTTTGTGTGCCAAGTGAGGGAAGGAAAGGTGGTTTGATTCTATTTTGGAACGACATTTCTCATGTAACTATTTCCTCCTCTCCGGTTGGCCACGTTGATGCTACATTTCTTTGCCAGAATAAAAGGTGGAGATTTACGGGGTTTTATGGAAACCCTTTTAGAGAGAAACAGATCGATTCCTGGAAGTTGCTTGAGCGTTTGAGTGAGACTAATGATTTGCCTTGGGTGATGGGTGGAGACTTTAATGAAATTCTTTATAACAACGAAAAGGAGGGAGGCGCCACCCAGAATGCTAGACAAATAAAGGACTTCAAGGATACGATAAATTATTGCAACCTCATTGACCAGGGCTTCAGGGGAAGCTGTTTTACTTGGTTTAAAAATAGGAACAACAAAAATAGTATTCGGGAAAGATTGGAAAGGTTTTTTATAACCCCTTCTGTGAGAGATGATGTCAAAATGGTCTCGGTTGATCATCTGAACTTTCACAAGTCTAACCATAGACCCATCATGCTGACCCTTTACTTTTGGACTCGGCATAGGCAGGGGCGCAAGAACGGAAGAATCACAAAGTTTGAGGAGAGTTGGATCCAACATGAGGAATGTGGTAGCATTATATAAAGATCATTGGGCGAATCATTGGGGGAGAAACGTTGGAAACTACGACACCAAGATTAGCAGTTGTATTGATTCCCTCAACTCTTGGAACAAGAAAAGACTTGAAGGGAATCTTAAGGCAACCATACATAGAAAAGAAGATGAAAGTAAGACTTTGCTTGCCTCCAATGGAAATGTCGATACTGACCAAGTAAGAGTGGCTGAAAGGGATCTTAATGTTCTTCTTGAGGAGGAGGATTTTATTGGAGAACGAGATCGAGAGATGTGTGGCTTAGTTGTGGCGACAAAAACACGAAATGGTTTCACTCGAAAGCGTCGCATCGAAAGAAAAGAAATCACTTGAGTGGAGTCTTTGATAAACAAGGGAGATGGGTGGAAGGGGAAGAGGAAATTGGCATCGTTGCTCAGAATTACTTCCAAAAGCTCTGTTCCAAGCGGGGAGGCGGTCACAAGAGTGCTGGAAGGTGTCCAAAAGTCAATATCTGAGTCTATGAATAGAATTTTGCTGGAAAAATTTACTAGAAGTGAGATTGAAGGAGCTCTCAAGGCTATGCATCCCCTAAAAGCCCCAGGTCCTGATGGGGCTCATGCTCTTTTCTTTAAACACTAGTCGAAGGATGTTGGCCAGGAAACCGTGGAAATTTGCTTGAAAGTTCTTAATGACAGGGAGAACGTTAGGCCTCTGAATAAAACTCTGATTGCTCTAATCCCTAAAGATCAAAAGCCTACCCAGATGCAGGATTTTCGCCCTATCAGTCTCTGTAATGTCATCTACAAGATCATCGCTAAGGTTCTGGCAAATAGACTTAGAAACGTTTTGGACACGGTCATTTCTCCAACACAAGCAGCTTTTGTCCCTGACAGACAAATCTCTGACAATGTGA

