Tan0021243 (gene) Snake gourd v1

Overview
NameTan0021243
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG07: 31408285 .. 31408614 (-)
RNA-Seq ExpressionTan0021243
SyntenyTan0021243
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATTCAAAAGTTTTTTACGGTGTCCATTGTTATCTTGCTGATATCCGCTTGTTTTGTTTCATCGTGTATGTTCTTATCTCACAACCGTTTATAATTTCATAATATTTTGATGTTTTTGCTACGACAATATTATTAACAATGTTAATCTTTTGGTCACATGGCAGCAAAAGAAGAAATGTTCATTAATTGTGTTCGACCATGTTCTGACACTTATGACGATGATTCATGTTATAATAATTGTGTTCAAGAAAATCAAGGCGCTGGATTTTGTTATCCCAAGCTACTTGACGTTTCTGATGAAAGAGATTGTTGTTGCAGTCCTTGA

mRNA sequence

ATGTCAATTCAAAAGTTTTTTACGGTGTCCATTGTTATCTTGCTGATATCCGCTTGTTTTGTTTCATCGTCAAAAGAAGAAATGTTCATTAATTGTGTTCGACCATGTTCTGACACTTATGACGATGATTCATGTTATAATAATTGTGTTCAAGAAAATCAAGGCGCTGGATTTTGTTATCCCAAGCTACTTGACGTTTCTGATGAAAGAGATTGTTGTTGCAGTCCTTGA

Coding sequence (CDS)

ATGTCAATTCAAAAGTTTTTTACGGTGTCCATTGTTATCTTGCTGATATCCGCTTGTTTTGTTTCATCGTCAAAAGAAGAAATGTTCATTAATTGTGTTCGACCATGTTCTGACACTTATGACGATGATTCATGTTATAATAATTGTGTTCAAGAAAATCAAGGCGCTGGATTTTGTTATCCCAAGCTACTTGACGTTTCTGATGAAAGAGATTGTTGTTGCAGTCCTTGA

Protein sequence

MSIQKFFTVSIVILLISACFVSSSKEEMFINCVRPCSDTYDDDSCYNNCVQENQGAGFCYPKLLDVSDERDCCCSP
Homology
BLAST of Tan0021243 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 7.7e-19
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 0

Query: 1  MSIQKFFTVSIVILLISACFVSSSKEEMF-INCVRPCSDTYDDDSCYNNCVQENQGAGFC 60
          M+ QK  TVSIV+L+I AC VS++K ++  +NCVRPCSDTYDD+SCYN+C++EN GAGFC
Sbjct: 1  MATQKLATVSIVMLMILACIVSTTKGDVLNVNCVRPCSDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLLDVSDERDCCCS 76
          YPKL   S ++DCCC+
Sbjct: 61 YPKL--PSTDKDCCCN 74

BLAST of Tan0021243 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 2.2e-18
Identity = 46/76 (60.53%), Postives = 62/76 (81.58%), Query Frame = 0

Query: 1  MSIQKFFTVSIVILLISACFVSSSKEEMF-INCVRPCSDTYDDDSCYNNCVQENQGAGFC 60
          M+ QK  T+SIV+L+I AC  S++K ++  ++CVRPCSDTYDD+SCYN+C+QEN GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLLDVSDERDCCCS 76
          YPKL   S ++DCCC+
Sbjct: 61 YPKL--PSTDKDCCCN 74

BLAST of Tan0021243 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 40/75 (53.33%), Postives = 60/75 (80.00%), Query Frame = 0

Query: 1  MSIQKFFTVSIVILLISACFVSSSKEEMFINCVRPCSDTYDDDSCYNNCVQENQGAGFCY 60
          M+ +K FTV  +++++   F SS+K +MF+ C+RPC D +DDDSCY++CV+ N+GAGFCY
Sbjct: 1  MASRKLFTVFAIVMMM-FYFASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCY 60

Query: 61 PKLLDVSDERDCCCS 76
          PKL  V++E+DCCC+
Sbjct: 61 PKLPSVTNEKDCCCN 74

BLAST of Tan0021243 vs. NCBI nr
Match: KAE8651701.1 (hypothetical protein Csa_006400, partial [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 6.9e-12
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 0

Query: 30 INCVRPCSDTYDDDSCYNNCVQENQGAGFCYPKLLDVSDERDCCCS 76
          ++CV+PCSDTYDD+SCYN+C++EN GAGFCYPKL   S ++DCCCS
Sbjct: 21 MHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKL--PSTDKDCCCS 64

BLAST of Tan0021243 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 3.2e-09
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0

Query: 1  MSIQKFFTVSIVILLISACFVSSSKEEMFINCVRPCSDTYDDDSCYNNCVQENQGAGFCY 60
          M  QK F VS+++ +  +CF SS + +   NCV PCS+   D  C   C+++++GAGFC 
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLLDVSDERDCCCS 76
          PKL  +SD + CCC+
Sbjct: 61 PKLPGISDMKVCCCN 75

BLAST of Tan0021243 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-18
Identity = 46/76 (60.53%), Postives = 62/76 (81.58%), Query Frame = 0

Query: 1  MSIQKFFTVSIVILLISACFVSSSKEEMF-INCVRPCSDTYDDDSCYNNCVQENQGAGFC 60
          M+ QK  T+SIV+L+I AC  S++K ++  ++CVRPCSDTYDD+SCYN+C+QEN GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLLDVSDERDCCCS 76
          YPKL   S ++DCCC+
Sbjct: 61 YPKL--PSTDKDCCCN 74

BLAST of Tan0021243 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.7e-17
Identity = 44/76 (57.89%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1  MSIQKFFTVSIVILLISACFVSSSKEEMF-INCVRPCSDTYDDDSCYNNCVQENQGAGFC 60
          M+ QK  T+SIV+L+I  C VS++K ++  ++CVRPC DTYDD+SCYN+C++EN GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLLDVSDERDCCCS 76
          YPKL   S ++DCCC+
Sbjct: 61 YPKL--PSTDKDCCCN 74

BLAST of Tan0021243 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 0

Query: 30 INCVRPCSDTYDDDSCYNNCVQENQGAGFCYPKLLDVSDERDCCCS 76
          ++CVRPCSDTYDD+SCYN+C++EN GAGFCYPKL   S ++DCCC+
Sbjct: 10 VHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKL--PSTDKDCCCN 53

BLAST of Tan0021243 vs. ExPASy TrEMBL
Match: A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0

Query: 1  MSIQKFFTVSIVILLISACFVSSSKEEMFINCVRPCSDTYDDDSCYNNCVQENQGAGFCY 60
          M  QK F VS+++ +  +CF SS + +   NCV PCS+   D  C   C+++++GAGFC 
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLLDVSDERDCCCS 76
          PKL  +SD + CCC+
Sbjct: 61 PKLPGISDMKVCCCN 75

BLAST of Tan0021243 vs. ExPASy TrEMBL
Match: A0A5A7TJH1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00010 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 0

Query: 1  MSIQKFFTVSIVILLISACFVSSSKEEMFINCVRPCSDTYDDDSCYNNCVQENQGAGFCY 60
          M  +K   V + I ++ ACFV+ S+ +   NC+RPCS+TY   SCY +C   N+G G C 
Sbjct: 1  MPTRKLLVVFVAITVLLACFVTLSEGQGLWNCIRPCSETYKSLSCYVDCGALNKGTGACI 60

Query: 61 PKLLDVSDERDCCCS 76
          PK   VSDE  CCC+
Sbjct: 61 PK-RPVSDEYVCCCT 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8651697.17.7e-1963.16hypothetical protein Csa_006343 [Cucumis sativus][more]
KGN61228.12.2e-1860.53hypothetical protein Csa_006463 [Cucumis sativus][more]
KAG6586428.11.6e-1653.33hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8651701.16.9e-1269.57hypothetical protein Csa_006400, partial [Cucumis sativus][more]
KGN54497.13.2e-0942.67hypothetical protein Csa_012842 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0LHG91.1e-1860.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LJG52.7e-1757.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0LKF51.5e-1269.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1[more]
A0A0A0L1R81.6e-0942.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1[more]
A0A5A7TJH12.3e-0845.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..19
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0021243.1Tan0021243.1mRNA