Tan0021036 (gene) Snake gourd v1

Overview


Name	Tan0021036
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ribonuclease III domain-containing protein RNC1, chloroplastic
Location	LG03: 72516523 .. 72520987 (-)
RNA-Seq Expression	Tan0021036
Synteny	Tan0021036

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCTCCGCACCTTATCCGTTCCTCTTCTACGCCCAACCCCTTCCAAAACCCTGCAACAAAGAGCAAAACATTCAACTTCACAGGGAGGATTTGCCCATCCTCAAAACATCAATGTCCAGTTTCCTGTAACCGAAGTTCTTAATGCTCGGCCCCCGACCTTCCGAATAAACCCATCCTGCATTATCTTCAGTATTCACAATCAATGGAACTTTCTTCTTCTTTTGTTAAACTCTCATCCCCTACTCCTAATTACTCTTTCTCGTCTTCTCTAACCCCATTTTTTGTAAAAATTCACCCCAATAGTCCCAATTGCCGGAACCCCACATCGGGAAATTTGCGTATTTTTGCAGTTGCAATTGACCCACAACAAGAATTGCCCAAAAACAACCCTCAGAGACTGCTTAAAGAGCTCGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAGAAGGTTCCCCCAAGAAGGTTTATTCTTCGACCGCCATTAGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTCAAATCATTCCCATTATTGAGTTCTTGTTTACCATCTTCGCGACTTAACAATGCCGATAAAACTTGGATGGACGAGTACTTGCTGGAAGCCAAGCAAGCCCTTGGATACCCCCTTGAGCCCTCCGATAGTTATGGCGACGACAATCCTGCAAAACAATTTGACACTCTTTTGTACTTGGCATTTCAGCATCCCTCATGCGAAAGAACAAAAGCACGGCACATAAGATCGGGGCATTCGAGGCTTTTGTTTTTAGGCCAATATGTGCTCGAATTGGCGCTAGCAGAGTATTTTCTACAGAGGTATCCTAGGGAATCGCCGGGTCCAATGAGGGAGAGGGTTTTTGCGTTAATTGGGAAGAGGAGCCTTCCAAAGTGGATTAAAGCTGCCAGTTTACAGAATTTGATATTCCCATATGATGATATGGATAAGATGATCAGGAAGGACCGTGAACCACCTGTGAAGTAAGTTTGGTATTGTCTTTTCATTTGTTCTAATTCTTCTTTTTCTCAATACGAAATGATGCTGAGTAAGACATTTGTAAGAAATATCTTTTTTGAGTTTAAGTGATTGGAAAGTGATGCCATTGATGTGTTAAGCCCCATGTTAAATTTGAGAAGAATCACAGAATGTGGGATCATTAGAATGAAGAGGGCCAAATGCTTCTGGGAAGCTGATTATGCAATATGATGATAGTGCCTTGTATGGTTGACTAGGAACTAGGATTTATGGGCTAGAAGAGACATCAAGAAGGGGACATTTGATTATGTTGAATGTCGAAGGCATAATTGCGGCTCTTGAACCATCATAGGTTGACTTAGTGGTCATAAGAGCGTTGAAAAAATAAGAGAGAATGAGTTCAATCTATGGTGGCTAACTACTTGGATTTAATATCTTACGTGTTTCTTGTCAAACCAAACTTAGTAGGATCATGTAGTTGTTTGAGATTAGTCGAGGTGCGCGCAAGCTGGCTTGGACACTCATTGATGTTAAAAAAAATAAAATAATTACTATTCCTGAAAATCCAAAGTTAGGTGAGCTTGGCTGTGATGGTTGTGGACTCCGAGCTTCATTATATAGATGGTCACCCATTTAGTGAAGATGATACTACATATACCAACAAGAGACCATGTTAACTGTTAAGGAAGTTGTTCCAGTGAAACCTGACAATGTGGCCTAAAGCCTTAATTTAAACTTATTTAGGTGGCTTGGTATCACGGGGTCAATTCTTTGTGTGATCCTAGCACTTTGTGTTCTTTCCTCGCACCTAGTACCTGCAGGTTATGGACTCCTTCCATGAATCTGGTTTCCCTTCCAAATTCGTTCGTCCTTCACAAACTTGCCCCCAGGCTATTATGGTTATTTTTTTTACTAGCTCGGTTATCCATTTGATCCCTCTGGGAAAATCTAGCTTTGATGCCACTTGTCACAGTGTCAAATATAGGTTAAAGAATTTGCCCTGTGGCGCTTGGTACCATGGTGAGACATGCCACTTATGTGTTCTTAGTTTGCATGATCCATCAAATTCACGTTCTTTTATGATGGAACATGTACGGTAGGTTAATGTATATATTGCTTCAAAATTCATTTTACCTCTGATTGGCTCATGGGGTGTTTTTCTGATAGGAATGGTTATAAGGGTATATTAATAATTAGTTAGAAAATTGGTTATAAATAGAGGGAGTGTGAAATGAAGAAGTTAGATATTGTTTTAGTGAATTTGATTTAGGGCTTGAGTGATCTCAAGTTAGAAAGAGTCCAAGCACCTCGAACCCTTGGTCTATCTTGTAGTTTTGTTATAACCATACCTATCATGTACCTGGTATAAATTATAATTTGTTTTATTTTTCCCTTCATTTTCTGTAATATATTAATTCATGTTACCAATACCCTGGTAGCAGCGAAGGTTGGAAAGAAAATACTAGAGATAAATTGTGGACGTGCTTTTACATCTAACCATGGTATTACTTTCCCTTGTATTTCTGAGTGAACTATCTTACACTTAATAAATAGATTAGTAGCTTACTCTTGGAAACTAAAACTCGTACTGTTTCTCTTTCTAAAATAGTATGATTCAATCTATTATATATCAAACAATTTGAATCTAAAATTTATTTTCTTCAAACAGGTCTGTATTTTGGGCGTTGTTTGGGGCAATATATTTATGTTTTGGAATGCCAGAAGTGTATCGGGTCCTTTTTGAGGTGTTTGGAATGGATCCAGATGCAGAGGAATGCGAACCGAGGTTACGCAGGCAACTTGAAGATGTAGATTATGTCTCCGTTGAATTCGAGGACAAAAAGATCAGCTGGCAAGATATGGTTGCCTATAAGGCAAGTTTTATGTTTATTCTTAATAGCACAGTGAACTATATCTTATACTACTGTTTTCATCTTTCTTATTGGATGAATTGACTCTGGTAATCATGTTATCATTCTTCTCATTTTTCAGCCTCCAGAAGATGCTCTATTTGCCCACCCTAGACTCTTTAGAGCCTGTGTCCCACCTGGCATGCATCGATTCCGGGGTAATATATGGGATTACGATAGCCGACCTCAAGTCATGCAAGCACTAGGATACCCTGTACCAGTAACAGATAAAATTCCCGACATCACAGAAGCTTAGAAATATTGAACTCGGACTTGGACTGCAGGTAGTTCCCACACACACACACATTACTTTTCTTTCCCTCATTCATAACCACATGATGTTCATAGTATTATTACATTCTCAATTCGAATTTTGTTGTCTTGTACATGTTGTGATTATCAAGGCAATGTTGTGATCTTGATTACATCTTATGTATGGAGGAGTATAATATAAAAAAATGTGTAGTCTAAAATTTCTGCTTGGTGTTTGATATAGATCAATGTAATGGTTTTAAGTAACTTTTATGGCTATATGCAAATTCTGTTAAGCAGCATGATCAAGAAAATCTCAGGCAATTTCTTAATCAAATGCAGCTTTGTTTTTTGCACCCATCAAAATACAAGTTTGAGCACCCTCGTTTCTGCTATGAACGATTAGAATACCTCGGCCAAAAGATCCAGGTAAGACCTTTTACATGTAATCCTGTCTACTTTTCACCATTTATGTTTAATCAAGAAACTTATGGTGGTCGGTGTGATTATGTTCGTTCAAGGATATCGTGATGGCCGAGAGATTGTTGATGAAGCACTTGGATGCTCCTGGAAAGTGGTTGCAGGAGAAGCACCGGAGATTGCTCATGAACAAGTTTTGTGGGCGGTATTTGAGGGAGAAATATCTTCATAAACTTATAACCTATTCCGAAAAAGTTCAAGATGCATACGAGAACAACCGGAGGCTTCGAAACCCAGCCACCACGGCTGTGCAGCAAGCCCTTCATGGACTTTCTTATGCAGTTTATGGAAAGCCTGATGTGAGACGTCTCATGTTTGAGGTTTTTGATTTTGAGCAAATCCAACCTAAAGCTGTTTGAGGATCTACAAGGTAGATGATGCAAGCAATGGGAAAAAAGGGGAATTGTTTCTATCTTCAGGCCCTTCAGCCTTAGATTCTCCCTTTTCTCTAAAAGGAAAATCTTCTTGTTACGCATATTTGAAGTAGATGTACTCCAAAATCTTTGGCAACAAAGAAGCTGATGTGAAATATATGTAATTTGTATGATAATGTTTTTCAAATACTTTTTTCTTGCGATATTCTTTCAAATCCAGTTGCTGTCTCTTCTGATAGTATATTTCTTTTAAAAACTTGTTCATGAATTATTATTATAATGCAAAGAACATCATGAAGAGACAGTGTAATCAAAGATTTGTTGTATTATGGTAGGTGACCGAGCTAGCTTATATGTACTTCAATTAATTACTTAATCCTATCGTAGTTTGTCGTCAAAATTTGTAGAACATTTAATATTGATAGGTGGATAACCTCTGTAGTTTGTCTCTATCTTA

mRNA sequence

CGCCTCCGCACCTTATCCGTTCCTCTTCTACGCCCAACCCCTTCCAAAACCCTGCAACAAAGAGCAAAACATTCAACTTCACAGGGAGGATTTGCCCATCCTCAAAACATCAATGTCCAGTTTCCTGTAACCGAAGTTCTTAATGCTCGGCCCCCGACCTTCCGAATAAACCCATCCTGCATTATCTTCAGTATTCACAATCAATGGAACTTTCTTCTTCTTTTGTTAAACTCTCATCCCCTACTCCTAATTACTCTTTCTCGTCTTCTCTAACCCCATTTTTTGTAAAAATTCACCCCAATAGTCCCAATTGCCGGAACCCCACATCGGGAAATTTGCGTATTTTTGCAGTTGCAATTGACCCACAACAAGAATTGCCCAAAAACAACCCTCAGAGACTGCTTAAAGAGCTCGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAGAAGGTTCCCCCAAGAAGGTTTATTCTTCGACCGCCATTAGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTCAAATCATTCCCATTATTGAGTTCTTGTTTACCATCTTCGCGACTTAACAATGCCGATAAAACTTGGATGGACGAGTACTTGCTGGAAGCCAAGCAAGCCCTTGGATACCCCCTTGAGCCCTCCGATAGTTATGGCGACGACAATCCTGCAAAACAATTTGACACTCTTTTGTACTTGGCATTTCAGCATCCCTCATGCGAAAGAACAAAAGCACGGCACATAAGATCGGGGCATTCGAGGCTTTTGTTTTTAGGCCAATATGTGCTCGAATTGGCGCTAGCAGAGTATTTTCTACAGAGGTATCCTAGGGAATCGCCGGGTCCAATGAGGGAGAGGGTTTTTGCGTTAATTGGGAAGAGGAGCCTTCCAAAGTGGATTAAAGCTGCCAGTTTACAGAATTTGATATTCCCATATGATGATATGGATAAGATGATCAGGAAGGACCGTGAACCACCTGTGAAGTCTGTATTTTGGGCGTTGTTTGGGGCAATATATTTATGTTTTGGAATGCCAGAAGTGTATCGGGTCCTTTTTGAGGTGTTTGGAATGGATCCAGATGCAGAGGAATGCGAACCGAGGTTACGCAGGCAACTTGAAGATGTAGATTATGTCTCCGTTGAATTCGAGGACAAAAAGATCAGCTGGCAAGATATGGTTGCCTATAAGCCTCCAGAAGATGCTCTATTTGCCCACCCTAGACTCTTTAGAGCCTGTGTCCCACCTGGCATGCATCGATTCCGGGGTAATATATGGGATTACGATAGCCGACCTCAAGTCATGCAAGCACTAGGATACCCTGTACCAGTAACAGATAAAATTCCCGACATCACAGAAGCTTAGAAATATTGAACTCGGACTTGGACTGCAGCTTTGTTTTTTGCACCCATCAAAATACAAGTTTGAGCACCCTCGTTTCTGCTATGAACGATTAGAATACCTCGGCCAAAAGATCCAGGATATCGTGATGGCCGAGAGATTGTTGATGAAGCACTTGGATGCTCCTGGAAAGTGGTTGCAGGAGAAGCACCGGAGATTGCTCATGAACAAGTTTTGTGGGCGGTATTTGAGGGAGAAATATCTTCATAAACTTATAACCTATTCCGAAAAAGTTCAAGATGCATACGAGAACAACCGGAGGCTTCGAAACCCAGCCACCACGGCTGTGCAGCAAGCCCTTCATGGACTTTCTTATGCAGTTTATGGAAAGCCTGATGTGAGACGTCTCATGTTTGAGGTTTTTGATTTTGAGCAAATCCAACCTAAAGCTGTTTGAGGATCTACAAGGTAGATGATGCAAGCAATGGGAAAAAAGGGGAATTGTTTCTATCTTCAGGCCCTTCAGCCTTAGATTCTCCCTTTTCTCTAAAAGGAAAATCTTCTTGTTACGCATATTTGAAGTAGATGTACTCCAAAATCTTTGGCAACAAAGAAGCTGATGTGAAATATATGTAATTTGTATGATAATGTTTTTCAAATACTTTTTTCTTGCGATATTCTTTCAAATCCAGTTGCTGTCTCTTCTGATAGTATATTTCTTTTAAAAACTTGTTCATGAATTATTATTATAATGCAAAGAACATCATGAAGAGACAGTGTAATCAAAGATTTGTTGTATTATGGTAGGTGACCGAGCTAGCTTATATGTACTTCAATTAATTACTTAATCCTATCGTAGTTTGTCGTCAAAATTTGTAGAACATTTAATATTGATAGGTGGATAACCTCTGTAGTTTGTCTCTATCTTA

Coding sequence (CDS)

