Tan0021374 (gene) Snake gourd v1

Overview
NameTan0021374
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNA-binding protein pno1
LocationLG01: 20142701 .. 20144273 (-)
RNA-Seq ExpressionTan0021374
SyntenyTan0021374
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTAATTTTGAAAGAAATTGTTAAAACCCTAAAAGCCGCCTCTTATTCCTCCCCTCCATCTTCACGCTTTCTCCTCTTCCTCTTCCTCTTTGCACCTTCCCGCCGCTGCCGTCTCCGTCGCTCTCGGTGTCGCCGTCGCACCCCTTCTTCCCTGACTTTTCTACTCTTTCTTGGTCTCAGGTATTCTCTCTATTTCCTATCTTTCTCTTTTAAGCTTCACTCCTTACAGTGTGTGAGACCCCATGGGAACTGATTTGATTTAGTTTTGCCTAATTTTCATTCGTTTGGTTGCTCATTCGTACAATTCGAGACCATTGCATTCTATTGTTGTGTTGGTCAAATTTGAAATTGGATTATAGTATTTTAGAACCCGGTGTTGTTTTTCGTTCAATCTTTCTCCTTTATTATTAGTTAATAGTTATATTGGATTATAGTAGTTTAGAATCAATCCATTTTTTACCTGAGGGCTTTTTGTTTCTTTAACAAAATTTTCCCAGGAGGCAGCTGTTGAAGTTTATTAAGATTATATATGCCTTCAATTATGCTGCCTATCTTGTTGATGGGTTTATATATTCTTTGCTTTGTTTAACTGTAGTTTTTTGGGTGTTTACAGTGTTGAAACTCGGAACAATTCTATAATGCAGTCGATGGAAGCCTCCACTTCCATGGAAGTGGAAACAGTTTCAACACAAACGAAAGATGTAGTTAGCACATTGCCAACAAAACCACAATTTGATCCTCTAAAGCCTCATGAGATGAACGATGGTCGAGTTCAGTTCCGAAAGGTCTCTGTTCCTCCGCATCGCTATTCTCCTCTCAAGAAAGCATGGATGGAGATTTACACCCCAATTTATGAGCAGATGAAAATTGACATCCGAATGAATCTCAAGGCACGGAAAGTTGAATTGAAAACCAGAGCAGACACACCTGACATCAGTAACTTGCAAAAGTGTGCAGATTTTGTTCATGCCTTCATGCTCGGTTTCGATGTGATCGATGCCATTGCCCTCTTACGGGTGGATGAACTCTATGTGGAATCTTTTGAGATTAAAGATGTTAAAACATTGCGAGGCGAGCACTTGTCCCGTGCCATAGGAAGATTGTCTGGTAAAGCTGGTAAGACAAAGTTTGCCATCGAAAATGCCACGAAGACGAGGATAGTTATTGCAGACACCAAGATTCACATATTAGGATCCTTTGCTAATATCAAGATTGCAAGGGATTCTCTTTGCAGCCTTATTTTAGGGTCCCCTGCAGGTAAAGTTTATTCAAAACTGAGAGCAGTGACAGCCAGATTGGCAGAAAGGTTTTGATCTTTCATGACTATTGTACTTTTTATGAGCTTCTCTTGATTAATGATTTTTGCGCATTGGTTATTTGAGGAAGAGTGTATAACTATGTCCAAAAGCTTGTGCATTGAAGTTTTGTTCGAGATACTGATTACTAATCAATCTATATTCAGAAAATGGGCATCAAGTGATTGGCATTTGTTGGTGTCGTTTTTGCTTGTCGATGGAGGTTTGTATGTTATAGTTGTGTCCATTGATTGAAGTAACATTGATATCCATTTGGG

mRNA sequence

CTTAATTTTGAAAGAAATTGTTAAAACCCTAAAAGCCGCCTCTTATTCCTCCCCTCCATCTTCACGCTTTCTCCTCTTCCTCTTCCTCTTTGCACCTTCCCGCCGCTGCCGTCTCCGTCGCTCTCGGTGTCGCCGTCGCACCCCTTCTTCCCTGACTTTTCTACTCTTTCTTGGTCTCAGTGTTGAAACTCGGAACAATTCTATAATGCAGTCGATGGAAGCCTCCACTTCCATGGAAGTGGAAACAGTTTCAACACAAACGAAAGATGTAGTTAGCACATTGCCAACAAAACCACAATTTGATCCTCTAAAGCCTCATGAGATGAACGATGGTCGAGTTCAGTTCCGAAAGGTCTCTGTTCCTCCGCATCGCTATTCTCCTCTCAAGAAAGCATGGATGGAGATTTACACCCCAATTTATGAGCAGATGAAAATTGACATCCGAATGAATCTCAAGGCACGGAAAGTTGAATTGAAAACCAGAGCAGACACACCTGACATCAGTAACTTGCAAAAGTGTGCAGATTTTGTTCATGCCTTCATGCTCGGTTTCGATGTGATCGATGCCATTGCCCTCTTACGGGTGGATGAACTCTATGTGGAATCTTTTGAGATTAAAGATGTTAAAACATTGCGAGGCGAGCACTTGTCCCGTGCCATAGGAAGATTGTCTGGTAAAGCTGGTAAGACAAAGTTTGCCATCGAAAATGCCACGAAGACGAGGATAGTTATTGCAGACACCAAGATTCACATATTAGGATCCTTTGCTAATATCAAGATTGCAAGGGATTCTCTTTGCAGCCTTATTTTAGGGTCCCCTGCAGGTAAAGTTTATTCAAAACTGAGAGCAGTGACAGCCAGATTGGCAGAAAGGTTTTGATCTTTCATGACTATTGTACTTTTTATGAGCTTCTCTTGATTAATGATTTTTGCGCATTGGTTATTTGAGGAAGAGTGTATAACTATGTCCAAAAGCTTGTGCATTGAAGTTTTGTTCGAGATACTGATTACTAATCAATCTATATTCAGAAAATGGGCATCAAGTGATTGGCATTTGTTGGTGTCGTTTTTGCTTGTCGATGGAGGTTTGTATGTTATAGTTGTGTCCATTGATTGAAGTAACATTGATATCCATTTGGG

Coding sequence (CDS)

ATGCAGTCGATGGAAGCCTCCACTTCCATGGAAGTGGAAACAGTTTCAACACAAACGAAAGATGTAGTTAGCACATTGCCAACAAAACCACAATTTGATCCTCTAAAGCCTCATGAGATGAACGATGGTCGAGTTCAGTTCCGAAAGGTCTCTGTTCCTCCGCATCGCTATTCTCCTCTCAAGAAAGCATGGATGGAGATTTACACCCCAATTTATGAGCAGATGAAAATTGACATCCGAATGAATCTCAAGGCACGGAAAGTTGAATTGAAAACCAGAGCAGACACACCTGACATCAGTAACTTGCAAAAGTGTGCAGATTTTGTTCATGCCTTCATGCTCGGTTTCGATGTGATCGATGCCATTGCCCTCTTACGGGTGGATGAACTCTATGTGGAATCTTTTGAGATTAAAGATGTTAAAACATTGCGAGGCGAGCACTTGTCCCGTGCCATAGGAAGATTGTCTGGTAAAGCTGGTAAGACAAAGTTTGCCATCGAAAATGCCACGAAGACGAGGATAGTTATTGCAGACACCAAGATTCACATATTAGGATCCTTTGCTAATATCAAGATTGCAAGGGATTCTCTTTGCAGCCTTATTTTAGGGTCCCCTGCAGGTAAAGTTTATTCAAAACTGAGAGCAGTGACAGCCAGATTGGCAGAAAGGTTTTGA

Protein sequence

MQSMEASTSMEVETVSTQTKDVVSTLPTKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Homology
BLAST of Tan0021374 vs. ExPASy Swiss-Prot
Match: Q9VR89 (RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.0e-66
Identity = 123/187 (65.78%), Postives = 156/187 (83.42%), Query Frame = 0

Query: 37  PHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADT 96
           P +    R + RKVSVPPHRYS LK+ WM+I+TP+ E MK+ IR N+KAR+VEL+   +T
Sbjct: 53  PPKAKRARSELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPET 112

Query: 97  PDISNLQKCADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLS 156
           PDI+NLQ+ ADFV AF+ GF+V DA+ALLR+++L+VESFEIKDVKTLRG+H SRAIGRL+
Sbjct: 113 PDIANLQRGADFVRAFLCGFEVDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLA 172

Query: 157 GKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAV 216
           GK G+TKF IEN TKTRIV+AD+KIHILGS+ NI++AR ++C+LILGSP  KVY  LRAV
Sbjct: 173 GKGGRTKFTIENVTKTRIVLADSKIHILGSYQNIQLARRAVCNLILGSPPSKVYGNLRAV 232

Query: 217 TARLAER 224
            +RL+ER
Sbjct: 233 ASRLSER 239

BLAST of Tan0021374 vs. ExPASy Swiss-Prot
Match: A7RP64 (RNA-binding protein pno1 OS=Nematostella vectensis OX=45351 GN=pno1 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.6e-65
Identity = 119/196 (60.71%), Postives = 157/196 (80.10%), Query Frame = 0

Query: 29  KPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKV 88
           +P F P+K  ++  G+ + RK+ VP HRY+PLK+ WM+I+TP+ E +K+ IR NL +R V
Sbjct: 43  RPSFPPVKAQKLAGGKSETRKIPVPSHRYTPLKENWMKIFTPVVEHLKLQIRFNLGSRHV 102

Query: 89  ELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHL 148
           E++   +T DI  +QK ADFV AF+LGF+V DA+AL+R+D+L++ESFEI DVK L+G+HL
Sbjct: 103 EIRASKETSDIGAVQKAADFVQAFILGFEVEDALALIRLDDLFLESFEIADVKPLKGDHL 162

Query: 149 SRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGK 208
           SRAIGR++GK GKTKF IEN TKTRIV+A+TKIHILGSF NIKIAR ++C+LILGSP  K
Sbjct: 163 SRAIGRVAGKGGKTKFTIENVTKTRIVLAETKIHILGSFQNIKIARTAICNLILGSPPSK 222

Query: 209 VYSKLRAVTARLAERF 225
           VY  +RAV +R AERF
Sbjct: 223 VYGNMRAVASRSAERF 238

BLAST of Tan0021374 vs. ExPASy Swiss-Prot
Match: Q29IG6 (RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=l(1)G0004 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.3e-65
Identity = 120/178 (67.42%), Postives = 153/178 (85.96%), Query Frame = 0

Query: 46  QFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKC 105
           + RKVSVPPHRYS LK+ WM+I+TP+ E MK+ IR N+KAR+VEL+   +TPDI+NLQK 
Sbjct: 60  ELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETPDIANLQKG 119

Query: 106 ADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFA 165
           ADFV AF+ GF+V DA+ALLR+++L+VE+FEIKDVKTLRG+H SRAIGRL+GK G+TKF 
Sbjct: 120 ADFVKAFLCGFEVDDALALLRLEDLFVETFEIKDVKTLRGDHQSRAIGRLAGKGGRTKFT 179

Query: 166 IENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAER 224
           IEN TKTRIV+AD+KIHILGS+ NI++AR ++C+LILGSP  KVY  LR+V +RL+ER
Sbjct: 180 IENVTKTRIVLADSKIHILGSYQNIQLARRAICNLILGSPPSKVYGNLRSVASRLSER 237

BLAST of Tan0021374 vs. ExPASy Swiss-Prot
Match: Q6VEU3 (RNA-binding protein PNO1 OS=Danio rerio OX=7955 GN=pno1 PE=2 SV=2)

HSP 1 Score: 249.2 bits (635), Expect = 4.4e-65
Identity = 124/211 (58.77%), Postives = 162/211 (76.78%), Query Frame = 0

Query: 15  VSTQTKDVVSTLPTK-PQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYE 74
           + TQT++  S+ P K P F  L   ++  G  + RKV VP HRY+PLK+ W++I+TPI E
Sbjct: 42  MDTQTEESSSSAPVKRPHFPALSGDQLGGGVDEMRKVPVPSHRYTPLKENWLKIFTPIVE 101

Query: 75  QMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRVDELYVE 134
            +++ +R NLK R+VE+KT  +T DI  L + ADFV AF+LGF V DA+AL+R+DEL++E
Sbjct: 102 NLQLQVRFNLKTRQVEIKTCKETQDIGALTRAADFVKAFVLGFQVEDALALIRLDELFLE 161

Query: 135 SFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIA 194
           +F++ DVK L+G+HLSRAIGR++GK GKTKF IEN TKTRIV+ADTKIHILGSF NIK+A
Sbjct: 162 TFDVTDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTKTRIVLADTKIHILGSFQNIKMA 221

Query: 195 RDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           R ++C+LILGSP  KVY  LRAV  R AERF
Sbjct: 222 RTAICNLILGSPPSKVYGNLRAVATRSAERF 252

BLAST of Tan0021374 vs. ExPASy Swiss-Prot
Match: Q6VBQ6 (RNA-binding protein PNO1 OS=Oryzias latipes OX=8090 GN=pno1 PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 8.2e-64
Identity = 118/196 (60.20%), Postives = 156/196 (79.59%), Query Frame = 0

Query: 29  KPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYEQMKIDIRMNLKARKV 88
           +P F P+   ++  G  + RKV+VP HRY+PLK+ W++I+TPI E +++ +R NLK R V
Sbjct: 49  RPHFPPISADKLR-GPDEMRKVAVPAHRYTPLKENWLKIFTPIVENLQLQVRFNLKTRNV 108

Query: 89  ELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHL 148
           E+KT  +T DI+ L K ADF+ AF+LGF V DA+AL+R+DEL++ESF++ DVK L+G+HL
Sbjct: 109 EIKTCKETQDIAALTKAADFIKAFVLGFQVDDAMALIRLDELFLESFDVTDVKPLKGDHL 168

Query: 149 SRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGK 208
           SRAIGR++GK GKTKF IEN TKTRIV+ADTKIHILGSF NIK+AR ++C+LILGSP  K
Sbjct: 169 SRAIGRIAGKGGKTKFTIENVTKTRIVLADTKIHILGSFQNIKMARTAICNLILGSPPSK 228

Query: 209 VYSKLRAVTARLAERF 225
           VY  +RAV +R AERF
Sbjct: 229 VYGNIRAVASRTAERF 243

BLAST of Tan0021374 vs. NCBI nr
Match: XP_008449001.1 (PREDICTED: RNA-binding protein pno1 [Cucumis melo])

HSP 1 Score: 425.6 bits (1093), Expect = 2.6e-115
Identity = 219/224 (97.77%), Postives = 222/224 (99.11%), Query Frame = 0

Query: 1   MQSMEASTSMEVETVSTQTKDVVSTLPTKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQS EASTSMEVET+STQTKDVVSTLP KPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEASTSMEVETISTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIY+QMKID+RMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDVRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

BLAST of Tan0021374 vs. NCBI nr
Match: XP_022932417.1 (RNA-binding protein pno1 [Cucurbita moschata])

HSP 1 Score: 422.9 bits (1086), Expect = 1.7e-114
Identity = 218/224 (97.32%), Postives = 222/224 (99.11%), Query Frame = 0

Query: 1   MQSMEASTSMEVETVSTQTKDVVSTLPTKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQS EASTSMEVETVST+TK+VVSTLP KPQFDPLKPHEMNDGR+QFRKVSVPPHRY+PL
Sbjct: 1   MQSTEASTSMEVETVSTETKNVVSTLPPKPQFDPLKPHEMNDGRIQFRKVSVPPHRYTPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

BLAST of Tan0021374 vs. NCBI nr
Match: KAG7015597.1 (RNA-binding protein pno1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 421.8 bits (1083), Expect = 3.7e-114
Identity = 217/224 (96.88%), Postives = 222/224 (99.11%), Query Frame = 0

Query: 1   MQSMEASTSMEVETVSTQTKDVVSTLPTKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQS E+STSMEVETVST+TK+VVSTLP KPQFDPLKPHEMNDGR+QFRKVSVPPHRY+PL
Sbjct: 1   MQSTESSTSMEVETVSTETKNVVSTLPPKPQFDPLKPHEMNDGRIQFRKVSVPPHRYTPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

BLAST of Tan0021374 vs. NCBI nr
Match: XP_038904158.1 (RNA-binding protein pno1 [Benincasa hispida])

HSP 1 Score: 420.6 bits (1080), Expect = 8.3e-114
Identity = 216/224 (96.43%), Postives = 222/224 (99.11%), Query Frame = 0

Query: 1   MQSMEASTSMEVETVSTQTKDVVSTLPTKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQS+EASTSMEVET+STQTK+VVSTLP KPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSIEASTSMEVETISTQTKNVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWM+IYTPI++QMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVH FMLGFDVID
Sbjct: 61  KKAWMDIYTPIFDQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHGFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

BLAST of Tan0021374 vs. NCBI nr
Match: KAG6577533.1 (Gamma-tubulin complex component 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 420.2 bits (1079), Expect = 1.1e-113
Identity = 216/224 (96.43%), Postives = 221/224 (98.66%), Query Frame = 0

Query: 1   MQSMEASTSMEVETVSTQTKDVVSTLPTKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQS E+STSMEVETVST+TK+VVSTLP KPQFDPLKPHEMNDGR+QFRKVSVPPHRY+PL
Sbjct: 710 MQSTESSTSMEVETVSTETKNVVSTLPPKPQFDPLKPHEMNDGRIQFRKVSVPPHRYTPL 769

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYEQMKIDIRMNLK RKVELKTRADTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 770 KKAWMEIYTPIYEQMKIDIRMNLKVRKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 829

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 830 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 889

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 890 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 933

BLAST of Tan0021374 vs. ExPASy TrEMBL
Match: A0A1S3BLP2 (RNA-binding protein pno1 OS=Cucumis melo OX=3656 GN=LOC103491005 PE=3 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.3e-115
Identity = 219/224 (97.77%), Postives = 222/224 (99.11%), Query Frame = 0

Query: 1   MQSMEASTSMEVETVSTQTKDVVSTLPTKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQS EASTSMEVET+STQTKDVVSTLP KPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEASTSMEVETISTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIY+QMKID+RMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDVRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

BLAST of Tan0021374 vs. ExPASy TrEMBL
Match: A0A6J1EWL7 (RNA-binding protein pno1 OS=Cucurbita moschata OX=3662 GN=LOC111438772 PE=3 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 8.1e-115
Identity = 218/224 (97.32%), Postives = 222/224 (99.11%), Query Frame = 0

Query: 1   MQSMEASTSMEVETVSTQTKDVVSTLPTKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQS EASTSMEVETVST+TK+VVSTLP KPQFDPLKPHEMNDGR+QFRKVSVPPHRY+PL
Sbjct: 1   MQSTEASTSMEVETVSTETKNVVSTLPPKPQFDPLKPHEMNDGRIQFRKVSVPPHRYTPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

BLAST of Tan0021374 vs. ExPASy TrEMBL
Match: A0A6J1HQ98 (RNA-binding protein pno1-like OS=Cucurbita maxima OX=3661 GN=LOC111465109 PE=3 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 9.0e-114
Identity = 216/224 (96.43%), Postives = 221/224 (98.66%), Query Frame = 0

Query: 1   MQSMEASTSMEVETVSTQTKDVVSTLPTKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQ  EASTSMEVETVST+TK+VVSTLP KPQFDPLKPHEMNDGR+QFRKVSVPPHRY+PL
Sbjct: 1   MQPTEASTSMEVETVSTETKNVVSTLPPKPQFDPLKPHEMNDGRIQFRKVSVPPHRYTPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAF+LGFDVID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFILGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

BLAST of Tan0021374 vs. ExPASy TrEMBL
Match: A0A0A0L7D9 (KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G045150 PE=3 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 9.0e-114
Identity = 217/224 (96.88%), Postives = 221/224 (98.66%), Query Frame = 0

Query: 1   MQSMEASTSMEVETVSTQTKDVVSTLPTKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQS EASTSM+VET+STQTKDVVSTLP KPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSNEASTSMDVETISTQTKDVVSTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWM+IYTPIY+QMKIDIRMNLKARKVELKTRADTPDISNLQK ADFVHAFMLGFDVID
Sbjct: 61  KKAWMDIYTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

BLAST of Tan0021374 vs. ExPASy TrEMBL
Match: A0A6J1KXN9 (RNA-binding protein pno1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498497 PE=3 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.5e-113
Identity = 218/224 (97.32%), Postives = 218/224 (97.32%), Query Frame = 0

Query: 1   MQSMEASTSMEVETVSTQTKDVVSTLPTKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQS EASTSMEVE VSTQ K VVSTLP KP FDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEASTSMEVEAVSTQPKPVVSTLPPKPHFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

BLAST of Tan0021374 vs. TAIR 10
Match: AT3G13230.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 345.1 bits (884), Expect = 4.2e-95
Identity = 176/219 (80.37%), Postives = 198/219 (90.41%), Query Frame = 0

Query: 4   MEASTSMEVETVSTQTKDVVSTLPTKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKA 63
           M  ST MEVET +  T      LP KP F PLK HEM+DG+VQFRK++VPP+RYSPLKKA
Sbjct: 1   MAESTQMEVETATEGT----VPLPPKPTFKPLKAHEMSDGKVQFRKIAVPPNRYSPLKKA 60

Query: 64  WMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIA 123
           W++IYTPIY+QMK+DIRMNLKARKVELKTRADTPDISNLQK ADFVHAFMLGFD+ DAI+
Sbjct: 61  WLDIYTPIYDQMKVDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDIPDAIS 120

Query: 124 LLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHI 183
           LLR+DELYVESFEIKDVKTL+GEHLSRAIGRLSGK GKTKFAIEN+TKTRIVIADT+IHI
Sbjct: 121 LLRMDELYVESFEIKDVKTLKGEHLSRAIGRLSGKGGKTKFAIENSTKTRIVIADTRIHI 180

Query: 184 LGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAE 223
           LG+F+NIK+AR SLCSLI+GSPAGKVYSKLR+V+ARL E
Sbjct: 181 LGAFSNIKVARSSLCSLIMGSPAGKVYSKLRSVSARLNE 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9VR893.0e-6665.78RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV... [more]
A7RP642.6e-6560.71RNA-binding protein pno1 OS=Nematostella vectensis OX=45351 GN=pno1 PE=3 SV=1[more]
Q29IG63.3e-6567.42RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=l... [more]
Q6VEU34.4e-6558.77RNA-binding protein PNO1 OS=Danio rerio OX=7955 GN=pno1 PE=2 SV=2[more]
Q6VBQ68.2e-6460.20RNA-binding protein PNO1 OS=Oryzias latipes OX=8090 GN=pno1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
XP_008449001.12.6e-11597.77PREDICTED: RNA-binding protein pno1 [Cucumis melo][more]
XP_022932417.11.7e-11497.32RNA-binding protein pno1 [Cucurbita moschata][more]
KAG7015597.13.7e-11496.88RNA-binding protein pno1 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038904158.18.3e-11496.43RNA-binding protein pno1 [Benincasa hispida][more]
KAG6577533.11.1e-11396.43Gamma-tubulin complex component 2, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A1S3BLP21.3e-11597.77RNA-binding protein pno1 OS=Cucumis melo OX=3656 GN=LOC103491005 PE=3 SV=1[more]
A0A6J1EWL78.1e-11597.32RNA-binding protein pno1 OS=Cucurbita moschata OX=3662 GN=LOC111438772 PE=3 SV=1[more]
A0A6J1HQ989.0e-11496.43RNA-binding protein pno1-like OS=Cucurbita maxima OX=3661 GN=LOC111465109 PE=3 S... [more]
A0A0A0L7D99.0e-11496.88KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G045150 PE=3 SV=... [more]
A0A6J1KXN91.5e-11397.32RNA-binding protein pno1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
Match NameE-valueIdentityDescription
AT3G13230.14.2e-9580.37RNA-binding KH domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 129..202
e-value: 1.7E-4
score: 31.0
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10K Homology domain, type 1coord: 128..224
e-value: 1.1E-22
score: 81.9
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 129..223
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR12826RIBONUCLEASE Ycoord: 4..224
IPR039912Pre-rRNA-processing protein PNO1-likePANTHERPTHR12826:SF13RNA-BINDING PROTEIN PNO1coord: 4..224

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0021374.1Tan0021374.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005730 nucleolus
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding