Tan0021250 (gene) Snake gourd v1

Overview


Name	Tan0021250
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	zinc finger protein CONSTANS-LIKE 6
Location	LG08: 75273810 .. 75275558 (+)
RNA-Seq Expression	Tan0021250
Synteny	Tan0021250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAAGAGAGAAATGGGTTACAGTCCGTTGTTGAAGAGCCCAAAGAAAGAAGAAGAACAAGAAGTTCCAAATTCCATTTGGGACGATTTTAAAGCCTTTTTTGAGCTCAGTGATAATGAAGAAATTAAGCCACCGCTGCATCAGTTCGATGATTGCTCCAATAATGTTTATGGCGATCCAGTACTCCATTGGGACTTGATGGACCAATTTCATTTGGACCACGAAACAAACCACGGCGGTGATGGTGATGGTGATGGCGACGATGCGGATCAGGCGGAGATGTTCGGCTGCAGAGTCGTCCCGAAAGCTTGCTCGTCCGATGGCGATGGCGATGGCGAGATGATGATGAAAATGAAGAAGAAAGTTTCTTTGAACTTAAATCTCAACTATGAAGAGGTTTTGGAGGCATGGTCTGGCCGTGGATCTCTTTGGGCCTCTGGTTCTTCCCTTTCCAACCCAACTTATGCTCACTATGTAAGTTCCACTCGTGGTCTCGTCAAAAAAATTATTGAATGAAACTGTCACAATTTATATGATTCACATTTATTATACGTATTCTCAAAATTAAATTATACTATAGGCAATTTTTTAATGGACCTCATATTTCTCTAATTATATTGCACTCACTTACTAGTTTCACCAAATTCACCTTCTTCCTAGTTTCATAGTTTGTCCAAAATGGGAAAGAAAAAGTTTAAATCCCATTCAAGTTTTTAAGATTTTTATATTTTGTTCTTGGCTATATCCATTTTAGTTCTTAAAATTATCATCTCCATCTTCCATTTTATTTTTAACTATGGCCGGTAACATATAATCAAGTATGTGTGTAGTAATCTTATGATATAGAGAGTGATTCAAATTGGTTAAGACGAGAAGATTATTCTATGGATAAAATAGAATTTAAATTTAAAATAAAATTATATTCTAAATATATTTTTTTAATTTGTGGTTCTAAAATTTTAAAATGTAAAATTTATTTGAGTGAATCATTGAAATGTTGAATAGATGGGAGAGGTTCCAACCATGGAGGAAGAAAGAACAAGAAGAGTGCTGAGGTACAAGGAGAAGCGCCACACCAGATTGTTCTCCAAGAAGATAAGATACCAAGTTCGTAAGCTCAATGCAGAGAAAAGGCCACGAATAAAGGTGTATTCATTATTAAATATAACCCGTTCGATAATTATTTGATTTTTTATTTTTGAAAATTAAATTTATAAATACTATTTTCATTCTTTTTTGATATCTACTTTCTATTAAATAACTTTTAAAGAAATGTTAAAACTATAGTAAAAAAGCCACGAAGAAACCATCATAAATTTCAAAAACAGAAAACTAAAAACAAAATTGTCATCAAATGGAACATTTAATTAATTCAAATCCAACCACTTTTTTTTGTTTGTTTTTTTGTTTTTGTTTTACTTCCATCTTTAACTCACTGTTTTTTTTTTTTTTTTTTCTCAGGGGCGTTTTGTGAAGACTGTTTCGTGAAAAAAAAGGAAAAGAAAAAAAAGAAAAAAAAGTTCAAAATATCTCAACAAAAGTATCTCCAACTGTTCCCTTTTCTTTTCTCTCTCTCTATGAATATGCTTTTCTTCATTCTCTAAATGAAAATATCTAAAATGTTTACTCTTTTTCATTTCCGTGATACTCAGAACTTTTTGTGTGGTGGTGGTCCTCAAAGGTCCAACTTGCCATTAAAGATACGCTCTGAATTGACCATTCTTATTTGGCATTTGCTGATCAATCCC

mRNA sequence

AGAAAAGAGAGAAATGGGTTACAGTCCGTTGTTGAAGAGCCCAAAGAAAGAAGAAGAACAAGAAGTTCCAAATTCCATTTGGGACGATTTTAAAGCCTTTTTTGAGCTCAGTGATAATGAAGAAATTAAGCCACCGCTGCATCAGTTCGATGATTGCTCCAATAATGTTTATGGCGATCCAGTACTCCATTGGGACTTGATGGACCAATTTCATTTGGACCACGAAACAAACCACGGCGGTGATGGTGATGGTGATGGCGACGATGCGGATCAGGCGGAGATGTTCGGCTGCAGAGTCGTCCCGAAAGCTTGCTCGTCCGATGGCGATGGCGATGGCGAGATGATGATGAAAATGAAGAAGAAAGTTTCTTTGAACTTAAATCTCAACTATGAAGAGGTTTTGGAGGCATGGTCTGGCCGTGGATCTCTTTGGGCCTCTGGTTCTTCCCTTTCCAACCCAACTTATGCTCACTATATGGGAGAGGTTCCAACCATGGAGGAAGAAAGAACAAGAAGAGTGCTGAGGTACAAGGAGAAGCGCCACACCAGATTGTTCTCCAAGAAGATAAGATACCAAGTTCGTAAGCTCAATGCAGAGAAAAGGCCACGAATAAAGGGGCGTTTTGTGAAGACTGTTTCGTGAAAAAAAAGGAAAAGAAAAAAAAGAAAAAAAAGTTCAAAATATCTCAACAAAAAACTTTTTGTGTGGTGGTGGTCCTCAAAGGTCCAACTTGCCATTAAAGATACGCTCTGAATTGACCATTCTTATTTGGCATTTGCTGATCAATCCC