ATGGAACTTTCTTCTTCTTTTGTTAAACTCTCATCCCCTACTCCTAATTACTCTTTCTCGTCTTCTCTAACCCCATTTTTTGTAAAAATTCACCCCAATAGTCCCAATTGCCGGAACCCCACATCGGGAAATTTGCGTATTTTTGCAGTTGCAATTGACCCACAACAAGAATTGCCCAAAAACAACCCTCAGAGACTGCTTAAAGAGCTCGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAGAAGGTTCCCCCAAGAAGGTTTATTCTTCGACCGCCATTAGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTCAAATCATTCCCATTATTGAGTTCTTGTTTACCATCTTCGCGACTTAACAATGCCGATAAAACTTGGATGGACGAGTACTTGCTGGAAGCCAAGCAAGCCCTTGGATACCCCCTTGAGCCCTCCGATAGTTATGGCGACGACAATCCTGCAAAACAATTTGACACTCTTTTGTACTTGGCATTTCAGCATCCCTCATGCGAAAGAACAAAAGCACGGCACATAAGATCGGGGCATTCGAGGCTTTTGTTTTTAGGCCAATATGTGCTCGAATTGGCGCTAGCAGAGTATTTTCTACAGAGGTATCCTAGGGAATCGCCGGGTCCAATGAGGGAGAGGGTTTTTGCGTTAATTGGGAAGAGGAGCCTTCCAAAGTGGATTAAAGCTGCCAGTTTACAGAATTTGATATTCCCATATGATGATATGGATAAGATGATCAGGAAGGACCGTGAACCACCTGTGAAGTCTGTATTTTGGGCGTTGTTTGGGGCAATATATTTATGTTTTGGAATGCCAGAAGTGTATCGGGTCCTTTTTGAGGTGTTTGGAATGGATCCAGATGCAGAGGAATGCGAACCGAGGTTACGCAGGCAACTTGAAGATGTAGATTATGTCTCCGTTGAATTCGAGGACAAAAAGATCAGCTGGCAAGATATGGTTGCCTATAAGCCTCCAGAAGATGCTCTATTTGCCCACCCTAGACTCTTTAGAGCCTGTGTCCCACCTGGCATGCATCGATTCCGGGGTAATATATGGGATTACGATAGCCGACCTCAAGTCATGCAAGCACTAGGATACCCTGTACCAGTAACAGATAAAATTCCCGACATCACAGAAGCTTAG

Protein sequence

MELSSSFVKLSSPTPNYSFSSSLTPFFVKIHPNSPNCRNPTSGNLRIFAVAIDPQQELPKNNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEECEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQVMQALGYPVPVTDKIPDITEA

Homology

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BLAST of Tan0021036 vs. ExPASy Swiss-Prot
Match: Q9SZV0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 627.9 bits (1618), Expect = 7.9e-179
Identity = 306/388 (78.87%), Postives = 339/388 (87.37%), Query Frame = 0


Query: 4   SSSFVKL-SSPTPNYSFSSSLTPFFVKIHPNSPNCRNPTSGNLRIFAVAIDPQQELPKNN 63
           SSS +++ SS  P  SFSSS++ F  K        R     NLRI A      Q LP+++
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSKTQSILTKSR---FQNLRICASVTAETQGLPRDS 68

Query: 64  PQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLP 123
           PQRLLKELA+RK AT PKKKVPP+RFILRPPLDDKKLAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69  PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128

Query: 124 SSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKA 183
           SS+LNNADKTW+DEYLLE KQALGY LEPS+S GDDNPAK FDTLLYLAFQHPSC+R +A
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARA 188

Query: 184 RHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAASL 243
           RH+++GHSRL FLGQYVLELAL E+FLQRYPRESPGPMRERVFALIGKR LPKWIKAASL
Sbjct: 189 RHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASL 248

Query: 244 QNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEECE 303
           QNLIFPYDDMDK+IRK+REPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+EC+
Sbjct: 249 QNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADECQ 308

Query: 304 PRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 363
           PR RRQLEDVDYVSVEFE KK+ WQD+  YKPPEDALFAHPRLFRACVPPGMHRFRGNIW
Sbjct: 309 PRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 368

Query: 364 DYDSRPQVMQALGYPVPVTDKIPDITEA 391
           D+DS+P+VMQ LGYP+ + D+I +ITEA
Sbjct: 369 DFDSKPKVMQTLGYPLTMNDRIKEITEA 393

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BLAST of Tan0021036 vs. ExPASy Swiss-Prot
Match: A6YSL1 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=4577 GN=RNC1 PE=1 SV=1)

HSP 1 Score: 565.5 bits (1456), Expect = 4.8e-160
Identity = 271/379 (71.50%), Postives = 317/379 (83.64%), Query Frame = 0


Query: 22  SLTPFFVKIHPNSPNCRNPTSGNLRIFAVAID------PQQELPKNNPQRLLKELAERKR 81
           +LTP    +H         +S  +R+ AVA D      P  E P N+P RLL+ELA+RK+
Sbjct: 12  TLTPLPFSLH--------SSSRRVRVLAVAADQTPPPAPPSE-PANSPSRLLRELAQRKK 71

Query: 82  ATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMD 141
           A SPKKK PPRRFIL+PPLDD++L  RFL+SPQL+LK+ PLLSSCLPS+ L+ AD+TWMD
Sbjct: 72  AVSPKKKHPPRRFILKPPLDDERLTRRFLSSPQLSLKALPLLSSCLPSAPLSTADRTWMD 131

Query: 142 EYLLEAKQALGYPLEPSDSY--GDDNPAKQFDTLLYLAFQH--PSCERTKARHIRSGHSR 201
           EYLLEAKQALGYPL PS++   GDD PA+ FD L YLAFQH  PS ERT+ RH+R+GHSR
Sbjct: 132 EYLLEAKQALGYPLAPSETLGEGDDCPARHFDVLFYLAFQHLDPSSERTRMRHVRNGHSR 191

Query: 202 LLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAASLQNLIFPYDD 261
           L FLGQYVLELA  E+FLQRYPRESPGPMRERVFALIGK+ LP+W+KAASL NL+FPYDD
Sbjct: 192 LWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKKVLPRWLKAASLHNLVFPYDD 251

Query: 262 MDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEECEPRLRRQLED 321
           +DKMIRKDREPP K+VFWA+FGAIYLCFGMPEVYRVLFE FGMDPD E C+P+LRRQLED
Sbjct: 252 LDKMIRKDREPPSKAVFWAIFGAIYLCFGMPEVYRVLFEAFGMDPDDESCQPKLRRQLED 311

Query: 322 VDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQVM 381
           VDYVSVEFE ++++WQD+ AY+PP DALFAHPRLFRACVPPGMHRFRGNIWD+DSRP+VM
Sbjct: 312 VDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPPGMHRFRGNIWDFDSRPKVM 371

Query: 382 QALGYPVPVTDKIPDITEA 391
             LGYP+P+ D+IP+ITEA
Sbjct: 372 TTLGYPLPMNDRIPEITEA 381

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BLAST of Tan0021036 vs. ExPASy Swiss-Prot
Match: Q8S1Z0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 565.5 bits (1456), Expect = 4.8e-160
Identity = 262/338 (77.51%), Postives = 303/338 (89.64%), Query Frame = 0


Query: 59  PKNNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLS 118
           P N+P RLL+ELAERK+A SPKKK PPRRFIL+PPLDD++L +RFL+SPQL+LK+ PLLS
Sbjct: 52  PANSPSRLLRELAERKKAVSPKKKHPPRRFILKPPLDDERLTQRFLSSPQLSLKALPLLS 111

Query: 119 SCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDN----PAKQFDTLLYLAFQH 178
           SCLPS+ L+ AD+TWMDEYLLEAKQALGYPL PS++ GD +    PA+ FD LLYLAFQH
Sbjct: 112 SCLPSAPLSAADRTWMDEYLLEAKQALGYPLAPSETLGDGDDDGCPARHFDVLLYLAFQH 171

Query: 179 --PSCERTKARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRS 238
              SCERT+ RH+RSGHSRL FLGQYVLELA  E+FLQRYPRESPGPMRERVFALIGKR+
Sbjct: 172 LDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKRA 231

Query: 239 LPKWIKAASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVF 298
           +PKWIKAASL NL+FPYDD+DKMIRKDREPP K+VFWALFGAIYLCFGMPEVYRVLFE F
Sbjct: 232 IPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEVYRVLFEAF 291

Query: 299 GMDPDAEECEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPP 358
           GMDP+ E C+P+LRRQLEDVDYVSVEFE ++++WQD+ AY+PP DALFAHPRLFRACVPP
Sbjct: 292 GMDPEDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPP 351

Query: 359 GMHRFRGNIWDYDSRPQVMQALGYPVPVTDKIPDITEA 391
           GMHRFRGNIWD+D+RP+VM  LGYP+P+ D+IP+ITEA
Sbjct: 352 GMHRFRGNIWDFDNRPKVMNTLGYPLPMNDRIPEITEA 389

[Close]

BLAST of Tan0021036 vs. ExPASy Swiss-Prot
Match: Q5L0Q3 (Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rnc PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.1e-10
Identity = 41/124 (33.06%), Postives = 60/124 (48.39%), Query Frame = 0


Query: 165 DTLLYLAFQHPSCERTKARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERV 224
           + LL  AF H S      R +   + RL FLG  VLEL +++Y  Q++P  S G + +  
Sbjct: 32  EKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLR 91

Query: 225 FALIGKRSLPKWIKAASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEV 284
            A++ + SL K+  A S   L+      +    + R   +  VF A  GA+YL  GM  V
Sbjct: 92  AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMDAV 151

Query: 285 YRVL 289
            R L
Sbjct: 152 IRFL 155

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BLAST of Tan0021036 vs. ExPASy Swiss-Prot
Match: A4IM67 (Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=rnc PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.3e-10
Identity = 42/126 (33.33%), Postives = 60/126 (47.62%), Query Frame = 0


Query: 163 QFDTLLYLAFQHPSCERTKARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRE 222
           Q + LL  AF H S      R     + RL FLG  VLEL +++Y  Q++P  S G + +
Sbjct: 30  QNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTK 89

Query: 223 RVFALIGKRSLPKWIKAASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMP 282
              A++ + SL K+  A S   L+      +    + R   +  VF A  GA+YL  GM 
Sbjct: 90  LRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMD 149

Query: 283 EVYRVL 289
            V R L
Sbjct: 150 VVLRFL 155

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BLAST of Tan0021036 vs. NCBI nr
Match: XP_022133289.1 (ribonuclease III domain-containing protein RNC1, chloroplastic [Momordica charantia])

HSP 1 Score: 779.2 bits (2011), Expect = 1.6e-221
Identity = 377/390 (96.67%), Postives = 386/390 (98.97%), Query Frame = 0


Query: 1   MELSSSFVKLSSPTPNYSFSSSLTPFFVKIHPNSPNCRNPTSGNLRIFAVAIDPQQELPK 60
           MELSSSFV+L+SPTPNYSFSSSLTPF  KI+PN+P+  NPTSGNLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVQLASPTPNYSFSSSLTPFHFKIYPNNPSFPNPTSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKK+VPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKRVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+YGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDNYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240
           KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPVPVTDKIPDITEA 391
           IWDYDSRPQVMQALGYPVPV+DKIPDITEA
Sbjct: 361 IWDYDSRPQVMQALGYPVPVSDKIPDITEA 390

[Close]

BLAST of Tan0021036 vs. NCBI nr
Match: XP_023543359.1 (ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 776.5 bits (2004), Expect = 1.0e-220
Identity = 374/390 (95.90%), Postives = 385/390 (98.72%), Query Frame = 0


Query: 1   MELSSSFVKLSSPTPNYSFSSSLTPFFVKIHPNSPNCRNPTSGNLRIFAVAIDPQQELPK 60
           MELSS FVKLSSPTPN+SFSSSLTPF VKIHPN+P+  NP+SG+LRIFAVA+DPQQELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGSLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKEL ERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240
           KARHIRSGHSRLLFLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKR+LP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKM+RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPVPVTDKIPDITEA 391
           IWDYDSRPQVMQALGYPVPVTDKIP+ITEA
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEA 390

[Close]

BLAST of Tan0021036 vs. NCBI nr
Match: XP_022949934.1 (ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 776.2 bits (2003), Expect = 1.4e-220
Identity = 374/390 (95.90%), Postives = 384/390 (98.46%), Query Frame = 0


Query: 1   MELSSSFVKLSSPTPNYSFSSSLTPFFVKIHPNSPNCRNPTSGNLRIFAVAIDPQQELPK 60
           MELSS FVKLSSPTPN+SFSSSLTPF VKIHPN+P+  NP+SG LRIFAVA+DPQQELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKEL ERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240
           KARHIRSGHSRLLFLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKR+LP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKM+RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPVPVTDKIPDITEA 391
           IWDYDSRPQVMQALGYPVPVTDKIP+ITEA
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEA 390

[Close]

BLAST of Tan0021036 vs. NCBI nr
Match: XP_038883471.1 (ribonuclease III domain-containing protein RNC1, chloroplastic [Benincasa hispida])

HSP 1 Score: 776.2 bits (2003), Expect = 1.4e-220
Identity = 375/390 (96.15%), Postives = 384/390 (98.46%), Query Frame = 0


Query: 1   MELSSSFVKLSSPTPNYSFSSSLTPFFVKIHPNSPNCRNPTSGNLRIFAVAIDPQQELPK 60
           MELSSSFVKLSSP+PNYSFSSSLTPF VKIHPN P   NP+S NLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPP+RFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPKRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240
           KARHIRSGHSRLLFLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKR+LPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDK+ISWQDMV+YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPVPVTDKIPDITEA 391
           IWDYDSRPQVMQALGYP+PVTDKIPDITEA
Sbjct: 361 IWDYDSRPQVMQALGYPLPVTDKIPDITEA 390

[Close]

BLAST of Tan0021036 vs. NCBI nr
Match: XP_008440359.1 (PREDICTED: ribonuclease III domain-containing protein RNC1, chloroplastic [Cucumis melo])

HSP 1 Score: 773.5 bits (1996), Expect = 8.8e-220
Identity = 373/390 (95.64%), Postives = 383/390 (98.21%), Query Frame = 0


Query: 1   MELSSSFVKLSSPTPNYSFSSSLTPFFVKIHPNSPNCRNPTSGNLRIFAVAIDPQQELPK 60
           MELSSSFVKLSSP+PNYSFSSSLTPF VKIHPN P   NP+SGNLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPL+PSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240
           KARHIRSGHSRLLFLGQYV+ELALAEYFL RYPRESPGPMRERVFALIGKR+LPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDK+ISWQDM++YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMISYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPVPVTDKIPDITEA 391
           IWDYDSRPQVMQALGYP+PV DKIPDITEA
Sbjct: 361 IWDYDSRPQVMQALGYPLPVVDKIPDITEA 390

[Close]

BLAST of Tan0021036 vs. ExPASy TrEMBL
Match: A0A6J1BVK6 (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005910 PE=4 SV=1)

HSP 1 Score: 779.2 bits (2011), Expect = 7.8e-222
Identity = 377/390 (96.67%), Postives = 386/390 (98.97%), Query Frame = 0


Query: 1   MELSSSFVKLSSPTPNYSFSSSLTPFFVKIHPNSPNCRNPTSGNLRIFAVAIDPQQELPK 60
           MELSSSFV+L+SPTPNYSFSSSLTPF  KI+PN+P+  NPTSGNLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVQLASPTPNYSFSSSLTPFHFKIYPNNPSFPNPTSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKK+VPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKRVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+YGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDNYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240
           KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPVPVTDKIPDITEA 391
           IWDYDSRPQVMQALGYPVPV+DKIPDITEA
Sbjct: 361 IWDYDSRPQVMQALGYPVPVSDKIPDITEA 390

[Close]

BLAST of Tan0021036 vs. ExPASy TrEMBL
Match: A0A6J1GEC3 (ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453180 PE=4 SV=1)

HSP 1 Score: 776.2 bits (2003), Expect = 6.6e-221
Identity = 374/390 (95.90%), Postives = 384/390 (98.46%), Query Frame = 0


Query: 1   MELSSSFVKLSSPTPNYSFSSSLTPFFVKIHPNSPNCRNPTSGNLRIFAVAIDPQQELPK 60
           MELSS FVKLSSPTPN+SFSSSLTPF VKIHPN+P+  NP+SG LRIFAVA+DPQQELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKEL ERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240
           KARHIRSGHSRLLFLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKR+LP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKM+RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPVPVTDKIPDITEA 391
           IWDYDSRPQVMQALGYPVPVTDKIP+ITEA
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEA 390

[Close]

BLAST of Tan0021036 vs. ExPASy TrEMBL
Match: A0A1S3B1J9 (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484834 PE=4 SV=1)

HSP 1 Score: 773.5 bits (1996), Expect = 4.3e-220
Identity = 373/390 (95.64%), Postives = 383/390 (98.21%), Query Frame = 0


Query: 1   MELSSSFVKLSSPTPNYSFSSSLTPFFVKIHPNSPNCRNPTSGNLRIFAVAIDPQQELPK 60
           MELSSSFVKLSSP+PNYSFSSSLTPF VKIHPN P   NP+SGNLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPL+PSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240
           KARHIRSGHSRLLFLGQYV+ELALAEYFL RYPRESPGPMRERVFALIGKR+LPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDK+ISWQDM++YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRISWQDMISYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPVPVTDKIPDITEA 391
           IWDYDSRPQVMQALGYP+PV DKIPDITEA
Sbjct: 361 IWDYDSRPQVMQALGYPLPVVDKIPDITEA 390

[Close]

BLAST of Tan0021036 vs. ExPASy TrEMBL
Match: A0A6J1IRK8 (ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477828 PE=4 SV=1)

HSP 1 Score: 771.2 bits (1990), Expect = 2.1e-219
Identity = 371/390 (95.13%), Postives = 384/390 (98.46%), Query Frame = 0


Query: 1   MELSSSFVKLSSPTPNYSFSSSLTPFFVKIHPNSPNCRNPTSGNLRIFAVAIDPQQELPK 60
           MELSS FVKLSSPTPN+SFSSSLTPF VKIHPN+P+  NP+SG+LRIFAVA+DP+QELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGSLRIFAVAVDPRQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKEL ERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWM+EYLLEAKQALGYPLEP DSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMEEYLLEAKQALGYPLEPFDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240
           KARHIRSGHSRLLFLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKR+LP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKM+RKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPVPVTDKIPDITEA 391
           IWDYDSRPQVMQALGYPVPVTDKIP+ITEA
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEA 390

[Close]

BLAST of Tan0021036 vs. ExPASy TrEMBL
Match: A0A6J1HF14 (LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111463577 PE=4 SV=1)

HSP 1 Score: 768.1 bits (1982), Expect = 1.8e-218
Identity = 372/390 (95.38%), Postives = 382/390 (97.95%), Query Frame = 0


Query: 1   MELSSSFVKLSSPTPNYSFSSSLTPFFVKIHPNSPNCRNPTSGNLRIFAVAIDPQQELPK 60
           MELSSSFVKLSS T NYSFSSS TPF VKIHPNSPN  NPTSGNLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVKLSSST-NYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRR+ILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNP+KQFDT LYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPSKQFDTXLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240
           KARHIRSGHSRLLFLGQYVLELALAEYFLQRYP+ESPGPMRERVFALIGKR+LPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPKESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDK+IRKDREPPVKSVFWALFGAIYLCFG+PEVYRVLFEVFGMDPD+EE
Sbjct: 241 SLQNLIFPYDDMDKLIRKDREPPVKSVFWALFGAIYLCFGIPEVYRVLFEVFGMDPDSEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKKISWQDM+ YKPPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMITYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPVPVTDKIPDITEA 391
           IWDYDSRPQVM+ALGYPVPVTDKIPDITEA
Sbjct: 361 IWDYDSRPQVMKALGYPVPVTDKIPDITEA 389