mRNA sequence

ATGCCGAAGATTTGGAACCTAGATGCCCCAACCTCTTTTGATCGTGCTGGTAAAGGAATCTCTAGGAAAACTACAGTGGCTCATGGAAACGAGGTAGGTCAGTTTGAGGGAGTGGATTTAGATGACGAAAGATGTAGGGGAGGCAAATCGCTAAGGGTGAGAGTGAAAATTGATATTCAAAAGCCTCTAAAGCGTGTTGTGAGGTTCAAAATTGGTTCAATGATAGAGGAGGCCTGGGCTCCCATAACCTATGAAAAACTTCCTGATTTGTGCTTTTGTTGCGGGATTTTAGGGCATGGAGCCCAAGAGTGTGAGGAAAGAGGATCGGATCAAGCTGCTGAAATAGGACGATTTGGGGCGGGAAGTCAACGAGAGAAGGAGACTGGGCAGGCTCAGATTGACGACCAGAGTTTAAGCGGCCAACCAGAAAAGAAAAAGGAAAACATTTTTGGTCGGCGGGTTCAATCGAAAACGGGAGGGGTTATTCTCAAGACAAAAGCTGACAATTTCCAGCAGCCCACCAACTCTCCTTTATTTTCTAACCCAGATTTGGTAGGTACTAATGATTTGCCTTGGGTGATGGGTGGAGACTTTAATGAAATTCTTTATAACAACGAAAAGGAGGGAGGCGCCACCCAGAATGCTAGACAAATAAAGGACTTCAAGGATACGATAAATTATTGCAACCTCATTGACCAGGGCTTCAGGGGAAGCTGTTTTACTTGGTTTAAAAATAGGAACAACAAAAATATCTCTGTAATGTCATCTACAAGATCATCGCTAAGGTTCTGGCAAATAGACTTAGAAACGTTTTGGACACGGTCATTTCTCCAACACAAGCAGCTTTTGTCCCTGACAGACAAATCTCTGACAATGTGA

Coding sequence (CDS)

ATGCCGAAGATTTGGAACCTAGATGCCCCAACCTCTTTTGATCGTGCTGGTAAAGGAATCTCTAGGAAAACTACAGTGGCTCATGGAAACGAGGTAGGTCAGTTTGAGGGAGTGGATTTAGATGACGAAAGATGTAGGGGAGGCAAATCGCTAAGGGTGAGAGTGAAAATTGATATTCAAAAGCCTCTAAAGCGTGTTGTGAGGTTCAAAATTGGTTCAATGATAGAGGAGGCCTGGGCTCCCATAACCTATGAAAAACTTCCTGATTTGTGCTTTTGTTGCGGGATTTTAGGGCATGGAGCCCAAGAGTGTGAGGAAAGAGGATCGGATCAAGCTGCTGAAATAGGACGATTTGGGGCGGGAAGTCAACGAGAGAAGGAGACTGGGCAGGCTCAGATTGACGACCAGAGTTTAAGCGGCCAACCAGAAAAGAAAAAGGAAAACATTTTTGGTCGGCGGGTTCAATCGAAAACGGGAGGGGTTATTCTCAAGACAAAAGCTGACAATTTCCAGCAGCCCACCAACTCTCCTTTATTTTCTAACCCAGATTTGGTAGGTACTAATGATTTGCCTTGGGTGATGGGTGGAGACTTTAATGAAATTCTTTATAACAACGAAAAGGAGGGAGGCGCCACCCAGAATGCTAGACAAATAAAGGACTTCAAGGATACGATAAATTATTGCAACCTCATTGACCAGGGCTTCAGGGGAAGCTGTTTTACTTGGTTTAAAAATAGGAACAACAAAAATATCTCTGTAATGTCATCTACAAGATCATCGCTAAGGTTCTGGCAAATAGACTTAGAAACGTTTTGGACACGGTCATTTCTCCAACACAAGCAGCTTTTGTCCCTGACAGACAAATCTCTGACAATGTGA

Protein sequence

MPKIWNLDAPTSFDRAGKGISRKTTVAHGNEVGQFEGVDLDDERCRGGKSLRVRVKIDIQKPLKRVVRFKIGSMIEEAWAPITYEKLPDLCFCCGILGHGAQECEERGSDQAAEIGRFGAGSQREKETGQAQIDDQSLSGQPEKKKENIFGRRVQSKTGGVILKTKADNFQQPTNSPLFSNPDLVGTNDLPWVMGGDFNEILYNNEKEGGATQNARQIKDFKDTINYCNLIDQGFRGSCFTWFKNRNNKNISVMSSTRSSLRFWQIDLETFWTRSFLQHKQLLSLTDKSLTM
Homology
BLAST of Tan0021425 vs. NCBI nr
Match: PPR85699.1 (hypothetical protein GOBAR_AA34985 [Gossypium barbadense])

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-17
Identity = 67/240 (27.92%), Postives = 113/240 (47.08%), Query Frame = 0

Query: 20  ISRKTTVAHGNEVGQFEGVDLDDERCRGGKSLRVRVKIDIQKPLKRVVRFKIGSMIEEAW 79
           + R+  +  GN +G+   +D  D      + +R++VKIDI KPLKRV+R  +     E  
Sbjct: 135 MDRQMAIDVGNALGELVAIDWKDHFGGWTEFMRIKVKIDILKPLKRVLRI-VNKDGGERI 194

Query: 80  APITYEKLPDLCFCCGILGHGAQECEERGSDQAAEIGRF-GAGSQREKETGQAQIDDQSL 139
             + YE+LPD C+ CG++GH  + C     +    +      G Q + +  +   +++S+
Sbjct: 195 GVLKYERLPDFCYLCGLIGHTLKRCNNNKRENEESLTNLREKGEQNDAKGEEKAYEEESM 254

Query: 140 SGQPEKKK-----ENIFGRRVQSKTGGV-ILKTKADNFQQPTNSPLFSNPDLVGTN-DLP 199
           S  P +++     E       + K+GG+ +L  K  N         +     V +  +  
Sbjct: 255 STSPLERRPIRPMEGCLAVSSEGKSGGLALLWRKGMNTNPSLRQQAWDMLRRVQSMVNEA 314

Query: 200 WVMGGDFNEILYNNEKEGGATQNARQIKDFKDTINYCNLIDQGFRGSCFTWFKNRNNKNI 252
           W++GGDF  IL N+EKEGG      Q+ +F + +   NL D       FTW  NR+   +
Sbjct: 315 WIVGGDFKAILNNSEKEGGRRNPKIQLDEFSNFLEELNLTDVMTCNGWFTWTNNRDGTRL 373

BLAST of Tan0021425 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 2.8e-16
Identity = 81/301 (26.91%), Postives = 128/301 (42.52%), Query Frame = 0

Query: 20  ISRKTTVAHGNEVGQFEGVDLDDERCRGGKSLRVRVKIDIQKPLKRVVRFKIGSMIEEAW 79
           I+R   +  GN +G FE  D DD     G +LRVRV +DI KPL+R ++  +   I  AW
Sbjct: 141 ITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAW 200

Query: 80  APITYEKLPDLCFCCGILG------HGA------------------QE--CEERG----S 139
            PI YE+LPD C+ CG+        +G+                  QE   ++ G    S
Sbjct: 201 IPIQYERLPDFCYHCGLSSSRKKHQYGSWLRYQGTVKPTMPQMKQPQEDLLDKSGNNSFS 260

Query: 140 DQAAEIGRFGAGSQREKETGQAQIDDQSLSGQPEKK-----------------KENIFGR 199
              + +G    G Q    TG   I  +S   +  KK                 ++ I  +
Sbjct: 261 SSTSPVGAGSQGVQSAPATGPIAIPMESPVTETPKKGAEPSQQGKSPVLIDEGEQRINVK 320

Query: 200 RVQS-----KTGGVILK-TKADNFQQPTNSPLFSN---------------------PDLV 247
            + +     K+G   ++ + +D+  +   SP FS                        + 
Sbjct: 321 EISNLNPPLKSGAPSMQPSYSDSLTRMDLSPGFSGRFTGFYGHPAAHKRHLTWELLRRIS 380

BLAST of Tan0021425 vs. NCBI nr
Match: PPD84469.1 (hypothetical protein GOBAR_DD18598 [Gossypium barbadense])

HSP 1 Score: 92.4 bits (228), Expect = 6.8e-15
Identity = 69/257 (26.85%), Postives = 115/257 (44.75%), Query Frame = 0

Query: 20  ISRKTTVAHGNEVGQFEGVDLDDERCRGGKSLRVRVKIDIQKPLKRVVRFKIGSMIEEAW 79
           + R+T +  GN +G+   +D  D      + LR+++KI+I  P++RVV+F +G    E  
Sbjct: 136 MDRQTALDVGNAIGELVAIDWKDRNGGWTEFLRLKIKINISNPVRRVVKF-VGRDEIEII 195

Query: 80  APITYEKLPDLCFCCGILGHGAQECEERGSDQAAEIGRFGAG---------SQREKETGQ 139
             + YE+LP  C+ CG++GH  ++C+ +  D    +     G         S +E+  G+
Sbjct: 196 CALKYERLPTFCYYCGLIGHTVKKCKSKDRDSGFNVLNLQYGSWLRVNFVASNQERGIGR 255

Query: 140 AQIDDQSLSGQPEKKKENI-------FGRRVQSKTGGVILKTKADNFQQPTNSPLFSNPD 199
             I+       P + KE          G+  Q +      +   DN      +  + N D
Sbjct: 256 NGIEIMVKKTPPNEDKEGSKTDTREDSGQMEQKRNEKGCEEESLDNDNSFRFTGFYGNAD 315

Query: 200 -------------LVGTNDLPWVMGGDFNEILYNNEKEGGATQNARQIKDFKDTINYCNL 247
                        +  T    W++GGDFN IL N EKEGG  +    I DF+  ++  +L
Sbjct: 316 PNKRRSSWDMLRKVGDTVREKWIIGGDFNAILDNAEKEGGRRKPKALIDDFRAVVDELSL 375

BLAST of Tan0021425 vs. NCBI nr
Match: XP_027118730.1 (uncharacterized protein LOC113735973 [Coffea arabica])

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-14
Identity = 69/243 (28.40%), Postives = 105/243 (43.21%), Query Frame = 0

Query: 29  GNEVGQFEGVDLDDERCRGGKSLRVRVKIDIQKPLKRVVRFKIGSMIEEAWAPITYEKLP 88
           G+++G +EG D        GK LR+RVK+++  PLKR+++  I   + E      YE+LP
Sbjct: 147 GSKLGTYEGFDAKG-GLSVGKFLRIRVKLNLNNPLKRLMKLLIEGAVCE--VHFRYERLP 206

Query: 89  DLCFCCGILGHGAQECEERGSDQAAEIGRFGAGSQREKETGQAQIDDQSLSGQPEKKKEN 148
             C  CG +GHG ++CE++     A       GS    +    QI    ++ Q       
Sbjct: 207 THCNFCGRIGHGERDCEDKLDVAKASDSPSLVGSPDPTQRPDVQIPSTLVATQ------- 266

Query: 149 IFGRRVQSKTGGVILKTKADNFQQPTN-----------SPLFSNPDLVGTND-------- 208
              R +       IL T       PT            +  + +P+              
Sbjct: 267 --RRPLSLDNDQPILSTALVTDSSPTAQVHMTDSSWRLTGFYGHPEATKRKHTWDIMRKL 326

Query: 209 -----LPWVMGGDFNEILYNNEKEGGATQNARQIKDFKDTINYCNLIDQGFRGSCFTWFK 248
                LPWV  GDFNE+L   E +G   +   QI +F+  ++ CNL D G  G+ FTW +
Sbjct: 327 STLCCLPWVCMGDFNEVLTQEEFQGATWRPKWQIMNFRKALSDCNLFDLGHEGNRFTWCR 377

BLAST of Tan0021425 vs. NCBI nr
Match: PPD94756.1 (hypothetical protein GOBAR_DD08216 [Gossypium barbadense])

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-14
Identity = 73/242 (30.17%), Postives = 110/242 (45.45%), Query Frame = 0