Coding sequence (CDS)

ATGGGTTACAGTCCGTTGTTGAAGAGCCCAAAGAAAGAAGAAGAACAAGAAGTTCCAAATTCCATTTGGGACGATTTTAAAGCCTTTTTTGAGCTCAGTGATAATGAAGAAATTAAGCCACCGCTGCATCAGTTCGATGATTGCTCCAATAATGTTTATGGCGATCCAGTACTCCATTGGGACTTGATGGACCAATTTCATTTGGACCACGAAACAAACCACGGCGGTGATGGTGATGGTGATGGCGACGATGCGGATCAGGCGGAGATGTTCGGCTGCAGAGTCGTCCCGAAAGCTTGCTCGTCCGATGGCGATGGCGATGGCGAGATGATGATGAAAATGAAGAAGAAAGTTTCTTTGAACTTAAATCTCAACTATGAAGAGGTTTTGGAGGCATGGTCTGGCCGTGGATCTCTTTGGGCCTCTGGTTCTTCCCTTTCCAACCCAACTTATGCTCACTATATGGGAGAGGTTCCAACCATGGAGGAAGAAAGAACAAGAAGAGTGCTGAGGTACAAGGAGAAGCGCCACACCAGATTGTTCTCCAAGAAGATAAGATACCAAGTTCGTAAGCTCAATGCAGAGAAAAGGCCACGAATAAAGGGGCGTTTTGTGAAGACTGTTTCGTGA

Protein sequence

MGYSPLLKSPKKEEEQEVPNSIWDDFKAFFELSDNEEIKPPLHQFDDCSNNVYGDPVLHWDLMDQFHLDHETNHGGDGDGDGDDADQAEMFGCRVVPKACSSDGDGDGEMMMKMKKKVSLNLNLNYEEVLEAWSGRGSLWASGSSLSNPTYAHYMGEVPTMEEERTRRVLRYKEKRHTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTVS

Homology

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BLAST of Tan0021250 vs. ExPASy Swiss-Prot
Match: Q9C9A9 (Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana OX=3702 GN=COL7 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.2e-17
Identity = 60/135 (44.44%), Postives = 70/135 (51.85%), Query Frame = 0


Query: 100 CSSDG--DGDGEMMMKMKKKVSLNLNLNYEEVLEAWSGRGSLWASGSSL-----SNPTYA 159
           C + G  D D E      +K SL L L+Y  V+ AW   GS W +G         N    
Sbjct: 255 CENGGSKDSDREASNDKDRKTSLFLRLDYGAVISAWDNHGSPWKTGIKPECMLGGNTCLP 314

Query: 160 HYMGEVPTM------------------EEERTRRVLRYKEKRHTRLFSKKIRYQVRKLNA 210
           H +G    +                  + ER  RVLRYKEKR TRLFSKKIRY+VRKLNA
Sbjct: 315 HVVGGYEKLMSSDGSVTRQQGRDGGGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNA 374

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BLAST of Tan0021250 vs. ExPASy Swiss-Prot
Match: Q8RWD0 (Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana OX=3702 GN=COL16 PE=1 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 3.0e-15
Identity = 57/131 (43.51%), Postives = 75/131 (57.25%), Query Frame = 0


Query: 105 DGDGEMMMKMKK---KVSLNLNLNYEEVLEAWSGRGSLWASGSSLSN-------PTYA-- 164
           +  GE ++K+K+   K  L L LNY+ V+  W G+G  W+SG            P ++  
Sbjct: 275 ESSGECVVKVKEEEHKNVLMLRLNYDSVISTWGGQGPPWSSGEPPERDMDISGWPAFSMV 334

Query: 165 ----------HYMGE-VPTM---EEERTRRVLRYKEKRHTRLFSKKIRYQVRKLNAEKRP 210
                      Y+G  +P+    +  R  RV RY+EKR TRLFSKKIRY+VRKLNAEKRP
Sbjct: 335 ENGGESTHQKQYVGGCLPSSGFGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRP 394

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BLAST of Tan0021250 vs. ExPASy Swiss-Prot
Match: Q8LG76 (Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=COL6 PE=2 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 7.3e-14
Identity = 54/120 (45.00%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 115 KKKVSLNLNLNYEEVLEAWSGRGSLWASG-------SSLSNPTYAHYMGEVPTMEEE--- 174
           KK+ +L L L+YE V+  W G+G  W +          +  PT  H MGE          
Sbjct: 284 KKEKALMLRLDYESVISTWGGQGIPWTARVPSEIDLDMVCFPT--HTMGESGAEAHHHNH 343

Query: 175 ---------------RTRRVLRYKEKRHTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTVS 210
                          R  RV RY+EKR TRLFSKKIRY+VRKLNAEKRPR+KGRFVK  S
Sbjct: 344 FRGLGLHLGDAGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRSS 401

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BLAST of Tan0021250 vs. ExPASy Swiss-Prot
Match: Q9LU68 (Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana OX=3702 GN=CIA2 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.8e-12
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 116 KKVSLNLNLNYEEVLEAWSGRGSLWASGSSLSNPTYAH-YMGEVPTMEEE--RTRRVLRY 175
           K+    L L+Y+ VLEAWS + S +      S     +  + ++    +   R   VLRY
Sbjct: 331 KRTGPLLKLDYDGVLEAWSDKTSPFPDEIQGSEAVDVNARLAQIDLFGDSGMREASVLRY 390

Query: 176 KEKRHTRLFSKKIRYQVRKLNAEKRPRIKGRFVK 207
           KEKR TRLFSKKIRYQVRKLNA++RPR+KGRFV+
Sbjct: 391 KEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVR 424

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BLAST of Tan0021250 vs. ExPASy Swiss-Prot
Match: Q9M9B3 (Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana OX=3702 GN=COL8 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 8.3e-10
Identity = 55/156 (35.26%), Postives = 83/156 (53.21%), Query Frame = 0


Query: 65  QFHLDHETNHGGDGDGDGDDADQAEMFGCRVVP----KACSSDGDGDGEMMMKMKK---- 124
           QF+ + E +   D   +G++ D+ +  G    P     +C  D D    +  K ++    
Sbjct: 164 QFNFEEEADTMEDLYYNGEEEDKTD--GAEACPGQYLMSCKKDYDNVITVSEKTEEIEDC 223

Query: 125 -KVSLNLNLNYEEVLEAWSGRGSLWASGSSLSNPTYAHYMGEVPTMEEERTR-----RVL 184
            + +    LNYE V+ AW  +     S   + N T + +    P +EE+R R     RV 
Sbjct: 224 YENNARHRLNYENVIAAWDKQ----ESPRDVKNNT-SSFQLVPPGIEEKRVRSEREARVW 283

Query: 185 RYKEKRHTRLFSKKIRYQVRKLNAEKRPRIKGRFVK 207
           RY++KR  RLF KKIRY+VRK+NA+KRPR+KGRFV+
Sbjct: 284 RYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVR 312

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BLAST of Tan0021250 vs. NCBI nr
Match: XP_023520168.1 (zinc finger protein CONSTANS-LIKE 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.1 bits (645), Expect = 2.2e-63
Identity = 156/218 (71.56%), Postives = 168/218 (77.06%), Query Frame = 0


Query: 1   MGYSPLLKSPKK---EEEQEVPNSIWDDFKAFFELSDNEEIKPPLHQFDDCSNNVYGDPV 60
           MGYS LLKSPKK   EEEQEVPNSIWDDFKAFFEL  N E K PL Q ++ S  V G P 
Sbjct: 1   MGYSSLLKSPKKEGAEEEQEVPNSIWDDFKAFFEL--NNEEKLPLQQQENFS-IVNGGP- 60

Query: 61  LHWDLMD-----QFHL-DHETNHGGDGDGDGDDADQAEMFGCRVVPKACSSDGDGDGEMM 120
           L+WDLMD     QF L + +TNHGG GDG      +AE F  RVVPKACS DGDG    +
Sbjct: 61  LNWDLMDHHSNHQFSLSETKTNHGGHGDG-----VEAEAFS-RVVPKACSFDGDG----V 120

Query: 121 MKMKKKVSLNLNLNYEEVLEAWSGRGSLWAS-GSSLSNPTYAHYMGEVPTMEEERTRRVL 180
           M+ KKK SLNLNLNYEEV EAWSGRGSLWA+ GSS SNPT+  YMGEVP MEEERTRRVL
Sbjct: 121 MESKKKASLNLNLNYEEVSEAWSGRGSLWAAGGSSPSNPTHNVYMGEVPRMEEERTRRVL 180

Query: 181 RYKEKRHTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTV 209
           RY+EKR TRLFS KIRYQVRKLNA+KRPRIKGRFVKTV
Sbjct: 181 RYREKRLTRLFSNKIRYQVRKLNAQKRPRIKGRFVKTV 204

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BLAST of Tan0021250 vs. NCBI nr
Match: XP_023520167.1 (zinc finger protein CONSTANS-LIKE 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.9 bits (642), Expect = 4.8e-63
Identity = 154/218 (70.64%), Postives = 170/218 (77.98%), Query Frame = 0


Query: 1   MGYSPLLKSPKK---EEEQEVPNSIWDDFKAFFELSDNEEIKPPLHQFDDCSNNVYGDPV 60
           MGYS LLKSPKK   EEEQEVPNSIWDDFKAFFELS+ E++  PL Q ++ S  V G P 
Sbjct: 1   MGYSSLLKSPKKEGAEEEQEVPNSIWDDFKAFFELSNEEKL--PLQQQENFS-IVNGGP- 60

Query: 61  LHWDLMD-----QFHL-DHETNHGGDGDGDGDDADQAEMFGCRVVPKACSSDGDGDGEMM 120
           L+WDLMD     QF L + +TNH G GDG      +AE+F  RVVPKACS DGDG    +
Sbjct: 61  LNWDLMDHHSNHQFSLSETKTNHSGHGDG-----VEAEVFS-RVVPKACSFDGDG----V 120

Query: 121 MKMKKKVSLNLNLNYEEVLEAWSGRGSLWAS-GSSLSNPTYAHYMGEVPTMEEERTRRVL 180
           M+ KKK SLNLNLNYEEV EAWSGRGSLWA+ GSS SNPT+  YMGEVP MEEERTRRVL
Sbjct: 121 MESKKKASLNLNLNYEEVSEAWSGRGSLWAAGGSSPSNPTHNVYMGEVPRMEEERTRRVL 180

Query: 181 RYKEKRHTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTV 209
           RY+EKR TRLFS KIRYQVRKLNA+KRPRIKGRFVKTV
Sbjct: 181 RYREKRLTRLFSNKIRYQVRKLNAQKRPRIKGRFVKTV 204

[Close]

BLAST of Tan0021250 vs. NCBI nr
Match: XP_022964927.1 (zinc finger protein CONSTANS-LIKE 6 [Cucurbita moschata])

HSP 1 Score: 248.4 bits (633), Expect = 5.3e-62
Identity = 154/218 (70.64%), Postives = 167/218 (76.61%), Query Frame = 0


Query: 1   MGYSPLLKSPKK---EEEQEVPNSIWDDFKAFFELSDNEEIKPPLHQFDDCSNNVYGDPV 60
           MGYS LLKSPKK   EEEQEVPNSIWDDFKAFFELS+ E++  PL Q ++ S  V G P 
Sbjct: 1   MGYSSLLKSPKKEGEEEEQEVPNSIWDDFKAFFELSNEEKL--PLQQQENFS-IVNGGP- 60

Query: 61  LHWDLMD-----QFHL-DHETNHGGDGDGDGDDADQAEMFGCRVVPKACSSDGDGDGEMM 120
           L+WDLMD     QF L + + NHGG G G      +AE F  RVVPKACS DGDG    +
Sbjct: 61  LNWDLMDHHSNHQFSLSETKANHGGHGYG---IEAEAEAFS-RVVPKACSFDGDG----V 120

Query: 121 MKMKKKVSLNLNLNYEEVLEAWSGRGSLWA-SGSSLSNPTYAHYMGEVPTMEEERTRRVL 180
           MK KKK SLNLNLNYEEV EAWSGRGSLWA  GSS SNPT+  YMGEVP MEEERTRRVL
Sbjct: 121 MKSKKKASLNLNLNYEEVSEAWSGRGSLWAGGGSSPSNPTHNVYMGEVPRMEEERTRRVL 180

Query: 181 RYKEKRHTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTV 209
           RY+EKR TRLFS KIRYQVRKLNA+KRPRIKGRFVKTV
Sbjct: 181 RYREKRLTRLFSNKIRYQVRKLNAQKRPRIKGRFVKTV 206

[Close]

BLAST of Tan0021250 vs. NCBI nr
Match: XP_022970623.1 (zinc finger protein CONSTANS-LIKE 6 [Cucurbita maxima])

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-60
Identity = 150/217 (69.12%), Postives = 166/217 (76.50%), Query Frame = 0


Query: 1   MGYSPLLKSPKK--EEEQEVPNSIWDDFKAFFELSDNEEIKPPLHQFDDCSNNVYGDPVL 60
           MGYS LLK  KK  EEEQEVPNSI DDFKAFFELS+ E++  PL Q ++ S  +     L
Sbjct: 1   MGYSSLLKGLKKEEEEEQEVPNSIRDDFKAFFELSNEEKL--PLQQQENFS--IVNGGSL 60

Query: 61  HWDLMD-----QFHL-DHETNHGGDGDGDGDDADQAEMFGCRVVPKACSSDGDGDGEMMM 120
           +WDLMD     QF L + +TNHGG GDG      +AE+F  RVVPKACS DGDG    +M
Sbjct: 61  NWDLMDHHSNHQFSLSETKTNHGGHGDG---VEAEAEVFS-RVVPKACSFDGDG----VM 120

Query: 121 KMKKKVSLNLNLNYEEVLEAWSGRGSLWAS-GSSLSNPTYAHYMGEVPTMEEERTRRVLR 180
           K KKK SLNLNLNYEEV EAWSGRGSLWA+ GSS SNPT+  YMGEVP MEEERTRRVLR
Sbjct: 121 KSKKKASLNLNLNYEEVSEAWSGRGSLWAAGGSSPSNPTHNVYMGEVPRMEEERTRRVLR 180

Query: 181 YKEKRHTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTV 209
           Y+EKR TRLFS KIRYQVRKLNA+KRPRIKGRFVKTV
Sbjct: 181 YREKRLTRLFSNKIRYQVRKLNAQKRPRIKGRFVKTV 205