[Close]

BLAST of Tan0021036 vs. TAIR 10
Match: AT4G37510.1 (Ribonuclease III family protein )

HSP 1 Score: 627.9 bits (1618), Expect = 5.6e-180
Identity = 306/388 (78.87%), Postives = 339/388 (87.37%), Query Frame = 0


Query: 4   SSSFVKL-SSPTPNYSFSSSLTPFFVKIHPNSPNCRNPTSGNLRIFAVAIDPQQELPKNN 63
           SSS +++ SS  P  SFSSS++ F  K        R     NLRI A      Q LP+++
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSKTQSILTKSR---FQNLRICASVTAETQGLPRDS 68

Query: 64  PQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLP 123
           PQRLLKELA+RK AT PKKKVPP+RFILRPPLDDKKLAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69  PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128

Query: 124 SSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKA 183
           SS+LNNADKTW+DEYLLE KQALGY LEPS+S GDDNPAK FDTLLYLAFQHPSC+R +A
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARA 188

Query: 184 RHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAASL 243
           RH+++GHSRL FLGQYVLELAL E+FLQRYPRESPGPMRERVFALIGKR LPKWIKAASL
Sbjct: 189 RHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASL 248

Query: 244 QNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEECE 303
           QNLIFPYDDMDK+IRK+REPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+EC+
Sbjct: 249 QNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADECQ 308

Query: 304 PRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 363
           PR RRQLEDVDYVSVEFE KK+ WQD+  YKPPEDALFAHPRLFRACVPPGMHRFRGNIW
Sbjct: 309 PRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNIW 368

Query: 364 DYDSRPQVMQALGYPVPVTDKIPDITEA 391
           D+DS+P+VMQ LGYP+ + D+I +ITEA
Sbjct: 369 DFDSKPKVMQTLGYPLTMNDRIKEITEA 393

The following BLAST results are available for this feature:

BLAST of Tan0021036 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZV0	7.9e-179	78.87	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis th...	[more]
A6YSL1	4.8e-160	71.50	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=45...	[more]
Q8S1Z0	4.8e-160	77.51	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa s...	[more]
Q5L0Q3	4.1e-10	33.06	Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rnc PE=3...	[more]
A4IM67	5.3e-10	33.33	Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=r...	[more]

BLAST of Tan0021036 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133289.1	1.6e-221	96.67	ribonuclease III domain-containing protein RNC1, chloroplastic [Momordica charan...	[more]
XP_023543359.1	1.0e-220	95.90	ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita p...	[more]
XP_022949934.1	1.4e-220	95.90	ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita m...	[more]
XP_038883471.1	1.4e-220	96.15	ribonuclease III domain-containing protein RNC1, chloroplastic [Benincasa hispid...	[more]
XP_008440359.1	8.8e-220	95.64	PREDICTED: ribonuclease III domain-containing protein RNC1, chloroplastic [Cucum...	[more]

BLAST of Tan0021036 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BVK6	7.8e-222	96.67	ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica char...	[more]
A0A6J1GEC3	6.6e-221	95.90	ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita...	[more]
A0A1S3B1J9	4.3e-220	95.64	ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo O...	[more]
A0A6J1IRK8	2.1e-219	95.13	ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita...	[more]
A0A6J1HF14	1.8e-218	95.38	LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplas...	[more]

BLAST of Tan0021036 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37510.1	5.6e-180	78.87	Ribonuclease III family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000999	Ribonuclease III domain	SMART	SM00535	riboneu5	coord: 166..303 e-value: 7.3E-27 score: 105.2
IPR000999	Ribonuclease III domain	PFAM	PF14622	Ribonucleas_3_3	coord: 166..287 e-value: 5.1E-9 score: 36.4
IPR000999	Ribonuclease III domain	PROSITE	PS50142	RNASE_3_2	coord: 167..280 score: 15.471435
IPR000999	Ribonuclease III domain	CDD	cd00593	RIBOc	coord: 166..297 e-value: 1.5402E-31 score: 114.632
IPR036389	Ribonuclease III, endonuclease domain superfamily	GENE3D	1.10.1520.10	Ribonuclease III domain	coord: 163..294 e-value: 2.9E-15 score: 58.1
IPR036389	Ribonuclease III, endonuclease domain superfamily	SUPERFAMILY	69065	RNase III domain-like	coord: 132..293
None	No IPR available	PANTHER	PTHR11207:SF21	RIBONUCLEASE III DOMAIN-CONTAINING PROTEIN RNC1, CHLOROPLASTIC	coord: 1..390
IPR011907	Ribonuclease III	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 1..390

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0021036.1	Tan0021036.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0006396	RNA processing
biological_process	GO:0016075	rRNA catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding