Tan0021386 (gene) Snake gourd v1

Overview


Name	Tan0021386
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty1-copia retrotransposon protein
Location	LG02: 85386090 .. 85386659 (-)
RNA-Seq Expression	Tan0021386
Synteny	Tan0021386

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAACCACTCGATGGAGCAAATTACTGTCGTTGGTCCCAGAAGCTGCTGATCTTCTTCGAGCAACCGGAGGTGGACTATGTTCTGACCACAGAATATTCAGATCGGGACCGATCCAACCTTACTGTTCTTTATCGGGACCGATCCACCCTTGCTGATCCGGCCACATCTACTGACACACAATCTGTCCCTGTTCTTCCTGATCCTGAAAAATATGAGAAAGATAACAAGACAGTAAGGGGTCATCTGCTCAACCATATGACAGATTCCTTGTTTGATATGTTTGTCGTTCAGAAATCTGCAAAGGTCATCTGGAGTACTCTCAAATCCAGATATAGTGGCGATGATGCTGGTAGGAAAAAATACGTTGTCGGTAAGTGGTTGCAGTTTCAGATGAAGGATGACAAACCGGTGATCGACCAGGTTCATGAGTATGAAAATCTGGTGGCCAATGTACTGTCAGAAGGGATGAAAATGTGCGAAATCCTTCAGGCAGATGTTTTGCTTGAAAAATTTCCACCTTCCTAG

mRNA sequence

ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAACCACTCGATGGAGCAAATTACTGTCGTTGGTCCCAGAAGCTGCTGATCTTCTTCGAGCAACCGGAGGTGGACTATGTCATCTGGAGTACTCTCAAATCCAGATATAGTGGCGATGATGCTGGTAGGAAAAAATACGTTGTCGGTAAGTGGTTGCAGTTTCAGATGAAGGATGACAAACCGGTGATCGACCAGGTTCATGAGTATGAAAATCTGGTGGCCAATGTACTGTCAGAAGGGATGAAAATGTGCGAAATCCTTCAGGCAGATGTTTTGCTTGAAAAATTTCCACCTTCCTAG

Coding sequence (CDS)

ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAACCACTCGATGGAGCAAATTACTGTCGTTGGTCCCAGAAGCTGCTGATCTTCTTCGAGCAACCGGAGGTGGACTATGTCATCTGGAGTACTCTCAAATCCAGATATAGTGGCGATGATGCTGGTAGGAAAAAATACGTTGTCGGTAAGTGGTTGCAGTTTCAGATGAAGGATGACAAACCGGTGATCGACCAGGTTCATGAGTATGAAAATCTGGTGGCCAATGTACTGTCAGAAGGGATGAAAATGTGCGAAATCCTTCAGGCAGATGTTTTGCTTGAAAAATTTCCACCTTCCTAG

Protein sequence

MSIKSGKVLPDLSKLEPLDGANYCRWSQKLLIFFEQPEVDYVIWSTLKSRYSGDDAGRKKYVVGKWLQFQMKDDKPVIDQVHEYENLVANVLSEGMKMCEILQADVLLEKFPPS

Homology

[Close]

BLAST of Tan0021386 vs. NCBI nr
Match: KAA0058501.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 8.7e-43
Identity = 98/148 (66.22%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYCRWSQKLLIFFEQPEVDYVI---------------- 60
           MSIK S K+L DLSKLEPLDG NY RWSQKLLIFFEQ EVDYV+                
Sbjct: 1   MSIKTSNKILSDLSKLEPLDGMNYRRWSQKLLIFFEQLEVDYVLTTDPPSSDLPTTTSTS 60

Query: 61  -----------------WSTLKSRYSGDDAGRKKYVVGKWLQFQMKDDKPVIDQVHEYEN 115
                             STL+SRY GDDAGRKKYVVGKWLQFQM D KPV++Q+HEYEN
Sbjct: 61  FDPESSTGPPTTVAVTDQSTLESRYGGDDAGRKKYVVGKWLQFQMTDGKPVVEQIHEYEN 120

[Close]

BLAST of Tan0021386 vs. NCBI nr
Match: TYK07244.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 8.7e-43
Identity = 98/148 (66.22%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYCRWSQKLLIFFEQPEVDYVI---------------- 60
           MSIK S K+L DLSKLEPLDG NY RWSQKLLIFFEQ EVDYV+                
Sbjct: 1   MSIKTSNKILSDLSKLEPLDGMNYRRWSQKLLIFFEQLEVDYVLTTDPPSSDLPTTTSTS 60

Query: 61  -----------------WSTLKSRYSGDDAGRKKYVVGKWLQFQMKDDKPVIDQVHEYEN 115
                             STL+SRY GDDAGRKKYVVGKWLQFQM D KPV++Q+HEYEN
Sbjct: 61  FDPESSTGPPTTVAVTDQSTLESRYGGDDAGRKKYVVGKWLQFQMTDGKPVVEQIHEYEN 120

[Close]

BLAST of Tan0021386 vs. NCBI nr
Match: TYK02676.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 103/193 (53.37%), Postives = 108/193 (55.96%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYCRWSQKLLIFFEQPEVDYV----------------- 60
           MSIK S K+LPDLSKLEPLDG NY RWSQKLLIFFEQ EVDYV                 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTPDPPTTTSTS 60

Query: 61  ------------------------------------------------------------ 115
                                                                       
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0021386 vs. NCBI nr
Match: TYK30642.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-41
Identity = 97/151 (64.24%), Postives = 106/151 (70.20%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYCRWSQKLLIFFEQPEVDYV----------------- 60
           MSIK S K+LPDLSKLEPLDG NY RWS+KLLIFFEQ E DYV                 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSKKLLIFFEQLEFDYVLTTDLSSSDPSATTSTS 60

Query: 61  -------------------IWSTLKSRYSGDDAGRKKYVVGKWLQFQMKDDKPVIDQVHE 115
                              IWSTL+SRY GDDAGRKKYVVGKWLQF+M DDKPV++Q+HE
Sbjct: 61  SNPESSTGPSTTVAVTDQDIWSTLESRY-GDDAGRKKYVVGKWLQFRMTDDKPVVEQIHE 120

[Close]

BLAST of Tan0021386 vs. NCBI nr
Match: KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 2.8e-41
Identity = 102/193 (52.85%), Postives = 108/193 (55.96%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYCRWSQKLLIFFEQPEVDYV----------------- 60
           MSIK S K+LPDLSKLEPLDG NY RWSQKLLIFFEQ EVDYV                 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  ------------------------------------------------------------ 115
                                                                       
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0021386 vs. ExPASy TrEMBL
Match: A0A5A7UYD5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00940 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.2e-43
Identity = 98/148 (66.22%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYCRWSQKLLIFFEQPEVDYVI---------------- 60
           MSIK S K+L DLSKLEPLDG NY RWSQKLLIFFEQ EVDYV+                
Sbjct: 1   MSIKTSNKILSDLSKLEPLDGMNYRRWSQKLLIFFEQLEVDYVLTTDPPSSDLPTTTSTS 60

Query: 61  -----------------WSTLKSRYSGDDAGRKKYVVGKWLQFQMKDDKPVIDQVHEYEN 115
                             STL+SRY GDDAGRKKYVVGKWLQFQM D KPV++Q+HEYEN
Sbjct: 61  FDPESSTGPPTTVAVTDQSTLESRYGGDDAGRKKYVVGKWLQFQMTDGKPVVEQIHEYEN 120

[Close]

BLAST of Tan0021386 vs. ExPASy TrEMBL
Match: A0A5D3C7N0 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001400 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.2e-43
Identity = 98/148 (66.22%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYCRWSQKLLIFFEQPEVDYVI---------------- 60
           MSIK S K+L DLSKLEPLDG NY RWSQKLLIFFEQ EVDYV+                
Sbjct: 1   MSIKTSNKILSDLSKLEPLDGMNYRRWSQKLLIFFEQLEVDYVLTTDPPSSDLPTTTSTS 60

Query: 61  -----------------WSTLKSRYSGDDAGRKKYVVGKWLQFQMKDDKPVIDQVHEYEN 115
                             STL+SRY GDDAGRKKYVVGKWLQFQM D KPV++Q+HEYEN
Sbjct: 61  FDPESSTGPPTTVAVTDQSTLESRYGGDDAGRKKYVVGKWLQFQMTDGKPVVEQIHEYEN 120

[Close]

BLAST of Tan0021386 vs. ExPASy TrEMBL
Match: A0A5D3BWR7 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00230 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.1e-42
Identity = 103/193 (53.37%), Postives = 108/193 (55.96%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYCRWSQKLLIFFEQPEVDYV----------------- 60
           MSIK S K+LPDLSKLEPLDG NY RWSQKLLIFFEQ EVDYV                 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTPDPPTTTSTS 60

Query: 61  ------------------------------------------------------------ 115
                                                                       
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0021386 vs. ExPASy TrEMBL
Match: A0A5D3E411 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00650 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.0e-41
Identity = 97/151 (64.24%), Postives = 106/151 (70.20%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYCRWSQKLLIFFEQPEVDYV----------------- 60
           MSIK S K+LPDLSKLEPLDG NY RWS+KLLIFFEQ E DYV                 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSKKLLIFFEQLEFDYVLTTDLSSSDPSATTSTS 60

Query: 61  -------------------IWSTLKSRYSGDDAGRKKYVVGKWLQFQMKDDKPVIDQVHE 115
                              IWSTL+SRY GDDAGRKKYVVGKWLQF+M DDKPV++Q+HE
Sbjct: 61  SNPESSTGPSTTVAVTDQDIWSTLESRY-GDDAGRKKYVVGKWLQFRMTDDKPVVEQIHE 120

[Close]

BLAST of Tan0021386 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.4e-41
Identity = 102/193 (52.85%), Postives = 108/193 (55.96%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYCRWSQKLLIFFEQPEVDYV----------------- 60
           MSIK S K+LPDLSKLEPLDG NY RWSQKLLIFFEQ EVDYV                 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  ------------------------------------------------------------ 115
                                                                       
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0021386 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 57.8 bits (138), Expect = 6.7e-09
Identity = 29/92 (31.52%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 23  YCRWSQKLLIFFEQPEVDYVIWSTLKSRYSGDDAGRKKYVVGKWLQFQMKDDKPVIDQVH 82
           Y R+SQK   F    E    +W  LK  Y  D++  K+  V K+++F+M +++P+++QV 
Sbjct: 273 YRRYSQK---FKHAKE----LWDELKWVYQCDESKSKRSQVRKYIEFRMVEERPILEQVQ 332

Query: 83  EYENLVANVLSEGMKMCEILQADVLLEKFPPS 115
            +  +  +++S GM + E      ++ KFPPS
Sbjct: 333 VFNKIADSIVSAGMFLDEAFHVSTIISKFPPS 357

The following BLAST results are available for this feature:

BLAST of Tan0021386 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0021386 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058501.1	8.7e-43	66.22	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07244.1	8.7e-43	66.22	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK02676.1	1.3e-41	53.37	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK30642.1	2.2e-41	64.24	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056761.1	2.8e-41	52.85	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0021386 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UYD5	4.2e-43	66.22	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C7N0	4.2e-43	66.22	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BWR7	6.1e-42	53.37	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3E411	1.0e-41	64.24	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C5T2	1.4e-41	52.85	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Tan0021386 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	6.7e-09	31.52	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 28..114 e-value: 1.8E-7 score: 31.0
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 35..114
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 35..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021386.1	Tan0021386.1	mRNA