Query: 20  ISRKTTVAHGNEVGQFEGVDLDDERCRGGKSLRVRVKIDIQKPLKRVVRF--KIGSMIEE 79
           + R T +  GN +G+   +D  D      K +R +VKID+ KPL+R+V+   K GS   E
Sbjct: 135 MDRHTALDIGNAIGELVTIDWKDRFGGWTKFMRFKVKIDVIKPLRRIVKLVDKDGS---E 194

Query: 80  AWAPITYEKLPDLCFCCGILGHGAQECEERGSDQAAEIGRFGAGSQREKETGQAQIDDQS 139
               I YEKLPD C+ CGI+GH  + C    +   AE+ +   G  R+   G   +    
Sbjct: 195 MTGLIKYEKLPDFCYFCGIIGHTLKTC----TINMAEMIKERKGFMRK---GPCLL---- 254

Query: 140 LSGQPEKKKENIFGRRVQSKTGGVILKTKADNFQQPTNSPLFSNPDLV--------GTND 199
           L G      E       + K+GG+ L  +        N   F    L+           +
Sbjct: 255 LFGM-----EGCLAVSSEGKSGGLALFWREGISVMVQNYSKFHIDSLLWDMLKRVKSKVN 314

Query: 200 LPWVMGGDFNEILYNNEKEGGATQNARQIKDFKDTINYCNLIDQGFRGSCFTWFKNRNNK 252
             W++GGD N IL ++EKEGG  ++   + +F+D +   NL D       FTW  NR+  
Sbjct: 315 ERWIVGGDSNAILNSSEKEGGNRKSKTAMDNFRDIMEELNLNDVKTNNGWFTWSNNRDGS 357

BLAST of Tan0021425 vs. ExPASy TrEMBL
Match: A0A2N9E949 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3389 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-20
Identity = 80/284 (28.17%), Postives = 122/284 (42.96%), Query Frame = 0

Query: 18  KGISRKTTVAHGNEVGQFEGVDLDDERCRGGKSLRVRVKIDIQKPLKRVVRFKIGSMIEE 77
           KG++ +T  + GN +G  E +D+ ++    G+ +RV+V+ID+  PL R  R K+G   E 
Sbjct: 78  KGMNEETATSVGNALGVLEEIDIPEDGITWGEFMRVQVRIDVSMPLLRRQRVKLGKE-ES 137

Query: 78  AWAPITYEKLPDLCFCCGILGHGAQECEERGSDQAAEIG-RFGAGSQREKETGQAQIDDQ 137
            W  + YEKLP  C+ CGILGH  +EC      + ++ G  +  GS      G+ +    
Sbjct: 138 IWVTLKYEKLPTFCYNCGILGHSERECRLVTQHEKSKDGNHYEYGSWLRATPGRRKTGSV 197

Query: 138 SLSGQPEKKKENIF-------GRRVQSKTGGVILKTKADNFQQP-----------TNSP- 197
           +  G   K+   ++       G +  S T   IL         P            N+P 
Sbjct: 198 TFEGAFPKRNGIVYHNQLNGGGCKAASPTAMSILSWNCQGLGNPWTVRHLHELVKENNPS 257

Query: 198 ----------------------LFSNPDLVG-------------TNDLPWVMGGDFNEIL 247
                                  +  P+  G              N LPWV+ GDFNEIL
Sbjct: 258 ILFLMETRMKAVEMEKTWRITGFYGCPERSGRLDSWKLLKHLGDQNRLPWVVIGDFNEIL 317

BLAST of Tan0021425 vs. ExPASy TrEMBL
Match: A0A2P5W3R4 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA34985 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.1e-18
Identity = 67/240 (27.92%), Postives = 113/240 (47.08%), Query Frame = 0

Query: 20  ISRKTTVAHGNEVGQFEGVDLDDERCRGGKSLRVRVKIDIQKPLKRVVRFKIGSMIEEAW 79
           + R+  +  GN +G+   +D  D      + +R++VKIDI KPLKRV+R  +     E  
Sbjct: 135 MDRQMAIDVGNALGELVAIDWKDHFGGWTEFMRIKVKIDILKPLKRVLRI-VNKDGGERI 194

Query: 80  APITYEKLPDLCFCCGILGHGAQECEERGSDQAAEIGRF-GAGSQREKETGQAQIDDQSL 139
             + YE+LPD C+ CG++GH  + C     +    +      G Q + +  +   +++S+
Sbjct: 195 GVLKYERLPDFCYLCGLIGHTLKRCNNNKRENEESLTNLREKGEQNDAKGEEKAYEEESM 254

Query: 140 SGQPEKKK-----ENIFGRRVQSKTGGV-ILKTKADNFQQPTNSPLFSNPDLVGTN-DLP 199
           S  P +++     E       + K+GG+ +L  K  N         +     V +  +  
Sbjct: 255 STSPLERRPIRPMEGCLAVSSEGKSGGLALLWRKGMNTNPSLRQQAWDMLRRVQSMVNEA 314

Query: 200 WVMGGDFNEILYNNEKEGGATQNARQIKDFKDTINYCNLIDQGFRGSCFTWFKNRNNKNI 252
           W++GGDF  IL N+EKEGG      Q+ +F + +   NL D       FTW  NR+   +
Sbjct: 315 WIVGGDFKAILNNSEKEGGRRNPKIQLDEFSNFLEELNLTDVMTCNGWFTWTNNRDGTRL 373

BLAST of Tan0021425 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-16
Identity = 81/301 (26.91%), Postives = 128/301 (42.52%), Query Frame = 0

Query: 20  ISRKTTVAHGNEVGQFEGVDLDDERCRGGKSLRVRVKIDIQKPLKRVVRFKIGSMIEEAW 79
           I+R   +  GN +G FE  D DD     G +LRVRV +DI KPL+R ++  +   I  AW
Sbjct: 141 ITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAW 200

Query: 80  APITYEKLPDLCFCCGILG------HGA------------------QE--CEERG----S 139
            PI YE+LPD C+ CG+        +G+                  QE   ++ G    S
Sbjct: 201 IPIQYERLPDFCYHCGLSSSRKKHQYGSWLRYQGTVKPTMPQMKQPQEDLLDKSGNNSFS 260

Query: 140 DQAAEIGRFGAGSQREKETGQAQIDDQSLSGQPEKK-----------------KENIFGR 199
              + +G    G Q    TG   I  +S   +  KK                 ++ I  +
Sbjct: 261 SSTSPVGAGSQGVQSAPATGPIAIPMESPVTETPKKGAEPSQQGKSPVLIDEGEQRINVK 320

Query: 200 RVQS-----KTGGVILK-TKADNFQQPTNSPLFSN---------------------PDLV 247
            + +     K+G   ++ + +D+  +   SP FS                        + 
Sbjct: 321 EISNLNPPLKSGAPSMQPSYSDSLTRMDLSPGFSGRFTGFYGHPAAHKRHLTWELLRRIS 380

BLAST of Tan0021425 vs. ExPASy TrEMBL
Match: A0A2N9FNT0 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16695 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 77/280 (27.50%), Postives = 119/280 (42.50%), Query Frame = 0

Query: 29  GNEVGQFEGVDLDDERCRGGKSLRVRVKIDIQKPL--KRVVRFKIGSMIEEAWAPITYEK 88
           G  +G  E V   ++   G   +RVR++++I +PL   R+V+F+ G    + W    YE+
Sbjct: 141 GRSIGLVEKVAASEDERGGENCMRVRIRLEINRPLCRGRLVKFEEGI---KGWVAFRYER 200

Query: 89  LPDLCFCCGILGHGAQEC----EERGSDQAAEIGRFGA------------------GSQR 148
           LP+ C+ CG L HG ++C    ++R +    E  +FGA                  G+Q 
Sbjct: 201 LPNFCYWCGCLDHGEKDCDVGIQQRQTSNKQEY-QFGAWLRATSDRAPHKTVVIVPGNQP 260

Query: 149 EKETGQAQIDDQSLSG----QPEKKKENIFGRRVQSKTGGVILKTKAD--NFQQPTNSPL 208
           +      + D          QP  + E++   R Q + G     T+ D  N  +   +P 
Sbjct: 261 KSRDKSCRQDPPCRKDPPQHQPTVEAEDL--TRNQRENGKTTDNTEEDPENEMEIEQNPG 320

Query: 209 FSNPDLVGTND--------------------------------LPWVMGGDFNEILYNNE 247
           F  PD +  +D                                LPW   GDFNEI+ ++E
Sbjct: 321 FPIPDRIHNSDQPWRLTCFYGAPETHLREHSWNLLRTLNGQHALPWCCFGDFNEIVRSSE 380

BLAST of Tan0021425 vs. ExPASy TrEMBL
Match: A0A2N9HDU2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38224 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-15
Identity = 85/328 (25.91%), Postives = 138/328 (42.07%), Query Frame = 0

Query: 10  PTSFDRAGKGISRKTTVAHGNEVGQFEGVDLDDERCRGGKSLRVRVKIDIQKPLKRVVRF 69
           P S+D+    + ++  V+ G  +G+       DE   GG+ +R+RVK++I KPL R  + 
Sbjct: 91  PWSYDKI-LSLKKEVAVSLGRSIGEVLTTTDSDEELGGGRVMRIRVKVNINKPLCRGRKI 150

Query: 70  KIGSMIEEAWAPITYEKLPDLCFCCGILGHGAQECE--------ERGSDQA--AEIGRFG 129
            + +  +++WA   YE+LP+ C+ CG+L HG ++C+         R  DQA  A +   G
Sbjct: 151 GLANG-KDSWAAFRYERLPNFCYWCGMLTHGEKDCDFWLRNHSTLRQEDQAYGAWLRAPG 210

Query: 130 AGSQREKE---TGQAQ----------IDDQSLSGQPE-KKKENIFGRRVQSKTGGV--IL 189
               R+ E    G+AQ          + D+ +   P  K+  N+  R+ +   G    + 
Sbjct: 211 NRPYRKVEIHVAGRAQNGGTVKASRGVTDEVVVDLPAGKEPVNVPERQAEKNPGSTPDLG 270

Query: 190 KTKADNFQQP------------TNSPLFSN-----PDLVGTND----------------- 248
           K+   +F++              N     N     P   GTN+                 
Sbjct: 271 KSDRGSFEEKLKEIDKEMGFLNENLGELKNRRRLVPSPAGTNELLKLELSWAWEPMYSSR 330

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
PPR85699.11.5e-1727.92hypothetical protein GOBAR_AA34985 [Gossypium barbadense][more]
XP_022158377.12.8e-1626.91uncharacterized protein LOC111024874 [Momordica charantia][more]
PPD84469.16.8e-1526.85hypothetical protein GOBAR_DD18598 [Gossypium barbadense][more]
XP_027118730.11.5e-1428.40uncharacterized protein LOC113735973 [Coffea arabica][more]
PPD94756.11.5e-1430.17hypothetical protein GOBAR_DD08216 [Gossypium barbadense][more]
Match NameE-valueIdentityDescription
A0A2N9E9491.5e-2028.17CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3389... [more]
A0A2P5W3R47.1e-1827.92Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA34985 PE=4 SV... [more]
A0A6J1DX301.3e-1626.91uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A2N9FNT01.1e-1527.50RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16695 ... [more]
A0A2N9HDU21.9e-1525.91Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38224 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 153..280
e-value: 1.4E-5
score: 26.9
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 188..250
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 57..105
e-value: 1.4E-11
score: 43.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..151
NoneNo IPR availablePANTHERPTHR31286:SF26BNAC07G15150D PROTEINcoord: 21..147
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 21..147
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 91..106
score: 8.548371

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0021425.1Tan0021425.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding