Tan0021198 (gene) Snake gourd v1

Overview
NameTan0021198
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG05: 36729012 .. 36729688 (+)
RNA-Seq ExpressionTan0021198
SyntenyTan0021198
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCAACCCCCCCTTTTCCTCTTCGTTCTCCCAGTAGCTCAATTTGAGATGCCGTTTCTAGATACTATCTTTTCTGCTCCATTCTTTTTGTTCTCACAGAATCTTGTAATCTTTTTTCAATAACACACTTAAAAACATTTAGAGACAAACCCCACCACAACAACAACAACATCAACTACAACACCACCACCAACAAAAGTATGAGGCATCTTTGCCTGCTCTCTCTGCTTCTCCTGCCCTTGCTTCTTCCCGCGACCTCTAATTTTCTAGTCCACAGTAGAGCGCTCCGAGTCGATGCTGCGGCCGAGATCGGGCAGCGGGATGGCTCTGATGCCGGTGACTTGAAATTGAAACTGAAGGCTGGTGGTGGTGGCGGCGATGGTTCCGACATGTCGAATAAGAGGGAGTTGTTGGATGAGCGGGTGTTCACGTTGGCGTCCGGACCCAGCAGGAGGGGAGATGGGCACAAGTGAAGTTGGGAAAAGTGTCGACTGGTTGAATTTCTTTTGTTGTTGGCTTCATTTGGTTGGTCTCTTTTAATTATTACTCTGCGGTTTTAATCTGTAAGAAAGAGTTCTCTTTTCACAGATTGTACAAAAATTATTTTCACAGATTATAAGTTACTGTTCTAATGTTGTGTTACTATGTCATCGTGGGTTGAGTTTGTGATTTGCAGC

mRNA sequence

CTCCAACCCCCCCTTTTCCTCTTCGTTCTCCCAGTAGCTCAATTTGAGATGCCGTTTCTAGATACTATCTTTTCTGCTCCATTCTTTTTGTTCTCACAGAATCTTGTAATCTTTTTTCAATAACACACTTAAAAACATTTAGAGACAAACCCCACCACAACAACAACAACATCAACTACAACACCACCACCAACAAAAGTATGAGGCATCTTTGCCTGCTCTCTCTGCTTCTCCTGCCCTTGCTTCTTCCCGCGACCTCTAATTTTCTAGTCCACAGTAGAGCGCTCCGAGTCGATGCTGCGGCCGAGATCGGGCAGCGGGATGGCTCTGATGCCGGTGACTTGAAATTGAAACTGAAGGCTGGTGGTGGTGGCGGCGATGGTTCCGACATGTCGAATAAGAGGGAGTTGTTGGATGAGCGGGTGTTCACGTTGGCGTCCGGACCCAGCAGGAGGGGAGATGGGCACAAGTGAAGTTGGGAAAAGTGTCGACTGGTTGAATTTCTTTTGTTGTTGGCTTCATTTGGTTGGTCTCTTTTAATTATTACTCTGCGGTTTTAATCTGTAAGAAAGAGTTCTCTTTTCACAGATTGTACAAAAATTATTTTCACAGATTATAAGTTACTGTTCTAATGTTGTGTTACTATGTCATCGTGGGTTGAGTTTGTGATTTGCAGC

Coding sequence (CDS)

ATGAGGCATCTTTGCCTGCTCTCTCTGCTTCTCCTGCCCTTGCTTCTTCCCGCGACCTCTAATTTTCTAGTCCACAGTAGAGCGCTCCGAGTCGATGCTGCGGCCGAGATCGGGCAGCGGGATGGCTCTGATGCCGGTGACTTGAAATTGAAACTGAAGGCTGGTGGTGGTGGCGGCGATGGTTCCGACATGTCGAATAAGAGGGAGTTGTTGGATGAGCGGGTGTTCACGTTGGCGTCCGGACCCAGCAGGAGGGGAGATGGGCACAAGTGA

Protein sequence

MRHLCLLSLLLLPLLLPATSNFLVHSRALRVDAAAEIGQRDGSDAGDLKLKLKAGGGGGDGSDMSNKRELLDERVFTLASGPSRRGDGHK
Homology
[Close]
BLAST of Tan0021198 vs. NCBI nr
Match: KGN63303.1 (hypothetical protein Csa_022628 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 5.5e-16
Identity = 63/95 (66.32%), Postives = 66/95 (69.47%), Query Frame = 0 

Query: 1   MRHLCLLSLLLLPLLLP-ATSNFLVHSRALRVDAAAEIGQRDGSDAGDLKLKLKAGGGGG 60
           MRHLCLLSLLLLPLLLP  TSN LVH RAL+ DA  EI    GS A + KLK K   GGG
Sbjct: 50  MRHLCLLSLLLLPLLLPTTTSNLLVHGRALQPDATVEI----GSHAHEFKLKPKDDDGGG 109

Query: 61  D----GSDMSNKRELLDERVFTLASGPSRRGDGHK 91
           D    GSD SN      +RVFTLASGPSRRGDGHK
Sbjct: 110 DSGGGGSDTSN------QRVFTLASGPSRRGDGHK 134

[Close]
BLAST of Tan0021198 vs. NCBI nr
Match: KAG6571236.1 (hypothetical protein SDJN03_30151, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.8 bits (216), Expect = 5.2e-14
Identity = 57/93 (61.29%), Postives = 63/93 (67.74%), Query Frame = 0 

Query: 3  HLCLLSLLLLPLLLPATSNFLVHSRALRVDAAAEIGQRDGSDAGDLKLKLKAGGGGGD-- 62
          HLCLLSLLLLPLLLPATS  L+H RAL+ +          SDA + KLK K GGGGG+  
Sbjct: 5  HLCLLSLLLLPLLLPATSTSLLHRRALQAN----------SDAHEFKLKPKDGGGGGNEG 64

Query: 63 ---GSDMSNKRELLDERVFTLASGPSRRGDGHK 91
             G DMSN      +RVFTLASGPSRRGDGHK
Sbjct: 65 GGGGFDMSN------QRVFTLASGPSRRGDGHK 81

[Close]
BLAST of Tan0021198 vs. ExPASy TrEMBL
Match: A0A0A0LNA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.7e-16
Identity = 63/95 (66.32%), Postives = 66/95 (69.47%), Query Frame = 0 

Query: 1   MRHLCLLSLLLLPLLLP-ATSNFLVHSRALRVDAAAEIGQRDGSDAGDLKLKLKAGGGGG 60
           MRHLCLLSLLLLPLLLP  TSN LVH RAL+ DA  EI    GS A + KLK K   GGG
Sbjct: 50  MRHLCLLSLLLLPLLLPTTTSNLLVHGRALQPDATVEI----GSHAHEFKLKPKDDDGGG 109

Query: 61  D----GSDMSNKRELLDERVFTLASGPSRRGDGHK 91
           D    GSD SN      +RVFTLASGPSRRGDGHK
Sbjct: 110 DSGGGGSDTSN------QRVFTLASGPSRRGDGHK 134

The following BLAST results are available for this feature:
BLAST of Tan0021198 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0021198 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63303.15.5e-1666.32hypothetical protein Csa_022628 [Cucumis sativus][more]
KAG6571236.15.2e-1461.29hypothetical protein SDJN03_30151, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Tan0021198 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNA92.7e-1666.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1[more]
BLAST of Tan0021198 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0021198.1Tan0021198.1mRNA