Tan0021023 (gene) Snake gourd v1

Overview
NameTan0021023
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionBAG family molecular chaperone regulator 6
LocationLG06: 61214161 .. 61215360 (+)
RNA-Seq ExpressionTan0021023
SyntenyTan0021023
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAGATTTCTGAAGAATCATCATATCTAACAACGAAGAGTAGCTTGAATCGATCTAAAAGCGACAAAAGGAATTTGAATCTCCGTTTTCTGGGTTGGTGGACCGTTTTCGCGCCGAGATCTAAGTCATCTGGATTGGGTTGGAATCGATTGGTCGGATTTTGTTCTTTTCGTTCGGGAAATCGCCGCTTGGGTGAGTTTTCATGTTGTTCTTCTTCTTATTCTCTCTCGTTTTTTAATTTGAATTTGAATTGAATTGTTGTTGTTCATGATTCAGTTTTCGGAATTCTACATTGTTGACGTAAAATTTGCAATATGGAACTTGAATTGCACTTTTGAGATTGAGTACTGTTGCAATTTAAACCCAACCTATATAGTTGATCAAGTGGCAATTAGTAGCTCATAAGTTTTCATGTTTTAGCCTTCTTTTGATTGAATTAGACTTTTCTTTTTTAATATTGGTTCTTTTTAACTGTGTTGGATAATCTTAATTGCTTGGACAACCCAAGCGTAGCTATATCAGAAGGTTAAAGTTCGAATCCTGGCCTCCACACACATTTTTTTTAAACTAAAAAAAAAAAAAAAAGAAGAATTAATTGGCTGGATTAAGGCATTTTGTTACTAAGTTTGAGTGTTTAACTTTGTGGCTAGACTCGAGGATTTTTATATTTGGATTTGGGTATCCAGTGACATAATACTGTGTGTTTTCTTTGTTGAATTTTTTATTATTTATTGGGTGATTCATGAATAATTTTCTAATTGCGTCTTGAGAAGTTATTAATTGCAAGTTTGACCCATTAAATACGCCACAACGTAGTTTCTCCGATTCATAAAGAAAAAAGTTGCAAGTTTGCAACACTCATACAAGTTTAGGATTTAAGTTAGATGAAATCGGAAGCAGGTTAAAATTGACTCACTGACTTAAATTCAGGTTAAAAGTTGAACTTTTTCCTATTCTGTTCTTAAAAACGGTAATAGCAATGTAATGAAAGAGAACTTTCTGCATCGTATAGATGGTGTTTGTTGCTTAATATTTCTGTTGCCTGCGTATTCACAAAGTGTCTTTTACAATGTGATTTGATGATACTCTTAACAGGTATAACAAGAATTCCAAGGATTGTCTGAGGCTGAGCCAAACAGGCTCATCACTTTTCCTTTAAGTCTATCATATCTTTTGGTGGACTTCAGATCAGCTAG

mRNA sequence

ATGGCTCAGATTTCTGAAGAATCATCATATCTAACAACGAAGAGTAGCTTGAATCGATCTAAAAGCGACAAAAGGAATTTGAATCTCCGTTTTCTGGGTTGGTGGACCGTTTTCGCGCCGAGATCTAAGTCATCTGGATTGGGTTGGAATCGATTGGTCGGATTTTGTTCTTTTCGTTCGGGAAATCGCCGCTTGGGTGAGTTTTCATCCAAACAGGCTCATCACTTTTCCTTTAAGTCTATCATATCTTTTGGTGGACTTCAGATCAGCTAG

Coding sequence (CDS)

ATGGCTCAGATTTCTGAAGAATCATCATATCTAACAACGAAGAGTAGCTTGAATCGATCTAAAAGCGACAAAAGGAATTTGAATCTCCGTTTTCTGGGTTGGTGGACCGTTTTCGCGCCGAGATCTAAGTCATCTGGATTGGGTTGGAATCGATTGGTCGGATTTTGTTCTTTTCGTTCGGGAAATCGCCGCTTGGGTGAGTTTTCATCCAAACAGGCTCATCACTTTTCCTTTAAGTCTATCATATCTTTTGGTGGACTTCAGATCAGCTAG

Protein sequence

MAQISEESSYLTTKSSLNRSKSDKRNLNLRFLGWWTVFAPRSKSSGLGWNRLVGFCSFRSGNRRLGEFSSKQAHHFSFKSIISFGGLQIS
Homology
BLAST of Tan0021023 vs. NCBI nr
Match: KAG7025973.1 (BAG family molecular chaperone regulator 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-13
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 1  MAQISEESSYLTTKSSLNRSKSDKRNLNLRFLGWWTVFAPRS-KSSGLGWNRLVGFCSF 59
          MAQI  +SS L + SSL+RSKSDKRNLNLRFLGWWTVFAP S KSSGL  NRLVGFCSF
Sbjct: 1  MAQIFTKSSNLISLSSLDRSKSDKRNLNLRFLGWWTVFAPISIKSSGLCRNRLVGFCSF 59

BLAST of Tan0021023 vs. NCBI nr
Match: KAG6593631.1 (BAG family molecular chaperone regulator 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 8.2e-12
Identity = 45/59 (76.27%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 1  MAQISEESSYLTTKSSLNRSKSDKRNLNLRFLGWWTVFAPRS-KSSGLGWNRLVGFCSF 59
          MAQI  +SS L + SSL+RSK DKRNLNLRFLGWWTV AP S KSSGL  NRLVGFCSF
Sbjct: 1  MAQIFTKSSNLISLSSLDRSKRDKRNLNLRFLGWWTVSAPISIKSSGLCRNRLVGFCSF 59

BLAST of Tan0021023 vs. NCBI nr
Match: KGN45705.2 (hypothetical protein Csa_004938 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 4.1e-11
Identity = 52/99 (52.53%), Postives = 61/99 (61.62%), Query Frame = 0

Query: 1   MAQISEESSYLTTKSSLNRSKSDKRNLNLRFLGWWTVFAPRSKSSGLGWNRLVGF-CSFR 60
           MAQ S+E S L + S  +R  SDK N N  FLGWW VFAP+SKSSGL W RL GF   FR
Sbjct: 4   MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR 63

Query: 61  --SGNRRLGEFS-------SKQAHHFSFKSIISFGGLQI 90
             S N RLG  +       ++QA++ S K I SF GLQI
Sbjct: 64  TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQI 102

BLAST of Tan0021023 vs. NCBI nr
Match: TYK14025.1 (BAG family molecular chaperone regulator 6 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 7.7e-10
Identity = 44/70 (62.86%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 1  MAQISEESSYLTTKSSLNRSKSDKRNLNLRFLGWWTVFAPRSKSSGLGWNRLVGF-CSFR 60
          MAQ SEE S L + S+  R  SDK N NL FLGWWTVFAPRSKSSGL WNRL  F   FR
Sbjct: 1  MAQRSEEQSILVSPSNSERLLSDKANSNLCFLGWWTVFAPRSKSSGLCWNRLAEFYLPFR 60

Query: 61 --SGNRRLGE 68
            S N  LG+
Sbjct: 61 SSSANPSLGD 70

BLAST of Tan0021023 vs. ExPASy TrEMBL
Match: A0A0A0K7J3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006900 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 52/99 (52.53%), Postives = 61/99 (61.62%), Query Frame = 0

Query: 1  MAQISEESSYLTTKSSLNRSKSDKRNLNLRFLGWWTVFAPRSKSSGLGWNRLVGF-CSFR 60
          MAQ S+E S L + S  +R  SDK N N  FLGWW VFAP+SKSSGL W RL GF   FR
Sbjct: 1  MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR 60

Query: 61 --SGNRRLGEFS-------SKQAHHFSFKSIISFGGLQI 90
            S N RLG  +       ++QA++ S K I SF GLQI
Sbjct: 61 TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQI 99

BLAST of Tan0021023 vs. ExPASy TrEMBL
Match: A0A5D3CR26 (BAG family molecular chaperone regulator 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold268G00220 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.7e-10
Identity = 44/70 (62.86%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 1  MAQISEESSYLTTKSSLNRSKSDKRNLNLRFLGWWTVFAPRSKSSGLGWNRLVGF-CSFR 60
          MAQ SEE S L + S+  R  SDK N NL FLGWWTVFAPRSKSSGL WNRL  F   FR
Sbjct: 1  MAQRSEEQSILVSPSNSERLLSDKANSNLCFLGWWTVFAPRSKSSGLCWNRLAEFYLPFR 60

Query: 61 --SGNRRLGE 68
            S N  LG+
Sbjct: 61 SSSANPSLGD 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7025973.12.6e-1379.66BAG family molecular chaperone regulator 6 [Cucurbita argyrosperma subsp. argyro... [more]
KAG6593631.18.2e-1276.27BAG family molecular chaperone regulator 6, partial [Cucurbita argyrosperma subs... [more]
KGN45705.24.1e-1152.53hypothetical protein Csa_004938 [Cucumis sativus][more]
TYK14025.17.7e-1062.86BAG family molecular chaperone regulator 6 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A0A0K7J32.0e-1152.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006900 PE=4 SV=1[more]
A0A5D3CR263.7e-1062.86BAG family molecular chaperone regulator 6 OS=Cucumis melo var. makuwa OX=119469... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0021023.1Tan0021023.1mRNA