Tan0020970 (gene) Snake gourd v1

Overview


Name	Tan0020970
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like
Location	LG05: 74181314 .. 74185781 (-)
RNA-Seq Expression	Tan0020970
Synteny	Tan0020970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCAAACACGATACGATTCGCAACGACGTCGTAAAAGGATGAATGGCTGAGACGCGAGGCGAATTGCCGTTCTGAAAAGATCGCCGGAGTAGGACCCGCGACGAAATGGCATTTTAGCGAAGAGAAAACCCACGCGTCAGCAAATAAGCCACTCAGTCGAAGCTCGATTCCATTTTTCTGTGAACCAGCTGCACCAAATCGTTCTTTATCTCTCAACAGTTCGTCAAGCAGAAAGTGAGAGAGAGAGGCCATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTTCACCCAACCATTTCTTCAATCCGATCAGGCCAGGTATTCAGACTTCTAGGAATTTGTTCCTCTTAATTTATTCGCTGATCAATTTGTCTGTGAATCTTTCGGCTGTGAGTTCCATGTCTTTAATCCAAATTTAGAGGAAAGGATTTTGAGTAATTTTGGTTCTTTGTTGAACATTTACATCATTTCTGGTTTTGTGGACACAGAAGCTGCGAATCATGTGCATGTACAATGATAATTTTCCACTTTGTATGAATTTTATTTTTCTCGAATATGGAAACTAAGTGTTGCATTATGGGGGAAAAACTATAAATCGAACCAAATTGAAGTTTAGTAAAATCTTGTTCGTGTGACATGAGTACACGAGATTCATTTAACTCGACTTCTTTAACTTTTCATGGAGTAGCATTAAGATAGAGGAACAAGATGTATGAATCAGGTTCTGTGGATGAAACAGTACACCCTTCTTCGGCGTGTCCTGGTGGCATGGAGTTATGATGTTTGGTTGGGGATGTCCTCGAAAGTTATACTTCAAGTCTGCAGGCTAAAAATATAATAACCTAAAATCTCTACTGTCTTCTGGAGTGGCCAAAACCTCCATAGAATTAGTGAGGCGGGTCGCAAGCATAATGTAAGGAGTGAAACTACCTGATTATTGAGAAAGAAAGAAACAATGACTAAACATAGTATCTTGTAGATATTTCATGCTAACATTTCAACATTTCTAGCATGGTGAATTAATATCTCAAAATATAGGGATCAACAAGAGACTAGAAAAATGCTCAATGACTAAATAGAACTTTTAGAAGTTGAATGATCAAAATGAATAGAAAAATGTATAGTTTAGCTACTAAAATAGTAGCTTATTCTTTTATTTTTATCCATATTATTGCAGACAGTCTTGAGACGTGTATATAAATTCCAGTATTTACTATTATTGCTGCTTAGCAAATAGTTTTCATTAGAAACAGAGGGTACAATTTTAAAGGTGCGGCAGAGTGGGTCTTAGGTGCGTATTAGTAAAGTTTGTTTGGAATTCTTTGGAAAAGTCAGTTATTTTTCTGTAAGAGGTTGTAGATTATCCATGAATTTTCTTTAAGCTCACATTTCATATGGTTGTTGTTTTTTTATAGTCTATTGATGACCTTGTATCAATTCATTGACAATATATACACTGGATATTATACTAATGCAACCTACATTGCATCTAAGACCTATGAAATTATGATGAATTAAATGCCCGTGTGAGATTGAAATGTTAAGTTTGGTGGTGCTTGGAACAACTGTTATATGAACTTTTCAAAAGAAGGACTAGCTTGTGAAAATAATTGGTGAATCATCCAAAAGGATTTCTCCATACAACAAAGAGTTCATCTTAAGAAGTAAAATTGCAAGGATCTTGAGATCCTCTTTATATACTCTTCAAGAAACCTTAAAATATTTCGTTTAAGTTAATATTAATGGCCTATTTTGAACGTTTATATTCTTGGGTTAATGGGCAATCTTGCATGACAAACTGATGGTGATTGTTAAGGCCAGTTTGGTTTTTGGTTTTTTATTTTTGAAAATTGTGCTTGTTTTTCTCATTATTTCTCTACGACATGTTTCATTTTTCTTAAGGAAATATTAGAATTCTTAGCCAAATTCCAAAAATAAAAACAAGTTTTTGAAAACTATTTTTTTATTTTTCAAAACTTGAATTAGTTTTTGAAAATATATATTAAAAGTAAATAACAATAGGTAATAGTATTTATAGACTTAATTTAAAAAAAAAAAAATCAAATTGCTATCAGATGGGACCCAAGTTTTACCTGGGTCTGTAAAACTGAGATTGGTAGAATTTAAAGCCTAGACTGCATTTAACTCGGAACATTTTGCATGTAATACATAGCCAGAAAATAAACACTTACGAGTATACATCTACTGCATTCAGCTTTGGGTTGCAATTTTCATAATCATCATACCTTTTTTTTTTTTTGCCTGAAAAGGTGTAGAGACCGTTATTTTATTGTTCGTTGGAACTTGCATGACATGTTTATACAGTATTACCCATTTATCATTGCTATTTGTGTCATAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAATGATGCTATCAGTTGCTGAGGTCGGAAAAGGTGGAGGGTTGTTAGAAAAGCCAACCATAGAGAAGACAACACCTGGTCGTGAATCTGAGTTTGATGTCAGGTATAAAACAATTCTCCTCTGAATGTCACGAATAAGAAACTAAAGATCTGTATGAATTAGAGAATTGTTCTCTGTTTCCTATATTAAAAAGAAAAAAAAGAAGAAGATCTGTATGAATTAGAGAGGGTTCAGCCTTCAAAATAATTTTGATCTTCAGGAAATCAAGGAAAACTGCTCCACCTTACCGAGTGTTGCTACATAACGACAATTACAATAAGCGGGAATACGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCACATTACAATGGGATGTCTGTGGTAATTATCTGCGCCCAAGTGGATGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTAAGTTCAATTGAGCCTGCAAGTGATGGTTGTTGAATAGGAAAAATAGACTATGTAATGTACTCTTTTGCCCCCTTAGTTAATAGTTATCAGCCACATTAAAATTGCATGTCCTCAACTGCTACAATATTGCAAGTTGCACCTATGTACATAAATAGAGATACTTCATAAAGAAATAAACTTGAATTTACGAACACAATGTTCACTCTGGTTTCCCTAGTCAGTTTGTTTATGTTATTAGTTATACCCATAAACACGTCTTCCTTTTCAGTAGATCTCTTTTTTACTTGAACTCCATGTGGTTTTTTGTGCACTTATGAATGGCAATGCATACATGTGGTTTTTTCTTTTCAATATATTGTGGGACATTTGGCTTGGGGAGAGTAATAGAATCTTTGGAGAGGACAAGAGATCAGGTGACGAGTTTTGGGAGGCGGCTAAGTTTGACGTCTCTTGTAGGCGTCAAACACTAAGCCTTTTTGCAATTATGAACTTGGTCTTATTCTTTTGCATTGGAGTCATTTTCTGTAGTTAGGGAACTCCTTTTTTGTCCAGGCTTATTTTTTATGTCTTTGTATATTCTTTCATTTTTTTTCCACGAAAGCGCGGTTACTTACCAACAAAATGCATATAGTGGGATCTTACTTTGACTTGGTTGGACGTATCTGAGTGAACATTTGCATTGAGAAGAAGTATAAGAATGGGGGAGATTTTGCAAGCCTCTTTGTTCTCTCTGTTGCTTGTTTGGCATAAAACAAGAAATATTTTTCATATAGATTGAGATGTCAAGAACTGAAACTATTTACACAAAGTTTCCAGTTCCACTTCTTCTAGTTATGGGAGATAGTTCAGACCCTTACTTTTGACTGAATATAAGTGAGGATCAAAAAACAGGGTTAAATGGTTGCATTCTTCACCATTTTCTTGAGACCATAAAATCATATGAATAGATTGAGAAATTTATTTGCAGGACTGAAAGAGATGTAAATGGGGTGCACCAACTCTTGCAGGAGGACTCAACGTGGACTGCTCTTCAATTACTAACTGCAGCAACTGCAACCTGCAAGTAGGTCCAATATCCAACCTATACTGCTATTATTTCTTTCCTTATTTATTATAACATGACATATTAACTTTGAAAAATGTTGAGAAAAATATTGGACCTTTCTATCATATAATAGAAAGTGGGTGAACTAAGGTACCAAATACTTTCCATTGTATTTATCTTTCCTTTTTAAAAGTTTGCTTTCTTAAGTATGGTTGGTGAATATTATTAACTCTCAGCAACTATGTATAAAATTTTATAACTTCTATAATCTTACTAAGTTGTATATGAAGAAAAATTAATCCATTCTCAGGGTAAAGTAAAAAACTTAATAATCAAAAGAAATAAATTTATCCAACCAAACTTTAAGTAAAAAACTTCTATAATCTTAACAGTTGGATATGAATTCAATAATTTGTCTGCCCTTTAATAACCAGTAGATATGTAAAAAAATTGTCAGCTACGTTGTAGAATAATTTATCACAAAGTTGTTCCTTCCAATAATTTTTTTATTTTTGTGTCTCATAACCTAC

mRNA sequence

GTTCAAACACGATACGATTCGCAACGACGTCGTAAAAGGATGAATGGCTGAGACGCGAGGCGAATTGCCGTTCTGAAAAGATCGCCGGAGTAGGACCCGCGACGAAATGGCATTTTAGCGAAGAGAAAACCCACGCGTCAGCAAATAAGCCACTCAGTCGAAGCTCGATTCCATTTTTCTGTGAACCAGCTGCACCAAATCGTTCTTTATCTCTCAACAGTTCGTCAAGCAGAAAGTGAGAGAGAGAGGCCATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTTCACCCAACCATTTCTTCAATCCGATCAGGCCAGAAACCGGAGCATCTTAATGATGCTATCAGTTGCTGAGGTCGGAAAAGGTGGAGGGTTGTTAGAAAAGCCAACCATAGAGAAGACAACACCTGGTCGTGAATCTGAGTTTGATGTCAGGAAATCAAGGAAAACTGCTCCACCTTACCGAGTGTTGCTACATAACGACAATTACAATAAGCGGGAATACGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCACATTACAATGGGATGTCTGTGGTAATTATCTGCGCCCAAGTGGATGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTAAGTTCAATTGAGCCTGCAAGTGATGGTTGTTGAATAGGAAAAATAGACTATGACTGAAAGAGATGTAAATGGGGTGCACCAACTCTTGCAGGAGGACTCAACGTGGACTGCTCTTCAATTACTAACTGCAGCAACTGCAACCTGCAAGTAGGTCCAATATCCAACCTATACTGCTATTATTTCTTTCCTTATTTATTATAACATGACATATTAACTTTGAAAAATGTTGAGAAAAATATTGGACCTTTCTATCATATAATAGAAAGTGGGTGAACTAAGGTACCAAATACTTTCCATTGTATTTATCTTTCCTTTTTAAAAGTTTGCTTTCTTAAGTATGGTTGGTGAATATTATTAACTCTCAGCAACTATGTATAAAATTTTATAACTTCTATAATCTTACTAAGTTGTATATGAAGAAAAATTAATCCATTCTCAGGGTAAAGTAAAAAACTTAATAATCAAAAGAAATAAATTTATCCAACCAAACTTTAAGTAAAAAACTTCTATAATCTTAACAGTTGGATATGAATTCAATAATTTGTCTGCCCTTTAATAACCAGTAGATATGTAAAAAAATTGTCAGCTACGTTGTAGAATAATTTATCACAAAGTTGTTCCTTCCAATAATTTTTTTATTTTTGTGTCTCATAACCTAC

Coding sequence (CDS)

ATGATGCTATCAGTTGCTGAGGTCGGAAAAGGTGGAGGGTTGTTAGAAAAGCCAACCATAGAGAAGACAACACCTGGTCGTGAATCTGAGTTTGATGTCAGGAAATCAAGGAAAACTGCTCCACCTTACCGAGTGTTGCTACATAACGACAATTACAATAAGCGGGAATACGTTGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCACATTACAATGGGATGTCTGTGGTAATTATCTGCGCCCAAGTGGATGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTAAGTTCAATTGAGCCTGCAAGTGATGGTTGTTGA

Protein sequence

MMLSVAEVGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

Homology

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BLAST of Tan0020970 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.2e-62
Identity = 118/160 (73.75%), Postives = 135/160 (84.38%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNHFFNPIRPGDKYYFHK-QCRNRSILMMLSV-AEVGKGGGLLEKPTI 60
           ME AICGR+ L+P+  FN  + GDK+   K  C NRSILM LS  A +GKGGG+L+KP I
Sbjct: 1   METAICGRLALAPSSLFNS-KSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQE 120
           EKTTPGRESEFD+RKS+K APPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 121 AHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           AH NG++VVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

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BLAST of Tan0020970 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-22
Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 50  GGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTL 109
           GG+++ PT   TT  ++    V +S+K  P Y+VLLHNDNYNKREYVV+VL+KV+  +T+
Sbjct: 61  GGVMDAPT---TT--QQPASGVERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITV 120

Query: 110 DNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           D+AV  MQEAH  G+++V+ C Q +AE +C  LR NGL S+IEP   GC
Sbjct: 121 DDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLTSTIEPG--GC 162

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BLAST of Tan0020970 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 75  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVD 134
           RK AP YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGNGLLSSIEP 154
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

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BLAST of Tan0020970 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 75  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVD 134
           RK AP YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGNGL 148
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

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BLAST of Tan0020970 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-13
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 54  EKPTIEKTTPGRESEFD--VRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDN 113
           E PT    +PG  +  D    + RK +P Y+VLLHND  N  EYV+  L +V+P ++  +
Sbjct: 4   ETPT---RSPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQD 63

Query: 114 AVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEP 154
           A+ +M EAH  G+ +VI+C    AE +C  L+  GL SSIEP
Sbjct: 64  AMAVMLEAHNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

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BLAST of Tan0020970 vs. NCBI nr
Match: XP_022136971.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 321.2 bits (822), Expect = 4.9e-84
Identity = 154/158 (97.47%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNHFFNPIRPGDKYYFHKQCRNRSILMMLSVAEVGKGGGLLEKPTIEK 60
           MEAAICGRVPLSPNHFFN  RPGDKYYFHKQCRNRS LMMLSVAE+GKGGGLLEKPTIEK
Sbjct: 1   MEAAICGRVPLSPNHFFNQTRPGDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

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BLAST of Tan0020970 vs. NCBI nr
Match: XP_038894047.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida] >XP_038894048.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 312.0 bits (798), Expect = 2.9e-81
Identity = 148/158 (93.67%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNHFFNPIRPGDKYYFHKQCRNRSILMMLSVAEVGKGGGLLEKPTIEK 60
           MEAAICGRV LSPNHFF+  +PGDKYYFHKQCRNRS+LMMLSVAE+GKGGGLLEKPTIEK
Sbjct: 1   MEAAICGRVSLSPNHFFSSTKPGDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRK RKT+PPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKLRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

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BLAST of Tan0020970 vs. NCBI nr
Match: XP_008456997.1 (PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 310.1 bits (793), Expect = 1.1e-80
Identity = 147/158 (93.04%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNHFFNPIRPGDKYYFHKQCRNRSILMMLSVAEVGKGGGLLEKPTIEK 60
           MEAAICGRVPLSPN FF   +PGDKYYFHKQCRNRS LMM+SVAE+GKGGGLLEKPTIEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

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BLAST of Tan0020970 vs. NCBI nr
Match: XP_004137466.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus] >KGN64109.1 hypothetical protein Csa_014084 [Cucumis sativus])

HSP 1 Score: 308.1 bits (788), Expect = 4.3e-80
Identity = 146/158 (92.41%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNHFFNPIRPGDKYYFHKQCRNRSILMMLSVAEVGKGGGLLEKPTIEK 60
           MEAAICGRVPLSPN FF   +PGDKYYFHKQCRNRS LMM+SVAE+GKGGGLLEKP IEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

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BLAST of Tan0020970 vs. NCBI nr
Match: XP_022994956.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 306.2 bits (783), Expect = 1.6e-79
Identity = 146/158 (92.41%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNHFFNPIRPGDKYYFHKQCRNRSILMMLSVAEVGKGGGLLEKPTIEK 60
           MEAAICGR+PLSP HFFN  RPGDKYYFHKQCRNRSIL MLSVAE+GKGGGLLEKPT EK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK APPYRVLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

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BLAST of Tan0020970 vs. ExPASy TrEMBL
Match: A0A6J1C511 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.4e-84
Identity = 154/158 (97.47%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNHFFNPIRPGDKYYFHKQCRNRSILMMLSVAEVGKGGGLLEKPTIEK 60
           MEAAICGRVPLSPNHFFN  RPGDKYYFHKQCRNRS LMMLSVAE+GKGGGLLEKPTIEK
Sbjct: 1   MEAAICGRVPLSPNHFFNQTRPGDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

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BLAST of Tan0020970 vs. ExPASy TrEMBL
Match: A0A1S3C561 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103496767 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 5.4e-81
Identity = 147/158 (93.04%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNHFFNPIRPGDKYYFHKQCRNRSILMMLSVAEVGKGGGLLEKPTIEK 60
           MEAAICGRVPLSPN FF   +PGDKYYFHKQCRNRS LMM+SVAE+GKGGGLLEKPTIEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Tan0020970 vs. ExPASy TrEMBL
Match: A0A0A0LSY6 (ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.1e-80
Identity = 146/158 (92.41%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNHFFNPIRPGDKYYFHKQCRNRSILMMLSVAEVGKGGGLLEKPTIEK 60
           MEAAICGRVPLSPN FF   +PGDKYYFHKQCRNRS LMM+SVAE+GKGGGLLEKP IEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Tan0020970 vs. ExPASy TrEMBL
Match: A0A6J1K0P0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111490541 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 7.8e-80
Identity = 146/158 (92.41%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNHFFNPIRPGDKYYFHKQCRNRSILMMLSVAEVGKGGGLLEKPTIEK 60
           MEAAICGR+PLSP HFFN  RPGDKYYFHKQCRNRSIL MLSVAE+GKGGGLLEKPT EK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK APPYRVLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Tan0020970 vs. ExPASy TrEMBL
Match: A0A6J1GS56 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457001 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.0e-79
Identity = 145/158 (91.77%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNHFFNPIRPGDKYYFHKQCRNRSILMMLSVAEVGKGGGLLEKPTIEK 60
           MEAAICGR+PLSP HFFN  RPGDKYYFHKQCRNRSIL MLSVAE+GKGGGLLEKP  EK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK APPYRVLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Tan0020970 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 238.8 bits (608), Expect = 3.0e-63
Identity = 118/160 (73.75%), Postives = 135/160 (84.38%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNHFFNPIRPGDKYYFHK-QCRNRSILMMLSV-AEVGKGGGLLEKPTI 60
           ME AICGR+ L+P+  FN  + GDK+   K  C NRSILM LS  A +GKGGG+L+KP I
Sbjct: 1   METAICGRLALAPSSLFNS-KSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQE 120
           EKTTPGRESEFD+RKS+K APPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 121 AHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           AH NG++VVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of Tan0020970 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 170.6 bits (431), Expect = 9.9e-43
Identity = 93/160 (58.13%), Postives = 106/160 (66.25%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNHFFNPIRPGDKYYFHK-QCRNRSILMMLSV-AEVGKGGGLLEKPTI 60
           ME AICGR+ L+P+  FN  + GDK+   K  C NRSILM LS  A +GKGGG+L+KP I
Sbjct: 1   METAICGRLALAPSSLFNS-KSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQE 120
           EKTTPGRESEFD+RKS+K APPYRV+LHNDN+NKREYVVQVLMK                
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMK---------------- 120

Query: 121 AHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
                          DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 121 --------------ADAEQHCMQLRGNGLLSSVEPDGGGC 129

The following BLAST results are available for this feature:

BLAST of Tan0020970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	4.2e-62	73.75	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	2.5e-22	52.29	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	2.8e-18	58.23	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	1.3e-15	56.16	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	2.1e-13	42.16	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of Tan0020970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136971.1	4.9e-84	97.47	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
XP_038894047.1	2.9e-81	93.67	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa ...	[more]
XP_008456997.1	1.1e-80	93.04	PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like ...	[more]
XP_004137466.1	4.3e-80	92.41	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus...	[more]
XP_022994956.1	1.6e-79	92.41	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]

BLAST of Tan0020970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C511	2.4e-84	97.47	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A1S3C561	5.4e-81	93.04	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis ...	[more]
A0A0A0LSY6	2.1e-80	92.41	ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 S...	[more]
A0A6J1K0P0	7.8e-80	92.41	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1GS56	3.0e-79	91.77	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita mos...	[more]

BLAST of Tan0020970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	3.0e-63	73.75	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	9.9e-43	58.13	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 39..106 e-value: 1.1E-18 score: 66.8
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 18..117 e-value: 2.7E-21 score: 77.1
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 37..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR33473:SF14	ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS	coord: 3..120
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 3..120
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	HAMAP	MF_00302	ClpS	coord: 23..117 score: 14.923259

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020970.2	Tan0020970.2	mRNA
Tan0020970.1	Tan0020970.1	mRNA
Tan0020970.3	Tan0020970.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1903052	positive regulation of proteolysis involved in cellular protein catabolic process
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0030674	protein-macromolecule adaptor activity