[Close]

BLAST of Tan0021250 vs. NCBI nr
Match: XP_038893946.1 (zinc finger protein CONSTANS-LIKE 7 isoform X3 [Benincasa hispida])

HSP 1 Score: 188.7 bits (478), Expect = 5.0e-44
Identity = 120/212 (56.60%), Postives = 132/212 (62.26%), Query Frame = 0


Query: 1   MGYSPLLKSPKKEEEQEVPNSIW-DDFKAFFELSDNEE-IKPPLHQFDDCSNNVYGDPVL 60
           MG+S L+KSPKKE+EQ+VPNSIW DDFKAFFEL+D E   +PPL Q           P  
Sbjct: 6   MGFSWLVKSPKKEDEQQVPNSIWEDDFKAFFELTDEENPPRPPLQQ-----------PDY 65

Query: 61  HWDLMDQFHLDHETNHGGDGDGDGDDADQAEMFGCRVVPKACSSDGDGDGEMMMKMKKKV 120
           H      FH                                       DG   M+ K K+
Sbjct: 66  H------FH---------------------------------------DG-AFMENKNKI 125

Query: 121 SLNLNLNYEEVLEAWSGRGSLWASGSS--LSNPTYAHYMGEVPTMEEERTRRVLRYKEKR 180
           SLNLNLNYEEVLEAWS RGSLWA+ +S    + T+  YMGEVP MEEERTRRVLRYKEKR
Sbjct: 126 SLNLNLNYEEVLEAWSDRGSLWAAAASSLTDDATHDPYMGEVPRMEEERTRRVLRYKEKR 160

Query: 181 HTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTV 209
           HTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTV
Sbjct: 186 HTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTV 160

[Close]

BLAST of Tan0021250 vs. ExPASy TrEMBL
Match: A0A6J1HJ00 (zinc finger protein CONSTANS-LIKE 6 OS=Cucurbita moschata OX=3662 GN=LOC111464884 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.6e-62
Identity = 154/218 (70.64%), Postives = 167/218 (76.61%), Query Frame = 0


Query: 1   MGYSPLLKSPKK---EEEQEVPNSIWDDFKAFFELSDNEEIKPPLHQFDDCSNNVYGDPV 60
           MGYS LLKSPKK   EEEQEVPNSIWDDFKAFFELS+ E++  PL Q ++ S  V G P 
Sbjct: 1   MGYSSLLKSPKKEGEEEEQEVPNSIWDDFKAFFELSNEEKL--PLQQQENFS-IVNGGP- 60

Query: 61  LHWDLMD-----QFHL-DHETNHGGDGDGDGDDADQAEMFGCRVVPKACSSDGDGDGEMM 120
           L+WDLMD     QF L + + NHGG G G      +AE F  RVVPKACS DGDG    +
Sbjct: 61  LNWDLMDHHSNHQFSLSETKANHGGHGYG---IEAEAEAFS-RVVPKACSFDGDG----V 120

Query: 121 MKMKKKVSLNLNLNYEEVLEAWSGRGSLWA-SGSSLSNPTYAHYMGEVPTMEEERTRRVL 180
           MK KKK SLNLNLNYEEV EAWSGRGSLWA  GSS SNPT+  YMGEVP MEEERTRRVL
Sbjct: 121 MKSKKKASLNLNLNYEEVSEAWSGRGSLWAGGGSSPSNPTHNVYMGEVPRMEEERTRRVL 180

Query: 181 RYKEKRHTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTV 209
           RY+EKR TRLFS KIRYQVRKLNA+KRPRIKGRFVKTV
Sbjct: 181 RYREKRLTRLFSNKIRYQVRKLNAQKRPRIKGRFVKTV 206

[Close]

BLAST of Tan0021250 vs. ExPASy TrEMBL
Match: A0A6J1I4F9 (zinc finger protein CONSTANS-LIKE 6 OS=Cucurbita maxima OX=3661 GN=LOC111469554 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 6.3e-61
Identity = 150/217 (69.12%), Postives = 166/217 (76.50%), Query Frame = 0


Query: 1   MGYSPLLKSPKK--EEEQEVPNSIWDDFKAFFELSDNEEIKPPLHQFDDCSNNVYGDPVL 60
           MGYS LLK  KK  EEEQEVPNSI DDFKAFFELS+ E++  PL Q ++ S  +     L
Sbjct: 1   MGYSSLLKGLKKEEEEEQEVPNSIRDDFKAFFELSNEEKL--PLQQQENFS--IVNGGSL 60

Query: 61  HWDLMD-----QFHL-DHETNHGGDGDGDGDDADQAEMFGCRVVPKACSSDGDGDGEMMM 120
           +WDLMD     QF L + +TNHGG GDG      +AE+F  RVVPKACS DGDG    +M
Sbjct: 61  NWDLMDHHSNHQFSLSETKTNHGGHGDG---VEAEAEVFS-RVVPKACSFDGDG----VM 120

Query: 121 KMKKKVSLNLNLNYEEVLEAWSGRGSLWAS-GSSLSNPTYAHYMGEVPTMEEERTRRVLR 180
           K KKK SLNLNLNYEEV EAWSGRGSLWA+ GSS SNPT+  YMGEVP MEEERTRRVLR
Sbjct: 121 KSKKKASLNLNLNYEEVSEAWSGRGSLWAAGGSSPSNPTHNVYMGEVPRMEEERTRRVLR 180

Query: 181 YKEKRHTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTV 209
           Y+EKR TRLFS KIRYQVRKLNA+KRPRIKGRFVKTV
Sbjct: 181 YREKRLTRLFSNKIRYQVRKLNAQKRPRIKGRFVKTV 205

[Close]

BLAST of Tan0021250 vs. ExPASy TrEMBL
Match: A0A6J1DMX8 (zinc finger protein CONSTANS-LIKE 6 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022043 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 2.8e-40
Identity = 121/213 (56.81%), Postives = 140/213 (65.73%), Query Frame = 0


Query: 1   MGYSPLLKSPKKEEEQEVPN-SIWDDFKAFFELSDNEEIKPPLHQFDDCSNNVYGDPVLH 60
           MGYS  LKSP KEEEQEVPN ++  DF+AF E    +++ PP  + +D +   YG P   
Sbjct: 1   MGYSWFLKSP-KEEEQEVPNGAVKGDFEAFLE----DKLPPPPPEAED-NFLAYGGPP-D 60

Query: 61  WDL-MDQFHLDHETNHGGDGDGDGDDADQAEMFGCRVVPKACSSDGDGDGEMMMKMKKKV 120
           W L  D  +         +  G  ++A  A  FG        S DGDG      K ++++
Sbjct: 61  WGLNFDYEYFPVPVLSQTNIVGANEEAAAAAAFG------RVSDDGDG----RKKEEEEI 120

Query: 121 SLNLNLNYEEVLEAWSGRGSLWASG--SSLSNPTYAHYMGEVPTMEEERTRRVLRYKEKR 180
           SL LNLNYEEVLEAWSGRGSLWA+   SSLSN T A YMGEVP +EEER RRVLRYKEKR
Sbjct: 121 SLKLNLNYEEVLEAWSGRGSLWAAADDSSLSNLTNAAYMGEVPRIEEERRRRVLRYKEKR 180

Query: 181 HTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTVS 210
           H RLFS KIRYQVRKLNAEKR RIKGRFVKTVS
Sbjct: 181 HNRLFSNKIRYQVRKLNAEKRARIKGRFVKTVS 196

[Close]

BLAST of Tan0021250 vs. ExPASy TrEMBL
Match: A0A6A6L783 (CCT domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_009095 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.4e-36
Identity = 111/234 (47.44%), Postives = 142/234 (60.68%), Query Frame = 0


Query: 3   YSPLLKSPKKEEEQEVPN----------SIWDDFKAFFELSDNEEIKPPLHQFDDCSNNV 62
           +SP LK+PKKEE++   +           + D+F     + D+EE      +F   SNNV
Sbjct: 5   FSP-LKTPKKEEQEAAESIVDDPANGRVDVMDEFDGVLGIEDDEE------KFSK-SNNV 64

Query: 63  YGDPVLHWDLMDQFHLDHETNHGGDGDGDG-----DDADQAEMFG-----CRVVPKACS- 122
           YG  +  W+ MD    +   N  G+ +G       +D      F      CR+  +  + 
Sbjct: 65  YG--LTSWEFMDWEEEEPPNNENGEDEGTDHYSKFEDRSCRRFFEEDSHFCRIKREITAI 124

Query: 123 --SDGDGDGEMMMKMKKKVSLNLNLNYEEVLEAWSGRGSLWASGSSLSN-PTYAHYMGEV 182
              +GD + E       +VSLNLNLNY+EVL+AWS RG LWA+GSSLS+ P  A+YMGEV
Sbjct: 125 GFLNGDDEDEY-----NRVSLNLNLNYQEVLDAWSDRGPLWANGSSLSSIPNNAYYMGEV 184

Query: 183 PTMEEERTRR---VLRYKEKRHTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTVS 210
           P MEEERTRR   VLRYKEKRHTRLFSKKIRY+VRK+NA+KRPR+KGRFVK VS
Sbjct: 185 PVMEEERTRREASVLRYKEKRHTRLFSKKIRYEVRKINADKRPRLKGRFVKRVS 223

[Close]

BLAST of Tan0021250 vs. ExPASy TrEMBL
Match: A0A2K2C4Z8 (CCT domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G281700 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.5e-35
Identity = 111/229 (48.47%), Postives = 136/229 (59.39%), Query Frame = 0


Query: 1   MGYSPLLKSPKKEEEQEVPNSIWDDFKAFFE----------LSDNEEIKPPLHQFDDCSN 60
           M Y+  LKSPKK EEQEVP+++        E          + + E I    H     S+
Sbjct: 1   MKYNSFLKSPKK-EEQEVPDTVVPQLSNIKEESYGNGEIDVVDELEGIFGIEHDEMLSSD 60

Query: 61  NVYGDPVLHWDLMD-QFHLDHETNHG------GDGDGDGDDADQAEMFGCRVVPKACSSD 120
           N+YG   L WD MD + +   E   G      GD      + +++     +V+ +     
Sbjct: 61  NMYGQ--LGWDFMDLEEYPAAEDEEGSEMFKFGDSRSSFFEFEESHYSIGKVIKEESIGF 120

Query: 121 GDGDGEMMMKMKKKVSLNLNLNYEEVLEAWSGRGSLWASGSSLSNPTYAHYMGEVPTMEE 180
           GDGDG+     +K VSLNLNLNY+EVLEAWS RG L A   SLS  +  HYMGEVP MEE
Sbjct: 121 GDGDGD-----EKGVSLNLNLNYQEVLEAWSDRGPLLADDHSLSTASNGHYMGEVPVMEE 180

Query: 181 ERTRR---VLRYKEKRHTRLFSKKIRYQVRKLNAEKRPRIKGRFVKTVS 210
           +RTRR   VLRYKEKR TRLFSKKIRYQVRKLNA+KRPR+KGRFVK V+
Sbjct: 181 DRTRREASVLRYKEKRQTRLFSKKIRYQVRKLNADKRPRLKGRFVKRVT 221

[Close]

BLAST of Tan0021250 vs. TAIR 10
Match: AT1G07050.1 (CCT motif family protein )

HSP 1 Score: 101.7 bits (252), Expect = 7.5e-22
Identity = 81/205 (39.51%), Postives = 107/205 (52.20%), Query Frame = 0


Query: 10  PKKEEEQE---VPNSIWDDFKAFFELSDNEEIKPPLHQFDDCSNNVYGDPVLHWDLMDQF 69
           PKKEEE+E   + +S ++          N  I      FD   +N+     L WD  ++ 
Sbjct: 7   PKKEEEEEEDHLLSSTFESINGHSRDQHNHSIDDFESIFDITIDNLSCSNELTWDFWEE- 66

Query: 70  HLDHETNHGGDGDGDGDDADQAEMFGCRVVPKACSSDGDGDGEMMMKMKKKVSLNLNLNY 129
             D + + G +      D +              SS G  + +      K + L LNLN+
Sbjct: 67  --DEDEDVGEEEKRSSTDQEG-------------SSFGFWENKPTDYEDKDLGLKLNLNH 126

Query: 130 EEVLEAWSG-RGSLWASGSSLSNPTYAHYMGEVPTMEEERTRR----VLRYKEKRHTRLF 189
           +EV++AWS  +  LW   S+L N     Y GEVP +EE+R  R    VLRYKEKR +RLF
Sbjct: 127 QEVIDAWSDHQKPLWTDTSTLDNSV---YRGEVPVIEEKRNMRREASVLRYKEKRQSRLF 186

Query: 190 SKKIRYQVRKLNAEKRPRIKGRFVK 207
           SKKIRYQVRKLNA+KRPR KGRFVK
Sbjct: 187 SKKIRYQVRKLNADKRPRFKGRFVK 192

[Close]

BLAST of Tan0021250 vs. TAIR 10
Match: AT4G25990.1 (CCT motif family protein )

HSP 1 Score: 89.4 bits (220), Expect = 3.8e-18
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 81  DGDDADQAEMFGCRVVPKACSSDGDGDGEMMMKMKKKVSLNLNLNYEEVLEAWSGRGSLW 140
           +GD   + +    +V P A  S      +   K++++VS  L L+Y+ VLEAWSG+ S +
Sbjct: 252 EGDKKKKKKKKKKKVAPAAAESKSSEVTDSNPKLEQRVSPLLKLDYDGVLEAWSGKESPF 311

Query: 141 AS---GSSLSNPTYAHYMGEVPTMEEE--RTRRVLRYKEKRHTRLFSKKIRYQVRKLNAE 200
           +    GS      +   +GE+    E   R   VLRYKEKR  RLFSKKIRYQVRKLNA+
Sbjct: 312 SDEILGSDADGVDFHVRLGEIDLFGESGMREASVLRYKEKRRNRLFSKKIRYQVRKLNAD 371

Query: 201 KRPRIKGRFVK 207
           +RPR+KGRFV+
Sbjct: 372 QRPRMKGRFVR 382

[Close]

BLAST of Tan0021250 vs. TAIR 10
Match: AT1G73870.1 (B-box type zinc finger protein with CCT domain )

HSP 1 Score: 88.6 bits (218), Expect = 6.5e-18
Identity = 60/135 (44.44%), Postives = 70/135 (51.85%), Query Frame = 0


Query: 100 CSSDG--DGDGEMMMKMKKKVSLNLNLNYEEVLEAWSGRGSLWASGSSL-----SNPTYA 159
           C + G  D D E      +K SL L L+Y  V+ AW   GS W +G         N    
Sbjct: 255 CENGGSKDSDREASNDKDRKTSLFLRLDYGAVISAWDNHGSPWKTGIKPECMLGGNTCLP 314

Query: 160 HYMGEVPTM------------------EEERTRRVLRYKEKRHTRLFSKKIRYQVRKLNA 210
           H +G    +                  + ER  RVLRYKEKR TRLFSKKIRY+VRKLNA
Sbjct: 315 HVVGGYEKLMSSDGSVTRQQGRDGGGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNA 374

[Close]

BLAST of Tan0021250 vs. TAIR 10
Match: AT5G14370.1 (CCT motif family protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-17
Identity = 59/130 (45.38%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 97  PKACSSDGDGDGEMMMKMKKKVSLNLNLNYEEVLEAWSGRGSLW-------------ASG 156
           P+ C   G GDG        + SL L L+YE+++EAWS +G+L+             AS 
Sbjct: 214 PRCC---GGGDGN-----DGRPSLALKLDYEQIMEAWSDKGTLYVDGEPPQTVPDLHASA 273

Query: 157 SSLSNPTYAHYMGEVPTMEE-------ERTRRVLRYKEKRHTRLFSKKIRYQVRKLNAEK 207
              ++   A  +  VP ME         R   +LRYKEKR  RLFSK+IRYQVRKLNAEK
Sbjct: 274 DGFNDGGEAGNLWAVPEMETTERLWRGHREASLLRYKEKRQNRLFSKRIRYQVRKLNAEK 333

[Close]

BLAST of Tan0021250 vs. TAIR 10
Match: AT1G25440.1 (B-box type zinc finger protein with CCT domain )

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-16
Identity = 57/131 (43.51%), Postives = 75/131 (57.25%), Query Frame = 0


Query: 105 DGDGEMMMKMKK---KVSLNLNLNYEEVLEAWSGRGSLWASGSSLSN-------PTYA-- 164
           +  GE ++K+K+   K  L L LNY+ V+  W G+G  W+SG            P ++  
Sbjct: 275 ESSGECVVKVKEEEHKNVLMLRLNYDSVISTWGGQGPPWSSGEPPERDMDISGWPAFSMV 334

Query: 165 ----------HYMGE-VPTM---EEERTRRVLRYKEKRHTRLFSKKIRYQVRKLNAEKRP 210
                      Y+G  +P+    +  R  RV RY+EKR TRLFSKKIRY+VRKLNAEKRP
Sbjct: 335 ENGGESTHQKQYVGGCLPSSGFGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRP 394

The following BLAST results are available for this feature:

BLAST of Tan0021250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9A9	9.2e-17	44.44	Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana OX=3702 GN=COL7 PE=2...	[more]
Q8RWD0	3.0e-15	43.51	Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana OX=3702 GN=COL16 PE...	[more]
Q8LG76	7.3e-14	45.00	Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=COL6 PE=2...	[more]
Q9LU68	6.8e-12	48.94	Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana OX=3702 GN=CIA2 P...	[more]
Q9M9B3	8.3e-10	35.26	Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana OX=3702 GN=COL8 PE=1...	[more]

BLAST of Tan0021250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520168.1	2.2e-63	71.56	zinc finger protein CONSTANS-LIKE 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_023520167.1	4.8e-63	70.64	zinc finger protein CONSTANS-LIKE 6 [Cucurbita pepo subsp. pepo]	[more]
XP_022964927.1	5.3e-62	70.64	zinc finger protein CONSTANS-LIKE 6 [Cucurbita moschata]	[more]
XP_022970623.1	1.3e-60	69.12	zinc finger protein CONSTANS-LIKE 6 [Cucurbita maxima]	[more]
XP_038893946.1	5.0e-44	56.60	zinc finger protein CONSTANS-LIKE 7 isoform X3 [Benincasa hispida]	[more]

BLAST of Tan0021250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJ00	2.6e-62	70.64	zinc finger protein CONSTANS-LIKE 6 OS=Cucurbita moschata OX=3662 GN=LOC11146488...	[more]
A0A6J1I4F9	6.3e-61	69.12	zinc finger protein CONSTANS-LIKE 6 OS=Cucurbita maxima OX=3661 GN=LOC111469554 ...	[more]
A0A6J1DMX8	2.8e-40	56.81	zinc finger protein CONSTANS-LIKE 6 isoform X1 OS=Momordica charantia OX=3673 GN...	[more]
A0A6A6L783	2.4e-36	47.44	CCT domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_009095 PE=4...	[more]
A0A2K2C4Z8	3.5e-35	48.47	CCT domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G281700...	[more]

BLAST of Tan0021250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07050.1	7.5e-22	39.51	CCT motif family protein	[more]
AT4G25990.1	3.8e-18	44.27	CCT motif family protein	[more]
AT1G73870.1	6.5e-18	44.44	B-box type zinc finger protein with CCT domain	[more]
AT5G14370.1	1.1e-17	45.38	CCT motif family protein	[more]
AT1G25440.1	2.1e-16	43.51	B-box type zinc finger protein with CCT domain	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 165..207 e-value: 8.1E-18 score: 64.3
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 165..207 score: 15.328533
None	No IPR available	PANTHER	PTHR31874:SF41	CCT MOTIF FAMILY PROTEIN	coord: 4..207
None	No IPR available	PANTHER	PTHR31874	CCT MOTIF FAMILY PROTEIN, EXPRESSED	coord: 4..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021250.1	Tan0021250.1	mRNA
Tan0021250.2	Tan0021250.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding