Tan0021347 (gene) Snake gourd v1

Overview


Name	Tan0021347
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	nuclear transport factor 2
Location	LG05: 83326591 .. 83328204 (-)
RNA-Seq Expression	Tan0021347
Synteny	Tan0021347

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTGTTTCAACTTACAAGTCTGTGTTCTTTCAAATTAGAGTGCTTGCAAATAGAGAAAGGAGATGGAAGAAGATCAAGCTGATATTGTGGGGAAGGCGTTTGTGGAACATTATTACCAATTGTTTGACAATGATAGAGCCTCTGTTTCTTGTTTGTACCAACCTGACTCTATGCTCACTTTCGAGGGCCAGCAATTCTTAGGCGTTGACGACATCTCTACTAAGTTTCAGCAATTGCCATTTGAACGGTGCCGACATGTCGTCAGCACCGTCGATGCCCAGCCTTCCATCGCTCCCGGTTCTTTTCTTATCTTCGTCAGCGGCAGCCTCGAGTTGCCCGACGAAGAACACCCGTTGAGATTCAGTCAGGTTAGGCTCCATTTGATAATCAAAGCTCTTTTTGATAATCATTTGATTTTTTGTTTTTAGTTTTTGAAATTAAAGCATAAAAATATTACTTCTACTTGTATGGTAGATTTCTTCGTGTTTCTTATTTACTTTGTACCTGTTTCTAAAAATCAAGCTAAATTTGGAAAACTTAAAAAAAAAAAAAAATAGTTTTCAAAAAGTAGTTTTTGTTTTTTAAATTTGGCTAGAAAGTTAAATGATTTCTTGAGAAAAATAGAAATCGTTGTAGAGAATATGAAGAAAAACGATGAAAAACAAGCATAATTTTAAGAAATCAAGAACCAAAAGTTAAGCTTAATTTTTGGTTTTTAGTTTTTGAAAATTGAACTTATTTTCTTATAGTTTGTTGTTTTCATTTTTCTTAAGCAAACATTTGAATTTCTAGTCAAATTTCAAAAACAAAAATAAGTTTTGAAAACTATTTCTTTTTAATTTTCAAAACTTGGCTTCATTTTTTAAAACATAAGTAAAAAATAATAGATAAAAAATATGAAATCCTATAGGTAAAAGTATTACTTATAGACTTAATTTTAAAAAAACAAACCGGGTTTGTTATCCAGTTTAATTCCAAGAGAATTTGTACATAAAACTTCTTCCTCTAATATTATTTAAATGGATGAATTATGGAGAATTGCATTTTTTTTATTCGTATTTTTTAACAGAATTATGTAATATCGCAGATGTTTCACTTGGTACCCACATTACAGGGCAACCTTTTCGTTCAAAACGATATTTTTCGCCTCAATTACGGCTAGTTCAGGGTTTGTTCGAGACTGCATTTGAACAGAGAAACGCTGTCGTTTATTGGGATATGATTTGTTTTCTGGTTCTTATCTAAATATACAAATTCCTGATTTTGTTATTCTGTTGTATGTTCTGTTTCGTATCTCTCTTTATTATTTTCGGGCTTTGAATGTCGGCCCAATAACTGAGCCCGTTGACTTTCCTGGCCCAATTTCTCGCGTCAAAGAGGCCCATGGTGGTAAATGAGATGGTTGCTTGAGACGTAGAGATCAAAAAAAAGAAAGAAATTTCTGGTCCTTTTTTGAGTTCAACCAGACCTGGAGTGAAAGATGTTTGAATAATAAATCTCTTCATCCAGAATGTATACCAAAATCAATCAAACTATTCTCAAGTTAGTACGTAAAGATCAAAGTTAGTCTTCGATCAATTTAAGGAAATATTTTTGTGACTAGCGAACAAAAA

mRNA sequence

GCTTGTTTCAACTTACAAGTCTGTGTTCTTTCAAATTAGAGTGCTTGCAAATAGAGAAAGGAGATGGAAGAAGATCAAGCTGATATTGTGGGGAAGGCGTTTGTGGAACATTATTACCAATTGTTTGACAATGATAGAGCCTCTGTTTCTTGTTTGTACCAACCTGACTCTATGCTCACTTTCGAGGGCCAGCAATTCTTAGGCGTTGACGACATCTCTACTAAGTTTCAGCAATTGCCATTTGAACGGTGCCGACATGTCGTCAGCACCGTCGATGCCCAGCCTTCCATCGCTCCCGGTTCTTTTCTTATCTTCGTCAGCGGCAGCCTCGAGTTGCCCGACGAAGAACACCCGTTGAGATTCAGTCAGATGTTTCACTTGGTACCCACATTACAGGGCAACCTTTTCGTTCAAAACGATATTTTTCGCCTCAATTACGGCTAGTTCAGGGTTTGTTCGAGACTGCATTTGAACAGAGAAACGCTGTCGTTTATTGGGATATGATTTGTTTTCTGGTTCTTATCTAAATATACAAATTCCTGATTTTGTTATTCTGTTGTATGTTCTGTTTCGTATCTCTCTTTATTATTTTCGGGCTTTGAATGTCGGCCCAATAACTGAGCCCGTTGACTTTCCTGGCCCAATTTCTCGCGTCAAAGAGGCCCATGGTGGTAAATGAGATGGTTGCTTGAGACGTAGAGATCAAAAAAAAGAAAGAAATTTCTGGTCCTTTTTTGAGTTCAACCAGACCTGGAGTGAAAGATGTTTGAATAATAAATCTCTTCATCCAGAATGTATACCAAAATCAATCAAACTATTCTCAAGTTAGTACGTAAAGATCAAAGTTAGTCTTCGATCAATTTAAGGAAATATTTTTGTGACTAGCGAACAAAAA

Coding sequence (CDS)

ATGGAAGAAGATCAAGCTGATATTGTGGGGAAGGCGTTTGTGGAACATTATTACCAATTGTTTGACAATGATAGAGCCTCTGTTTCTTGTTTGTACCAACCTGACTCTATGCTCACTTTCGAGGGCCAGCAATTCTTAGGCGTTGACGACATCTCTACTAAGTTTCAGCAATTGCCATTTGAACGGTGCCGACATGTCGTCAGCACCGTCGATGCCCAGCCTTCCATCGCTCCCGGTTCTTTTCTTATCTTCGTCAGCGGCAGCCTCGAGTTGCCCGACGAAGAACACCCGTTGAGATTCAGTCAGATGTTTCACTTGGTACCCACATTACAGGGCAACCTTTTCGTTCAAAACGATATTTTTCGCCTCAATTACGGCTAG

Protein sequence

MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDIFRLNYG

Homology

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BLAST of Tan0021347 vs. ExPASy Swiss-Prot
Match: Q9C7F5 (Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.1e-36
Identity = 72/125 (57.60%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 1   MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPF 60
           M +   D V KAFVEHYY  FD +R  ++ LYQ  SMLTFEGQ+  GV  I  K   LPF
Sbjct: 1   MSQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPF 60

Query: 61  ERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDI 120
           ++C+H +STVD QPS      L+FVSG+L+L  EEH L+FSQMFHL+PT QG+ +V NDI
Sbjct: 61  QQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDI 120

Query: 121 FRLNY 126
           FRLNY
Sbjct: 121 FRLNY 125

[Close]

BLAST of Tan0021347 vs. ExPASy Swiss-Prot
Match: Q9XJ54 (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 9.1e-36
Identity = 73/121 (60.33%), Postives = 87/121 (71.90%), Query Frame = 0


Query: 6   ADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRH 65
           AD V KAFVEHYY+ FD +R ++  LYQ  SMLTFEGQQFLG   I+ K   LPF +C H
Sbjct: 3   ADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQCHH 62

Query: 66  VVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDIFRLNY 125
            ++TVD QPS   G  L+FVSGSL    +EHPL+FSQMF L+P   GN +VQND+FRLNY
Sbjct: 63  DINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRLNY 122

Query: 126 G 127
           G
Sbjct: 123 G 122

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BLAST of Tan0021347 vs. ExPASy Swiss-Prot
Match: Q9FZK4 (Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-33
Identity = 68/119 (57.14%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 7   DIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHV 66
           D V KAFVEHYY  FD +R  +  LYQ  SMLTFEGQ+  G  +I  K   LPF++C+H 
Sbjct: 4   DAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQCKHN 63

Query: 67  VSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDIFRLNY 126
           ++TVD QPS   G  L+FVSG+L+L  E+H L+FSQMFHL+   QGN +V NDIFRLNY
Sbjct: 64  ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLISN-QGNYYVFNDIFRLNY 121

[Close]

BLAST of Tan0021347 vs. ExPASy Swiss-Prot
Match: Q10100 (Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ntf2 PE=3 SV=2)

HSP 1 Score: 119.0 bits (297), Expect = 3.8e-26
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 13  FVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVSTVDA 72
           F + YYQ FD+DR+ +S LY+ +SML+FEG Q  G   I  K   LPF+R +H +ST+DA
Sbjct: 11  FTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGTKAIVEKLVSLPFQRVQHRISTLDA 70

Query: 73  QPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDIFRLNYG 127
           QP+   GS ++ V+G L L +E+   R+SQ+FHLV    GN +V ND+FRLNYG
Sbjct: 71  QPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNN-NGNYYVLNDLFRLNYG 123

[Close]

BLAST of Tan0021347 vs. ExPASy Swiss-Prot
Match: Q8NJ52 (Nuclear transport factor 2 OS=Davidiella tassiana OX=29918 GN=NTF2 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.2e-25
Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 9   VGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVS 68
           + + F E YY+ FD DRA ++ LY+ +SMLTFE   FLG  +I  K Q+LPF+R  H V+
Sbjct: 7   IAQQFTEFYYKTFDTDRAQLAPLYRENSMLTFEQSPFLGTANIVGKLQELPFQRIEHQVA 66

Query: 69  TVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDIFRLNY 126
           TVDAQPS   G  L+ VSG+L + +E  P+ ++Q F L+P   G  +V ND+FRL Y
Sbjct: 67  TVDAQPSNESGGILVVVSGALLVEEERRPMSYTQTFQLLPA-DGAYYVFNDVFRLVY 122

[Close]

BLAST of Tan0021347 vs. NCBI nr
Match: XP_008441397.1 (PREDICTED: nuclear transport factor 2 [Cucumis melo])

HSP 1 Score: 227.3 bits (578), Expect = 7.6e-56
Identity = 105/126 (83.33%), Postives = 116/126 (92.06%), Query Frame = 0


Query: 1   MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPF 60
           MEE+Q DI+GKAFVEHYY LFDN+RAS+S LYQPDSMLTFEGQQ LGV+DISTK QQLPF
Sbjct: 1   MEEEQGDIIGKAFVEHYYHLFDNERASLSSLYQPDSMLTFEGQQILGVNDISTKLQQLPF 60

Query: 61  ERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDI 120
           ERCRHVVST+D QPS  PGS LIFVSGS+E+P+EEHPLR+SQMFHLVP+ QGNLFVQNDI
Sbjct: 61  ERCRHVVSTIDTQPSSVPGSILIFVSGSIEIPEEEHPLRYSQMFHLVPSPQGNLFVQNDI 120

Query: 121 FRLNYG 127
           FRLNYG
Sbjct: 121 FRLNYG 126

[Close]

BLAST of Tan0021347 vs. NCBI nr
Match: XP_022933198.1 (nuclear transport factor 2B [Cucurbita moschata] >KAG7019672.1 Nuclear transport factor 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.2 bits (570), Expect = 6.4e-55
Identity = 107/124 (86.29%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 3   EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFER 62
           E++ADIVGKAFVEHYYQLFDN+R S+S LYQPDSMLTFEGQQ LGVDDIS++ QQLPFER
Sbjct: 2   EEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFER 61

Query: 63  CRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDIFR 122
           CRHVVSTVD QPS  PGS LIFVSGSLELPDEEH LRFSQMFHLVPT QGNL VQNDIFR
Sbjct: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMFHLVPTAQGNLCVQNDIFR 121

Query: 123 LNYG 127
           LNYG
Sbjct: 122 LNYG 125

[Close]

BLAST of Tan0021347 vs. NCBI nr
Match: KAG6584071.1 (Nuclear transport factor 2B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.5 bits (563), Expect = 4.2e-54
Identity = 106/123 (86.18%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 3   EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFER 62
           E++ADIVGKAFVEHYYQLFDN+R S+S LYQPDSMLTFEGQQ LGVDDIS++ QQLPFER
Sbjct: 2   EEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFER 61

Query: 63  CRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDIFR 122
           CRHVVSTVD QPS  PGS LIFVSGSLELPDEEH LRFSQMFHLVPT QGNL VQNDIFR
Sbjct: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMFHLVPTAQGNLCVQNDIFR 121

Query: 123 LNY 126
           LNY
Sbjct: 122 LNY 124

[Close]

BLAST of Tan0021347 vs. NCBI nr
Match: XP_023519037.1 (nuclear transport factor 2B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.1 bits (562), Expect = 5.5e-54
Identity = 105/124 (84.68%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 3   EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFER 62
           E++ DIVGKAFVEHYYQLFDN+R S+S LYQPDSMLTFEGQQ LGVDDIS++ QQLPFER
Sbjct: 2   EEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFER 61

Query: 63  CRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDIFR 122
           CRHVVSTVD QPS  PGS LIFVSGSLELP+EEH LRFSQMFHLVPT QGNL VQNDIFR
Sbjct: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIFR 121

Query: 123 LNYG 127
           LNYG
Sbjct: 122 LNYG 125

[Close]

BLAST of Tan0021347 vs. NCBI nr
Match: XP_023001318.1 (nuclear transport factor 2B [Cucurbita maxima])

HSP 1 Score: 219.5 bits (558), Expect = 1.6e-53
Identity = 104/124 (83.87%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 3   EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFER 62
           E++ADIVGKAFVEHYYQLFDN+R S+S LYQPDSMLTFEGQQ LGV DIS++ QQLPFER
Sbjct: 2   EEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVHDISSRLQQLPFER 61

Query: 63  CRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDIFR 122
           CRHVVSTVD QPS  PGS LIFVSGSLELP+EEH LRFSQMFHLVPT QGNL +QNDIFR
Sbjct: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCIQNDIFR 121

Query: 123 LNYG 127
           LNYG
Sbjct: 122 LNYG 125

[Close]

BLAST of Tan0021347 vs. ExPASy TrEMBL
Match: A0A1S3B3B7 (nuclear transport factor 2 OS=Cucumis melo OX=3656 GN=LOC103485524 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.7e-56
Identity = 105/126 (83.33%), Postives = 116/126 (92.06%), Query Frame = 0


Query: 1   MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPF 60
           MEE+Q DI+GKAFVEHYY LFDN+RAS+S LYQPDSMLTFEGQQ LGV+DISTK QQLPF
Sbjct: 1   MEEEQGDIIGKAFVEHYYHLFDNERASLSSLYQPDSMLTFEGQQILGVNDISTKLQQLPF 60

Query: 61  ERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDI 120
           ERCRHVVST+D QPS  PGS LIFVSGS+E+P+EEHPLR+SQMFHLVP+ QGNLFVQNDI
Sbjct: 61  ERCRHVVSTIDTQPSSVPGSILIFVSGSIEIPEEEHPLRYSQMFHLVPSPQGNLFVQNDI 120

Query: 121 FRLNYG 127
           FRLNYG
Sbjct: 121 FRLNYG 126

[Close]

BLAST of Tan0021347 vs. ExPASy TrEMBL
Match: A0A6J1F427 (nuclear transport factor 2B OS=Cucurbita moschata OX=3662 GN=LOC111440050 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.1e-55
Identity = 107/124 (86.29%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 3   EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFER 62
           E++ADIVGKAFVEHYYQLFDN+R S+S LYQPDSMLTFEGQQ LGVDDIS++ QQLPFER
Sbjct: 2   EEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFER 61

Query: 63  CRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDIFR 122
           CRHVVSTVD QPS  PGS LIFVSGSLELPDEEH LRFSQMFHLVPT QGNL VQNDIFR
Sbjct: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMFHLVPTAQGNLCVQNDIFR 121

Query: 123 LNYG 127
           LNYG
Sbjct: 122 LNYG 125

[Close]

BLAST of Tan0021347 vs. ExPASy TrEMBL
Match: A0A6J1KQ62 (nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111495482 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.7e-54
Identity = 104/124 (83.87%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 3   EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFER 62
           E++ADIVGKAFVEHYYQLFDN+R S+S LYQPDSMLTFEGQQ LGV DIS++ QQLPFER
Sbjct: 2   EEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVHDISSRLQQLPFER 61

Query: 63  CRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDIFR 122
           CRHVVSTVD QPS  PGS LIFVSGSLELP+EEH LRFSQMFHLVPT QGNL +QNDIFR
Sbjct: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCIQNDIFR 121

Query: 123 LNYG 127
           LNYG
Sbjct: 122 LNYG 125

[Close]

BLAST of Tan0021347 vs. ExPASy TrEMBL
Match: A0A0A0LUU9 (NTF2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064690 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 101/124 (81.45%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 3   EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFER 62
           E++ DI+GKAFVEHYYQLFDN+RAS+S LYQPDSMLTFEGQQ LGV DIS+K QQLPFER
Sbjct: 2   EEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 61

Query: 63  CRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDIFR 122
           CRHVVST+D QPS   GS LIFVSGS+E+P+EEHPLRFSQMFHLVP+ +GNLFVQNDIFR
Sbjct: 62  CRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFR 121

Query: 123 LNYG 127
           LNYG
Sbjct: 122 LNYG 125

[Close]

BLAST of Tan0021347 vs. ExPASy TrEMBL
Match: A0A6J1CEC9 (nuclear transport factor 2 OS=Momordica charantia OX=3673 GN=LOC111010728 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.9e-52
Identity = 101/124 (81.45%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 3   EDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFER 62
           E+++++VG+AFVEHYYQLFDN+RASVS LYQP+SMLTFEGQ+ LGVDDIS++ QQLPFER
Sbjct: 2   EEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFER 61

Query: 63  CRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDIFR 122
           CRHVVST+D QPS A GS LIFVSGSLELP EEH LRFSQMFHLVPT QG+LFVQNDIFR
Sbjct: 62  CRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMFHLVPTSQGSLFVQNDIFR 121

Query: 123 LNYG 127
           LNYG
Sbjct: 122 LNYG 125

[Close]

BLAST of Tan0021347 vs. TAIR 10
Match: AT1G11570.2 (NTF2-like )

HSP 1 Score: 168.7 bits (426), Expect = 3.0e-42
Identity = 77/121 (63.64%), Postives = 95/121 (78.51%), Query Frame = 0


Query: 9   VGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVS 68
           V  AFV HYY LFDNDR+S+S LY P S+LTFEGQ   GVD+IS K +QLPF++C H++S
Sbjct: 12  VASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHLIS 71

Query: 69  TVDAQPSIAP---GSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDIFRLNY 127
           TVD+QPS      G  L+FVSGS++L  E+HPLRFSQ FHL+P LQG+ FVQN++FRLNY
Sbjct: 72  TVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQNEMFRLNY 131

[Close]

BLAST of Tan0021347 vs. TAIR 10
Match: AT1G27970.1 (nuclear transport factor 2B )

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-37
Identity = 72/125 (57.60%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 1   MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPF 60
           M +   D V KAFVEHYY  FD +R  ++ LYQ  SMLTFEGQ+  GV  I  K   LPF
Sbjct: 1   MSQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPF 60

Query: 61  ERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDI 120
           ++C+H +STVD QPS      L+FVSG+L+L  EEH L+FSQMFHL+PT QG+ +V NDI
Sbjct: 61  QQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDI 120

Query: 121 FRLNY 126
           FRLNY
Sbjct: 121 FRLNY 125

[Close]

BLAST of Tan0021347 vs. TAIR 10
Match: AT1G27970.2 (nuclear transport factor 2B )

HSP 1 Score: 143.7 bits (361), Expect = 1.0e-34
Identity = 68/121 (56.20%), Postives = 84/121 (69.42%), Query Frame = 0


Query: 1   MEEDQADIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPF 60
           M +   D V KAFVEHYY  FD +R  ++ LYQ  SMLTFEGQ+  GV  I  K   LPF
Sbjct: 1   MSQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPF 60

Query: 61  ERCRHVVSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDI 120
           ++C+H +STVD QPS      L+FVSG+L+L  EEH L+FSQMFHL+PT QG+ +V NDI
Sbjct: 61  QQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDI 120

Query: 121 F 122
           F
Sbjct: 121 F 121

[Close]

BLAST of Tan0021347 vs. TAIR 10
Match: AT1G27310.1 (nuclear transport factor 2A )

HSP 1 Score: 141.4 bits (355), Expect = 5.1e-34
Identity = 68/119 (57.14%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 7   DIVGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHV 66
           D V KAFVEHYY  FD +R  +  LYQ  SMLTFEGQ+  G  +I  K   LPF++C+H 
Sbjct: 4   DAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQCKHN 63

Query: 67  VSTVDAQPSIAPGSFLIFVSGSLELPDEEHPLRFSQMFHLVPTLQGNLFVQNDIFRLNY 126
           ++TVD QPS   G  L+FVSG+L+L  E+H L+FSQMFHL+   QGN +V NDIFRLNY
Sbjct: 64  ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLISN-QGNYYVFNDIFRLNY 121

[Close]

BLAST of Tan0021347 vs. TAIR 10
Match: AT1G11570.1 (NTF2-like )

HSP 1 Score: 131.0 bits (328), Expect = 6.9e-31
Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 9   VGKAFVEHYYQLFDNDRASVSCLYQPDSMLTFEGQQFLGVDDISTKFQQLPFERCRHVVS 68
           V  AFV HYY LFDNDR+S+S LY P S+LTFEGQ   GVD+IS K +QLPF++C H++S
Sbjct: 12  VASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHLIS 71

Query: 69  TVDAQPSIAP---GSFLIFVSGSLELPDEEHPLRFSQMFHL 107
           TVD+QPS      G  L+FVSGS++L  E+HPLRFSQ++ L
Sbjct: 72  TVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQVYLL 112

The following BLAST results are available for this feature:

BLAST of Tan0021347 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C7F5	4.1e-36	57.60	Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1	[more]
Q9XJ54	9.1e-36	60.33	Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2...	[more]
Q9FZK4	7.2e-33	57.14	Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1	[more]
Q10100	3.8e-26	50.00	Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843...	[more]
Q8NJ52	4.2e-25	47.86	Nuclear transport factor 2 OS=Davidiella tassiana OX=29918 GN=NTF2 PE=1 SV=1	[more]

BLAST of Tan0021347 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441397.1	7.6e-56	83.33	PREDICTED: nuclear transport factor 2 [Cucumis melo]	[more]
XP_022933198.1	6.4e-55	86.29	nuclear transport factor 2B [Cucurbita moschata] >KAG7019672.1 Nuclear transport...	[more]
KAG6584071.1	4.2e-54	86.18	Nuclear transport factor 2B, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023519037.1	5.5e-54	84.68	nuclear transport factor 2B [Cucurbita pepo subsp. pepo]	[more]
XP_023001318.1	1.6e-53	83.87	nuclear transport factor 2B [Cucurbita maxima]	[more]

BLAST of Tan0021347 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B3B7	3.7e-56	83.33	nuclear transport factor 2 OS=Cucumis melo OX=3656 GN=LOC103485524 PE=4 SV=1	[more]
A0A6J1F427	3.1e-55	86.29	nuclear transport factor 2B OS=Cucurbita moschata OX=3662 GN=LOC111440050 PE=4 S...	[more]
A0A6J1KQ62	7.7e-54	83.87	nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111495482 PE=4 SV=...	[more]
A0A0A0LUU9	1.7e-53	81.45	NTF2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064690 PE=4 S...	[more]
A0A6J1CEC9	1.9e-52	81.45	nuclear transport factor 2 OS=Momordica charantia OX=3673 GN=LOC111010728 PE=4 S...	[more]

BLAST of Tan0021347 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11570.2	3.0e-42	63.64	NTF2-like	[more]
AT1G27970.1	2.9e-37	57.60	nuclear transport factor 2B	[more]
AT1G27970.2	1.0e-34	56.20	nuclear transport factor 2B	[more]
AT1G27310.1	5.1e-34	57.14	nuclear transport factor 2A	[more]
AT1G11570.1	6.9e-31	60.40	NTF2-like	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.50		coord: 1..126 e-value: 8.2E-41 score: 141.0
None	No IPR available	PANTHER	PTHR12612:SF29	NTF2-LIKE PROTEIN	coord: 4..126
None	No IPR available	PANTHER	PTHR12612	NUCLEAR TRANSPORT FACTOR 2	coord: 4..126
IPR002075	Nuclear transport factor 2	PFAM	PF02136	NTF2	coord: 9..123 e-value: 3.0E-33 score: 114.9
IPR018222	Nuclear transport factor 2, eukaryote	PROSITE	PS50177	NTF2_DOMAIN	coord: 9..123 score: 30.354067
IPR018222	Nuclear transport factor 2, eukaryote	CDD	cd00780	NTF2	coord: 5..125 e-value: 1.59448E-40 score: 129.325
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 7..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021347.1	Tan0021347.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006913	nucleocytoplasmic transport
cellular_component	GO:0044613	nuclear pore central transport channel