Tan0020961 (gene) Snake gourd v1

Overview


Name	Tan0020961
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein LATERAL ROOT PRIMORDIUM 1
Location	LG09: 58024611 .. 58027241 (-)
RNA-Seq Expression	Tan0020961
Synteny	Tan0020961

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCATTTCTCAACTCTCAATTCAAAATCGCTTTTTTTTTCTCTCTCTCTAAATTACAAACTTTTTAACAACATTCATATATTTCTTCTTAGAATTCATGTTTCTGTCAGTTTCTAAGTACCTAAGATCCAATTAGATCTCTTCAAATTTTAATTTTAATTTCAGAGAGATTTTATTTACAATTAGGGTTTTTTTTTGTCTCGCCGGAGATTCATTAGCTGTGGCTGCCGCACGCCGTCTTCCTTCCGATTCCGGTGCCTTCGCCGACTGGGTGGCTCCTCCCTCTGCCGCCGATGAACTTTCTCTCGGTTTCAATTCCGGTGCCGCCGTTGCCAGGATGTGGCCCTCCTCCTCCTCCTCCTCCAGACCCATCGCCGGTGGGTATGGCCCCACGGCAGCGCCGCCGACGGACATGGTGGGTCTCATGGCCTCTGGCTTCGGCGTCGGCGTCGGCGTTAGCGTTTTGCCTCTCCTTACTGGGCTTGCGCCGTCGAGTGTTGGAATTGAAGAAGCTAATTTGATGATCAGCCGCGGCGGCGATGGCGGCGGCGGTGGAGGTGGTGGGATTCAATTTCATGGGAATAATTTTGATGGGTTTGGGTTTTTGGGAGGTGGGTCGAGTTTGAATTCCGGCGCCGGAACTTGCCATGACTGTGGGAACCAAGCGAAGAAAGACTGCAGCCATCGCCGGTGCCGGAGCTGCTGTAAAAGCCGAGGTTTTGATTGTGCTACTCACGTGAAGAGCACGTGGGTTCCTGCAGCCAGGAGGAGAGAAAGGCAGTTGCTGAGCGCTGCCGCAGACGCCGCCGCGACCGCCGGCGGGACATCATCGGGGTCCACCTCCGGCGGGAAAAAGCCGAGGCTAATTGCATCACAGACAACTACCAATTCTCACACTTCCACTTCCAATACTCCAACACGAAGCTTCGACACTTCTTCAGGTGAAATCAAATGTCCATAACTTTTTTTTTTTTTTTTGGTTTAATTTTCATTTTCGTCCCTACACTTTCTAGATTTTCTAAATTGTTTCATTTGAATCTCGAGATTTTCAAAATATTCATTTTAATTCTTAAATTCAAACGGTTAAAATGTCTTATTTAAGCGTTGAACTTAAAAAACACAGTGCTAAATCACTTTTAAACACATGTTACAAAATATTCAATAATTTATTTATACTATTTAAATCATCTCATATGTGAGCTTCAACAAGTGACTATATATATATATATATATAAATTGTTTGAGTAAAAGATTGAACCATCCACTTTGAGTTGGTAACATTACTCAATGAATTATGTTCGAATTGTCAAGTGACTATCCATATTAATTTGCTAGAAAAAATAGTATCGTAAGAATTCAAACATATAACTTTGTAGTTTTGATATCAAGAGACATATATATATATATTTTTTTAATAAATACATAAATATGTATTAAAGTCATACAAATGAGTTAAAACCAACATTATTGAGTGAATTATATAAATTAGTTAAAACAAACATTATTGAGTGAAGTTATTAAAGGGACAAAATTATGGAAGGAAATGAATTTGTTTTTTATAATAATTAAAAAATTAAAATAAATAGAGTTAAAATATAATTTTAATCCCAATACTTTTAAATGTCGAATTTTAATCCATGTATTTTTAATAAAATTTAAATTTAGTCTCTATTATTAGTTTATTATCATTATTTCTTAAAAAATAATAGTCTCTATATCTATTAACTAATTTTCCTCTATAAATTTTAGAGTCGTGTTTAAATGCTGCATTTTCTTATATTAAAATTATTATTATTATTTAACTAGATAAAAAATAACTTCAAATTTATTATAGAGAGTACTTAAATTAAATCTGAACTACAACAAAACAAAATTTAAAGTAGGGACCAAAATGAAATTTTTATTAGATTATACGAGATTCCATCTTAAAACCAATTGGTTAAGAGAGGAGTAGCTTATATATTATATTGTGAGGTTTCCCTCCACTTTTTCAAGGTGGGATATTCAACAAAACTCATAAATATTTTGAAAAATACAAATACAATATTTATGAAAAGTCGAGATTAAAATAAAACGAGCAAAGGAAAAAGATTTAAACCTCTTTCCTGCAAACCATTCATTATTTTTTCCGAAGAACAAAAGATAAAACTTTATTTTGGTGTTGTTTTTGCGTTAACTTTAAACAACAATGCAGCTGCCGATATGAGTTGTAAAAAGGCAAAGAAGCTGCCGGAGCAAGTACGAGCGCCGGCGGTGTTCAAGTGCGTCCAGGTGACGGCGGTGGAGGGCAGTGGCGGCGGCGGTGGCGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATGTCTTCAAAGGTTATTTATACGACCATGGAGTGGAAGCTAGAGATGGATTTCCCTCGGATTTGCATCTTGGAGGAGGCGGAGATGGCGGTTCGACATCGTCGCCGATCATCCATCCTACTGATGTTTATGGAAGCTCCGCCAGCCGCGGCGGAGGACTGGCTGGAGGTTCCGGCTATGGTAATCCAATAAATTGAGTTGTTTTTGATCCATATTTAAACATGTTCAATGTTTGGTTATAGCATTTGAATTTGTTTAGTGGAAAAATAAGAGATAGAAG

mRNA sequence

CTCTCATTTCTCAACTCTCAATTCAAAATCGCTTTTTTTTTCTCTCTCTCTAAATTACAAACTTTTTAACAACATTCATATATTTCTTCTTAGAATTCATGTTTCTGTCAGTTTCTAAGTACCTAAGATCCAATTAGATCTCTTCAAATTTTAATTTTAATTTCAGAGAGATTTTATTTACAATTAGGGTTTTTTTTTGTCTCGCCGGAGATTCATTAGCTGTGGCTGCCGCACGCCGTCTTCCTTCCGATTCCGGTGCCTTCGCCGACTGGGTGGCTCCTCCCTCTGCCGCCGATGAACTTTCTCTCGGTTTCAATTCCGGTGCCGCCGTTGCCAGGATGTGGCCCTCCTCCTCCTCCTCCTCCAGACCCATCGCCGGTGGGTATGGCCCCACGGCAGCGCCGCCGACGGACATGGTGGGTCTCATGGCCTCTGGCTTCGGCGTCGGCGTCGGCGTTAGCGTTTTGCCTCTCCTTACTGGGCTTGCGCCGTCGAGTGTTGGAATTGAAGAAGCTAATTTGATGATCAGCCGCGGCGGCGATGGCGGCGGCGGTGGAGGTGGTGGGATTCAATTTCATGGGAATAATTTTGATGGGTTTGGGTTTTTGGGAGGTGGGTCGAGTTTGAATTCCGGCGCCGGAACTTGCCATGACTGTGGGAACCAAGCGAAGAAAGACTGCAGCCATCGCCGGTGCCGGAGCTGCTGTAAAAGCCGAGGTTTTGATTGTGCTACTCACGTGAAGAGCACGTGGGTTCCTGCAGCCAGGAGGAGAGAAAGGCAGTTGCTGAGCGCTGCCGCAGACGCCGCCGCGACCGCCGGCGGGACATCATCGGGGTCCACCTCCGGCGGGAAAAAGCCGAGGCTAATTGCATCACAGACAACTACCAATTCTCACACTTCCACTTCCAATACTCCAACACGAAGCTTCGACACTTCTTCAGCTGCCGATATGAGTTGTAAAAAGGCAAAGAAGCTGCCGGAGCAAGTACGAGCGCCGGCGGTGTTCAAGTGCGTCCAGGTGACGGCGGTGGAGGGCAGTGGCGGCGGCGGTGGCGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATGTCTTCAAAGGTTATTTATACGACCATGGAGTGGAAGCTAGAGATGGATTTCCCTCGGATTTGCATCTTGGAGGAGGCGGAGATGGCGGTTCGACATCGTCGCCGATCATCCATCCTACTGATGTTTATGGAAGCTCCGCCAGCCGCGGCGGAGGACTGGCTGGAGGTTCCGGCTATGGTAATCCAATAAATTGAGTTGTTTTTGATCCATATTTAAACATGTTCAATGTTTGGTTATAGCATTTGAATTTGTTTAGTGGAAAAATAAGAGATAGAAG

Coding sequence (CDS)

ATGTGGCCCTCCTCCTCCTCCTCCTCCAGACCCATCGCCGGTGGGTATGGCCCCACGGCAGCGCCGCCGACGGACATGGTGGGTCTCATGGCCTCTGGCTTCGGCGTCGGCGTCGGCGTTAGCGTTTTGCCTCTCCTTACTGGGCTTGCGCCGTCGAGTGTTGGAATTGAAGAAGCTAATTTGATGATCAGCCGCGGCGGCGATGGCGGCGGCGGTGGAGGTGGTGGGATTCAATTTCATGGGAATAATTTTGATGGGTTTGGGTTTTTGGGAGGTGGGTCGAGTTTGAATTCCGGCGCCGGAACTTGCCATGACTGTGGGAACCAAGCGAAGAAAGACTGCAGCCATCGCCGGTGCCGGAGCTGCTGTAAAAGCCGAGGTTTTGATTGTGCTACTCACGTGAAGAGCACGTGGGTTCCTGCAGCCAGGAGGAGAGAAAGGCAGTTGCTGAGCGCTGCCGCAGACGCCGCCGCGACCGCCGGCGGGACATCATCGGGGTCCACCTCCGGCGGGAAAAAGCCGAGGCTAATTGCATCACAGACAACTACCAATTCTCACACTTCCACTTCCAATACTCCAACACGAAGCTTCGACACTTCTTCAGCTGCCGATATGAGTTGTAAAAAGGCAAAGAAGCTGCCGGAGCAAGTACGAGCGCCGGCGGTGTTCAAGTGCGTCCAGGTGACGGCGGTGGAGGGCAGTGGCGGCGGCGGTGGCGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATGTCTTCAAAGGTTATTTATACGACCATGGAGTGGAAGCTAGAGATGGATTTCCCTCGGATTTGCATCTTGGAGGAGGCGGAGATGGCGGTTCGACATCGTCGCCGATCATCCATCCTACTGATGTTTATGGAAGCTCCGCCAGCCGCGGCGGAGGACTGGCTGGAGGTTCCGGCTATGGTAATCCAATAAATTGA

Protein sequence

MWPSSSSSSRPIAGGYGPTAAPPTDMVGLMASGFGVGVGVSVLPLLTGLAPSSVGIEEANLMISRGGDGGGGGGGGIQFHGNNFDGFGFLGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQLLSAAADAAATAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPSDLHLGGGGDGGSTSSPIIHPTDVYGSSASRGGGLAGGSGYGNPIN

Homology

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BLAST of Tan0020961 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.2e-52
Identity = 143/287 (49.83%), Postives = 176/287 (61.32%), Query Frame = 0


Query: 38  VGVSVLPLLTGLAPSSVGIEEANLMISRGGDGGGGGGGG-----IQFHGNNFDGFGFLGG 97
           +GV V+PLLT   P    +E++++                    + F   N    G    
Sbjct: 40  LGVGVIPLLTAGTPQQ-NVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSN 99

Query: 98  GSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQL 157
            S   SGA    TC DCGNQAKK+C  RRCR+CCKSRGFDC+THVKSTWV AARRRERQ+
Sbjct: 100 NSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQV 159

Query: 158 LSAAADAAATAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTSSAADM 217
           +   A+  A   G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+TSS+   
Sbjct: 160 MPTGANPTA---GSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQD 219

Query: 218 SCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGGGGNEYAYQAVVKIGGHVFKGYLYDHGV 277
                +  P QVRA AVFKCV+VTAVE      G +EYAYQAVVKIGGHVFKG+LYD G+
Sbjct: 220 GGGSREAWPGQVRAAAVFKCVRVTAVE-----DGDDEYAYQAVVKIGGHVFKGFLYDQGL 279

Query: 278 EARDGFP--SDLHLGGGG---DGGSTSSPIIHPTD-VYGSSASRGGG 307
           E ++GFP  SDLHLGG     +G S S+PI+ P + VYG     GGG
Sbjct: 280 EPKEGFPSMSDLHLGGSANNHNGVSASAPILDPPNVVYGGGGGSGGG 317

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BLAST of Tan0020961 vs. ExPASy Swiss-Prot
Match: O65517 (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-29
Identity = 89/217 (41.01%), Postives = 117/217 (53.92%), Query Frame = 0


Query: 102 TCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQLLSAAADAAATAG 161
           +C DCGNQAKKDC+H RCR+CCKSRGFDC+THV+STW+P ARRRERQ     + +    G
Sbjct: 93  SCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGG 152

Query: 162 GTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKLPEQVRAPA 221
             S G+  GG          T    +S+S  P+ S      A +   +A   P +V + A
Sbjct: 153 SGSGGAGGGGSSIPKRHRDPTLPGTSSSSRLPSHS------AGLEMGEA-SFPGEVSSDA 212

Query: 222 VFKCVQVTAVEGSGGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPSDLHLGGGG 281
           +F+CV+++ V+     GG  +YAYQ  V IGGH+FKG LYD G       P   ++ GG 
Sbjct: 213 LFRCVKMSGVD----DGGDGQYAYQTTVNIGGHLFKGILYDQG-------PESSYMSGGS 272

Query: 282 DGGSTSSPIIHPTDVYGSSASRGGGLAGGSGYGNPIN 319
            G          +D   SSA  GGG       G+P N
Sbjct: 273 GG----------SDHQSSSAGGGGG-------GHPFN 274

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BLAST of Tan0020961 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-27
Identity = 89/228 (39.04%), Postives = 118/228 (51.75%), Query Frame = 0


Query: 94  SSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQLLSAA 153
           S   SG  +C DCGNQ+KKDCSH RCR+CCKSRG DC THVKSTWVPAA+RRERQ   + 
Sbjct: 111 SGSGSGGPSCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLST 170

Query: 154 ADAAATAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKL 213
                  GG+        ++   I +++T+ ++T   +  T   +  +            
Sbjct: 171 GQQPQQLGGSVP-----KRQRERIPARSTSMAYTRIPSNNTSGLEVGN-----------F 230

Query: 214 PEQVRAPAVFKCVQVTAVEGSGGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARD---G 273
           P +V + AVF+CV+V++V+         EYAY+  V IGGHVFKG LYD G   R    G
Sbjct: 231 PPEVSSSAVFRCVRVSSVDDE-----EEEYAYKTAVSIGGHVFKGVLYDQGPAERSSSGG 290

Query: 274 FPSDLHLGGGGDGGSTSSPIIHPTDVYGSSASRGGGLAGGSGYGNPIN 319
               L+L   G   S+SSP +   +    S S          Y  PIN
Sbjct: 291 GSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASLNYPTPIN 317

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BLAST of Tan0020961 vs. ExPASy Swiss-Prot
Match: K4B6C9 (Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-27
Identity = 89/225 (39.56%), Postives = 123/225 (54.67%), Query Frame = 0


Query: 96  LNSGAG--TCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQLLSAA 155
           + SG G  +C DCGNQAKKDC H RCR+CCKSRGF C THVKSTWVPAA+RRERQ   AA
Sbjct: 120 MRSGGGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAA 179

Query: 156 ADAAATAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKL 215
                  G  ++ +    K+ R   S ++  S    SNT             +  +  K 
Sbjct: 180 LQ-QQQQGHNNNNNNHKNKRQREDPSASSLVSTRLPSNT-------------NGLEVGKF 239

Query: 216 PEQVRAPAVFKCVQVTAVEGSGGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPS 275
           P +VR  AVF+C+Q++++E        ++ AYQA V IGGHVFKG LYD G E++  + +
Sbjct: 240 PSKVRTSAVFQCIQMSSIEDD-----EDQLAYQAAVSIGGHVFKGILYDQGHESQ--YNN 299

Query: 276 DLHLGGGGDGGSTSSPI---IHPTDVYGSSASRGGGLAGGSGYGN 316
            +  GG    G ++  +    H +    ++ +  GG A  +G  N
Sbjct: 300 MVAAGGDTSSGGSAGGVQHHHHNSAAVATATTTSGGDATAAGPSN 323

[Close]

BLAST of Tan0020961 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.1e-27
Identity = 80/186 (43.01%), Postives = 107/186 (57.53%), Query Frame = 0


Query: 91  GGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQLL 150
           GG +    G   C DCGNQAKKDC H RCR+CCKSRGF C THVKSTWVPAA+RRER   
Sbjct: 113 GGFTVTRQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRER--- 172

Query: 151 SAAADAAATAGGTSSGSTSGGKKPRLIASQTTTNSH-------TSTSNTPTRSFDTSSAA 210
             A  A+      SS  T   K+ R  +     +         ++ +NT   + +++S  
Sbjct: 173 -LAQLASLQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGL 232

Query: 211 DMSCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGGGGNEYAYQAVVKIGGHVFKGYLYDH 270
           ++S    + LP +V +PA+F+CV+V+++E          YAYQ  V IGGH+FKG LYD 
Sbjct: 233 EVS----QHLPPEVNSPAIFRCVRVSSIEED---EDDQAYAYQTAVNIGGHIFKGILYDQ 287

[Close]

BLAST of Tan0020961 vs. NCBI nr
Match: KAG6588219.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 529.6 bits (1363), Expect = 1.8e-146
Identity = 289/322 (89.75%), Postives = 299/322 (92.86%), Query Frame = 0


Query: 1   MWPSSSSSSRPIAGGYGPTAAPPTDMVGLMASGFGVGVGVSVLPLLTGLAPSSVGIEEAN 60
           MWP SSSS+RPIAG YG TA PPTDMVGLMASG+  GVG+SVLPLLTGLAPSSVGIEE N
Sbjct: 54  MWP-SSSSTRPIAGAYGHTAPPPTDMVGLMASGY--GVGLSVLPLLTGLAPSSVGIEETN 113

Query: 61  LMISRGGDG--GGGGGGGIQFHGNNFDGFGFLGGGSSLNSGAGTCHDCGNQAKKDCSHRR 120
           LMISRGG G  GGGGGGG+QFHGNNFDGFGFLGGGSSLNSG GTCHDCGNQAKKDC+HRR
Sbjct: 114 LMISRGGGGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRR 173

Query: 121 CRSCCKSRGFDCATHVKSTWVPAARRRERQLLSAAADAAATAGGTSSGSTSGGKKPRLIA 180
           CRSCCKSRGFDCATHVKSTWVPAARRRERQ+LSAAA AAA  GGTSSGSTSGGKKPRLIA
Sbjct: 174 CRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIA 233

Query: 181 SQTTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGG 240
           SQTTTNSHTSTSNTPTRSFDT SAADMS K+AKKLPEQVRAPAVFKCV+VTAVE  GGG 
Sbjct: 234 SQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVE--GGGS 293

Query: 241 GGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP--SDLHLGGGGDGGSTSSPIIHPTDV 300
           GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFP  SDLHLGGGGDGGSTSSPII P+DV
Sbjct: 294 GGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDV 353

Query: 301 YGSSASRGGGLAGGSGYGNPIN 319
           YGSSA RGGGLAGGSGYGNPIN
Sbjct: 354 YGSSAGRGGGLAGGSGYGNPIN 370

[Close]

BLAST of Tan0020961 vs. NCBI nr
Match: XP_022974160.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 528.1 bits (1359), Expect = 5.3e-146
Identity = 290/321 (90.34%), Postives = 300/321 (93.46%), Query Frame = 0


Query: 1   MWPSSSSSSRPIAGGYGPTAAPPTDMVGLMASGFGVGVGVSVLPLLTGLAPSSVGIEEAN 60
           MWP SSSSSRPIAG YG TA PPTDMVGLMASG+  GVG+SVLPLLTG+APSSVGIEE N
Sbjct: 1   MWP-SSSSSRPIAGAYGHTAPPPTDMVGLMASGY--GVGLSVLPLLTGIAPSSVGIEETN 60

Query: 61  LMISRGGDG-GGGGGGGIQFHGNNFDGFGFLGGGSSLNSGAGTCHDCGNQAKKDCSHRRC 120
           LMISRGG G GGGGGGG+QFHGNNFDGFGFLGGGSSLNSG GTCHDCGNQAKKDC+HRRC
Sbjct: 61  LMISRGGGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRC 120

Query: 121 RSCCKSRGFDCATHVKSTWVPAARRRERQLLSAAADAAATAGGTSSGSTSGGKKPRLIAS 180
           RSCCKSRGFDCATHVKSTWVPAARRRERQ+LSAAA AAAT GGTSSGSTSGGKKPRLIAS
Sbjct: 121 RSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAT-GGTSSGSTSGGKKPRLIAS 180

Query: 181 QTTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGGG 240
           QTTTNSHTSTSNTPTRSFDT SAADMS K+AKKLPEQVRAPAVFKCV+VTAVE  GGG G
Sbjct: 181 QTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVE--GGGSG 240

Query: 241 GNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP--SDLHLGGGGDGGSTSSPIIHPTDVY 300
           GNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFP  SDLHLGGGGDGGSTSSPII P+DVY
Sbjct: 241 GNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVY 300

Query: 301 GSSASRGGGLAGGSGYGNPIN 319
           GSSA RGGGLAGGSGYGNPIN
Sbjct: 301 GSSAGRGGGLAGGSGYGNPIN 315

[Close]

BLAST of Tan0020961 vs. NCBI nr
Match: XP_023531847.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 526.9 bits (1356), Expect = 1.2e-145
Identity = 290/321 (90.34%), Postives = 300/321 (93.46%), Query Frame = 0


Query: 1   MWPSSSSSSRPIAGGYGPTAAPPTDMVGLMASGFGVGVGVSVLPLLTGLAPSSVGIEEAN 60
           MWP SSSSSRPIAG YG TA PPTDMVGLMASG+  GVG+SVLPLLTGLAPSSVGIEE N
Sbjct: 1   MWP-SSSSSRPIAGAYGHTAPPPTDMVGLMASGY--GVGLSVLPLLTGLAPSSVGIEETN 60

Query: 61  LMISRGGDG-GGGGGGGIQFHGNNFDGFGFLGGGSSLNSGAGTCHDCGNQAKKDCSHRRC 120
           LMISRGG G GGGGGGG+QFHGNNFDGFGFLGGGSSLNSG GTCHDCGNQAKKDC+HRRC
Sbjct: 61  LMISRGGGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRC 120

Query: 121 RSCCKSRGFDCATHVKSTWVPAARRRERQLLSAAADAAATAGGTSSGSTSGGKKPRLIAS 180
           RSCCKSRGFDCATHVKSTWVPAARRRERQ+LSAAA AAAT GGTSSGSTSGGKKPRLIAS
Sbjct: 121 RSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAT-GGTSSGSTSGGKKPRLIAS 180

Query: 181 QTTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGGG 240
           QTTTNSHTSTSNTPTRSFDT SAADMS K+AKKLPEQVRAPAVFKCV+VTAVE  GGG G
Sbjct: 181 QTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVE--GGGSG 240

Query: 241 GNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP--SDLHLGGGGDGGSTSSPIIHPTDVY 300
           GNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFP  SDLHLGGGGDGGSTSSPII P+DVY
Sbjct: 241 GNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVY 300

Query: 301 GSSASRGGGLAGGSGYGNPIN 319
           GSSA RGGGLAGGSGYGNPI+
Sbjct: 301 GSSAGRGGGLAGGSGYGNPIS 315

[Close]

BLAST of Tan0020961 vs. NCBI nr
Match: XP_022933450.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 524.6 bits (1350), Expect = 5.8e-145
Identity = 288/320 (90.00%), Postives = 299/320 (93.44%), Query Frame = 0


Query: 1   MWPSSSSSSRPIAGGYGPTAAPPTDMVGLMASGFGVGVGVSVLPLLTGLAPSSVGIEEAN 60
           MWP S+SS+RPIAG YG TA PPTDMVGLMASG+  GVG+SVLPLLTGLAPSSVGIEE N
Sbjct: 1   MWP-STSSTRPIAGAYGHTAPPPTDMVGLMASGY--GVGLSVLPLLTGLAPSSVGIEETN 60

Query: 61  LMISRGGDGGGGGGGGIQFHGNNFDGFGFLGGGSSLNSGAGTCHDCGNQAKKDCSHRRCR 120
           LMISRGGD GGGGGGG+QFHGNNFDGFGFLGGGSSLNSG GTCHDCGNQAKKDC+HRRCR
Sbjct: 61  LMISRGGD-GGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCR 120

Query: 121 SCCKSRGFDCATHVKSTWVPAARRRERQLLSAAADAAATAGGTSSGSTSGGKKPRLIASQ 180
           SCCKSRGFDCATHVKSTWVPAARRRERQ+LSAAA AAAT GGTSSGSTSGGKKPRLIASQ
Sbjct: 121 SCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAT-GGTSSGSTSGGKKPRLIASQ 180

Query: 181 TTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGGGG 240
           TTTNSHTSTSNTPTRSFDT SAADMS K+AKKLPEQVRAPAVFKCV+VTAVE  GGG GG
Sbjct: 181 TTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVE--GGGTGG 240

Query: 241 NEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP--SDLHLGGGGDGGSTSSPIIHPTDVYG 300
           NEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFP  SDLHLGGGGDGGSTSSPII P+DVYG
Sbjct: 241 NEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYG 300

Query: 301 SSASRGGGLAGGSGYGNPIN 319
           SSA RGGGLAG SGYGNPIN
Sbjct: 301 SSAGRGGGLAGSSGYGNPIN 313

[Close]

BLAST of Tan0020961 vs. NCBI nr
Match: XP_022974168.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 520.4 bits (1339), Expect = 1.1e-143
Identity = 288/321 (89.72%), Postives = 298/321 (92.83%), Query Frame = 0


Query: 1   MWPSSSSSSRPIAGGYGPTAAPPTDMVGLMASGFGVGVGVSVLPLLTGLAPSSVGIEEAN 60
           MWP SSSSSRPIAG YG TA PPTDMVGLMASG+  GVG+SVLPLLTG+APSSVGIEE N
Sbjct: 1   MWP-SSSSSRPIAGAYGHTAPPPTDMVGLMASGY--GVGLSVLPLLTGIAPSSVGIEETN 60

Query: 61  LMISRGGDG-GGGGGGGIQFHGNNFDGFGFLGGGSSLNSGAGTCHDCGNQAKKDCSHRRC 120
           LMISRGG G GGGGGGG+QFHGNNFDGFGFLGGGSSLNSG GTCHDCGNQAKKDC+HRRC
Sbjct: 61  LMISRGGGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRC 120

Query: 121 RSCCKSRGFDCATHVKSTWVPAARRRERQLLSAAADAAATAGGTSSGSTSGGKKPRLIAS 180
           RSCCKSRGFDCATHVKSTWVPAARRRERQ+LSAAA AAAT GGTSSGSTSGGKKPRLIAS
Sbjct: 121 RSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAT-GGTSSGSTSGGKKPRLIAS 180

Query: 181 QTTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGGG 240
           QTTTNSHTSTSNTPTRSFDT S  DMS K+AKKLPEQVRAPAVFKCV+VTAVE  GGG G
Sbjct: 181 QTTTNSHTSTSNTPTRSFDTCS--DMSYKRAKKLPEQVRAPAVFKCVRVTAVE--GGGSG 240

Query: 241 GNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP--SDLHLGGGGDGGSTSSPIIHPTDVY 300
           GNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFP  SDLHLGGGGDGGSTSSPII P+DVY
Sbjct: 241 GNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVY 300

Query: 301 GSSASRGGGLAGGSGYGNPIN 319
           GSSA RGGGLAGGSGYGNPIN
Sbjct: 301 GSSAGRGGGLAGGSGYGNPIN 313

[Close]

BLAST of Tan0020961 vs. ExPASy TrEMBL
Match: A0A6J1ID91 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472747 PE=3 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 2.6e-146
Identity = 290/321 (90.34%), Postives = 300/321 (93.46%), Query Frame = 0


Query: 1   MWPSSSSSSRPIAGGYGPTAAPPTDMVGLMASGFGVGVGVSVLPLLTGLAPSSVGIEEAN 60
           MWP SSSSSRPIAG YG TA PPTDMVGLMASG+  GVG+SVLPLLTG+APSSVGIEE N
Sbjct: 1   MWP-SSSSSRPIAGAYGHTAPPPTDMVGLMASGY--GVGLSVLPLLTGIAPSSVGIEETN 60

Query: 61  LMISRGGDG-GGGGGGGIQFHGNNFDGFGFLGGGSSLNSGAGTCHDCGNQAKKDCSHRRC 120
           LMISRGG G GGGGGGG+QFHGNNFDGFGFLGGGSSLNSG GTCHDCGNQAKKDC+HRRC
Sbjct: 61  LMISRGGGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRC 120

Query: 121 RSCCKSRGFDCATHVKSTWVPAARRRERQLLSAAADAAATAGGTSSGSTSGGKKPRLIAS 180
           RSCCKSRGFDCATHVKSTWVPAARRRERQ+LSAAA AAAT GGTSSGSTSGGKKPRLIAS
Sbjct: 121 RSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAT-GGTSSGSTSGGKKPRLIAS 180

Query: 181 QTTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGGG 240
           QTTTNSHTSTSNTPTRSFDT SAADMS K+AKKLPEQVRAPAVFKCV+VTAVE  GGG G
Sbjct: 181 QTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVE--GGGSG 240

Query: 241 GNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP--SDLHLGGGGDGGSTSSPIIHPTDVY 300
           GNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFP  SDLHLGGGGDGGSTSSPII P+DVY
Sbjct: 241 GNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVY 300

Query: 301 GSSASRGGGLAGGSGYGNPIN 319
           GSSA RGGGLAGGSGYGNPIN
Sbjct: 301 GSSAGRGGGLAGGSGYGNPIN 315

[Close]

BLAST of Tan0020961 vs. ExPASy TrEMBL
Match: A0A6J1F4X3 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111440862 PE=3 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 2.8e-145
Identity = 288/320 (90.00%), Postives = 299/320 (93.44%), Query Frame = 0


Query: 1   MWPSSSSSSRPIAGGYGPTAAPPTDMVGLMASGFGVGVGVSVLPLLTGLAPSSVGIEEAN 60
           MWP S+SS+RPIAG YG TA PPTDMVGLMASG+  GVG+SVLPLLTGLAPSSVGIEE N
Sbjct: 1   MWP-STSSTRPIAGAYGHTAPPPTDMVGLMASGY--GVGLSVLPLLTGLAPSSVGIEETN 60

Query: 61  LMISRGGDGGGGGGGGIQFHGNNFDGFGFLGGGSSLNSGAGTCHDCGNQAKKDCSHRRCR 120
           LMISRGGD GGGGGGG+QFHGNNFDGFGFLGGGSSLNSG GTCHDCGNQAKKDC+HRRCR
Sbjct: 61  LMISRGGD-GGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCR 120

Query: 121 SCCKSRGFDCATHVKSTWVPAARRRERQLLSAAADAAATAGGTSSGSTSGGKKPRLIASQ 180
           SCCKSRGFDCATHVKSTWVPAARRRERQ+LSAAA AAAT GGTSSGSTSGGKKPRLIASQ
Sbjct: 121 SCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAT-GGTSSGSTSGGKKPRLIASQ 180

Query: 181 TTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGGGG 240
           TTTNSHTSTSNTPTRSFDT SAADMS K+AKKLPEQVRAPAVFKCV+VTAVE  GGG GG
Sbjct: 181 TTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVE--GGGTGG 240

Query: 241 NEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP--SDLHLGGGGDGGSTSSPIIHPTDVYG 300
           NEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFP  SDLHLGGGGDGGSTSSPII P+DVYG
Sbjct: 241 NEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYG 300

Query: 301 SSASRGGGLAGGSGYGNPIN 319
           SSA RGGGLAG SGYGNPIN
Sbjct: 301 SSAGRGGGLAGSSGYGNPIN 313

[Close]

BLAST of Tan0020961 vs. ExPASy TrEMBL
Match: A0A6J1IFF1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472747 PE=3 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 5.3e-144
Identity = 288/321 (89.72%), Postives = 298/321 (92.83%), Query Frame = 0


Query: 1   MWPSSSSSSRPIAGGYGPTAAPPTDMVGLMASGFGVGVGVSVLPLLTGLAPSSVGIEEAN 60
           MWP SSSSSRPIAG YG TA PPTDMVGLMASG+  GVG+SVLPLLTG+APSSVGIEE N
Sbjct: 1   MWP-SSSSSRPIAGAYGHTAPPPTDMVGLMASGY--GVGLSVLPLLTGIAPSSVGIEETN 60

Query: 61  LMISRGGDG-GGGGGGGIQFHGNNFDGFGFLGGGSSLNSGAGTCHDCGNQAKKDCSHRRC 120
           LMISRGG G GGGGGGG+QFHGNNFDGFGFLGGGSSLNSG GTCHDCGNQAKKDC+HRRC
Sbjct: 61  LMISRGGGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRC 120

Query: 121 RSCCKSRGFDCATHVKSTWVPAARRRERQLLSAAADAAATAGGTSSGSTSGGKKPRLIAS 180
           RSCCKSRGFDCATHVKSTWVPAARRRERQ+LSAAA AAAT GGTSSGSTSGGKKPRLIAS
Sbjct: 121 RSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAT-GGTSSGSTSGGKKPRLIAS 180

Query: 181 QTTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGGG 240
           QTTTNSHTSTSNTPTRSFDT S  DMS K+AKKLPEQVRAPAVFKCV+VTAVE  GGG G
Sbjct: 181 QTTTNSHTSTSNTPTRSFDTCS--DMSYKRAKKLPEQVRAPAVFKCVRVTAVE--GGGSG 240

Query: 241 GNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP--SDLHLGGGGDGGSTSSPIIHPTDVY 300
           GNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFP  SDLHLGGGGDGGSTSSPII P+DVY
Sbjct: 241 GNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVY 300

Query: 301 GSSASRGGGLAGGSGYGNPIN 319
           GSSA RGGGLAGGSGYGNPIN
Sbjct: 301 GSSAGRGGGLAGGSGYGNPIN 313

[Close]

BLAST of Tan0020961 vs. ExPASy TrEMBL
Match: A0A6J1EZ30 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111440862 PE=3 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 5.9e-143
Identity = 286/320 (89.38%), Postives = 297/320 (92.81%), Query Frame = 0


Query: 1   MWPSSSSSSRPIAGGYGPTAAPPTDMVGLMASGFGVGVGVSVLPLLTGLAPSSVGIEEAN 60
           MWP S+SS+RPIAG YG TA PPTDMVGLMASG+  GVG+SVLPLLTGLAPSSVGIEE N
Sbjct: 1   MWP-STSSTRPIAGAYGHTAPPPTDMVGLMASGY--GVGLSVLPLLTGLAPSSVGIEETN 60

Query: 61  LMISRGGDGGGGGGGGIQFHGNNFDGFGFLGGGSSLNSGAGTCHDCGNQAKKDCSHRRCR 120
           LMISRGGD GGGGGGG+QFHGNNFDGFGFLGGGSSLNSG GTCHDCGNQAKKDC+HRRCR
Sbjct: 61  LMISRGGD-GGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCR 120

Query: 121 SCCKSRGFDCATHVKSTWVPAARRRERQLLSAAADAAATAGGTSSGSTSGGKKPRLIASQ 180
           SCCKSRGFDCATHVKSTWVPAARRRERQ+LSAAA AAAT GGTSSGSTSGGKKPRLIASQ
Sbjct: 121 SCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAAT-GGTSSGSTSGGKKPRLIASQ 180

Query: 181 TTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGGGG 240
           TTTNSHTSTSNTPTRSFDT S  DMS K+AKKLPEQVRAPAVFKCV+VTAVE  GGG GG
Sbjct: 181 TTTNSHTSTSNTPTRSFDTCS--DMSYKRAKKLPEQVRAPAVFKCVRVTAVE--GGGTGG 240

Query: 241 NEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP--SDLHLGGGGDGGSTSSPIIHPTDVYG 300
           NEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFP  SDLHLGGGGDGGSTSSPII P+DVYG
Sbjct: 241 NEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYG 300

Query: 301 SSASRGGGLAGGSGYGNPIN 319
           SSA RGGGLAG SGYGNPIN
Sbjct: 301 SSAGRGGGLAGSSGYGNPIN 311

[Close]

BLAST of Tan0020961 vs. ExPASy TrEMBL
Match: A0A5A7UJ85 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00230 PE=3 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 1.5e-133
Identity = 273/320 (85.31%), Postives = 285/320 (89.06%), Query Frame = 0


Query: 1   MWPSSSSSSRPIAGGYGPTAAPPTDMVGLMASGFGVGVGVSVLPLLTGLAPSSVGIEEAN 60
           MWP    SSRP+  GY  T AP  DMVGLMASGF  GVGVSVLPLLTGLAPSSVGIEEAN
Sbjct: 62  MWP----SSRPLTIGYNHTPAPTPDMVGLMASGF--GVGVSVLPLLTGLAPSSVGIEEAN 121

Query: 61  LMISRGGDGGGGGGGGIQFHGNNFDGFGFLGGGSSLNSGAGTCHDCGNQAKKDCSHRRCR 120
           LMISRGG GG  GGGGIQF+GNN DGFG LGGGSSLNSG GTCHDCGNQAKKDCSHRRCR
Sbjct: 122 LMISRGG-GGDEGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCR 181

Query: 121 SCCKSRGFDCATHVKSTWVPAARRRERQLLSAAADAAATAGGTSSGSTSGGKKPRLIASQ 180
           SCCKSRGFDC+THVKSTWVPAARRRERQ++ AA+DAA  AGGTSSGSTSGGKKPRLIASQ
Sbjct: 182 SCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAA--AGGTSSGSTSGGKKPRLIASQ 241

Query: 181 TTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGGGG 240
           TTTNSHTSTSNTPT SFD SSAADMS KKAKKLPEQ+RAPAVFKCV+VTAVEG G  GGG
Sbjct: 242 TTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEG-GSSGGG 301

Query: 241 NEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP--SDLHLGGGGDGGSTSSPIIHPTDVYG 300
           NEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP  S+LHL   GDGGSTSSP+I P+DVYG
Sbjct: 302 NEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHL---GDGGSTSSPVIDPSDVYG 361

Query: 301 SSASRGGGLAGGSGYGNPIN 319
           SSA+RGGGLAGGSGYGN IN
Sbjct: 362 SSATRGGGLAGGSGYGNSIN 368

[Close]

BLAST of Tan0020961 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 208.4 bits (529), Expect = 8.6e-54
Identity = 143/287 (49.83%), Postives = 176/287 (61.32%), Query Frame = 0


Query: 38  VGVSVLPLLTGLAPSSVGIEEANLMISRGGDGGGGGGGG-----IQFHGNNFDGFGFLGG 97
           +GV V+PLLT   P    +E++++                    + F   N    G    
Sbjct: 40  LGVGVIPLLTAGTPQQ-NVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSN 99

Query: 98  GSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQL 157
            S   SGA    TC DCGNQAKK+C  RRCR+CCKSRGFDC+THVKSTWV AARRRERQ+
Sbjct: 100 NSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQV 159

Query: 158 LSAAADAAATAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTSSAADM 217
           +   A+  A   G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+TSS+   
Sbjct: 160 MPTGANPTA---GSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQD 219

Query: 218 SCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGGGGNEYAYQAVVKIGGHVFKGYLYDHGV 277
                +  P QVRA AVFKCV+VTAVE      G +EYAYQAVVKIGGHVFKG+LYD G+
Sbjct: 220 GGGSREAWPGQVRAAAVFKCVRVTAVE-----DGDDEYAYQAVVKIGGHVFKGFLYDQGL 279

Query: 278 EARDGFP--SDLHLGGGG---DGGSTSSPIIHPTD-VYGSSASRGGG 307
           E ++GFP  SDLHLGG     +G S S+PI+ P + VYG     GGG
Sbjct: 280 EPKEGFPSMSDLHLGGSANNHNGVSASAPILDPPNVVYGGGGGSGGG 317

[Close]

BLAST of Tan0020961 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 208.4 bits (529), Expect = 8.6e-54
Identity = 143/287 (49.83%), Postives = 176/287 (61.32%), Query Frame = 0


Query: 38  VGVSVLPLLTGLAPSSVGIEEANLMISRGGDGGGGGGGG-----IQFHGNNFDGFGFLGG 97
           +GV V+PLLT   P    +E++++                    + F   N    G    
Sbjct: 40  LGVGVIPLLTAGTPQQ-NVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSN 99

Query: 98  GSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQL 157
            S   SGA    TC DCGNQAKK+C  RRCR+CCKSRGFDC+THVKSTWV AARRRERQ+
Sbjct: 100 NSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQV 159

Query: 158 LSAAADAAATAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTSSAADM 217
           +   A+  A   G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+TSS+   
Sbjct: 160 MPTGANPTA---GSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQD 219

Query: 218 SCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGGGGNEYAYQAVVKIGGHVFKGYLYDHGV 277
                +  P QVRA AVFKCV+VTAVE      G +EYAYQAVVKIGGHVFKG+LYD G+
Sbjct: 220 GGGSREAWPGQVRAAAVFKCVRVTAVE-----DGDDEYAYQAVVKIGGHVFKGFLYDQGL 279

Query: 278 EARDGFP--SDLHLGGGG---DGGSTSSPIIHPTD-VYGSSASRGGG 307
           E ++GFP  SDLHLGG     +G S S+PI+ P + VYG     GGG
Sbjct: 280 EPKEGFPSMSDLHLGGSANNHNGVSASAPILDPPNVVYGGGGGSGGG 317

[Close]

BLAST of Tan0020961 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 208.4 bits (529), Expect = 8.6e-54
Identity = 143/287 (49.83%), Postives = 176/287 (61.32%), Query Frame = 0


Query: 38  VGVSVLPLLTGLAPSSVGIEEANLMISRGGDGGGGGGGG-----IQFHGNNFDGFGFLGG 97
           +GV V+PLLT   P    +E++++                    + F   N    G    
Sbjct: 127 LGVGVIPLLTAGTPQQ-NVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSN 186

Query: 98  GSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQL 157
            S   SGA    TC DCGNQAKK+C  RRCR+CCKSRGFDC+THVKSTWV AARRRERQ+
Sbjct: 187 NSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQV 246

Query: 158 LSAAADAAATAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTRSFDTSSAADM 217
           +   A+  A   G+S  ++SG KKPR++ S    Q    SHTSTSNTP +SF+TSS+   
Sbjct: 247 MPTGANPTA---GSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQD 306

Query: 218 SCKKAKKLPEQVRAPAVFKCVQVTAVEGSGGGGGGNEYAYQAVVKIGGHVFKGYLYDHGV 277
                +  P QVRA AVFKCV+VTAVE      G +EYAYQAVVKIGGHVFKG+LYD G+
Sbjct: 307 GGGSREAWPGQVRAAAVFKCVRVTAVE-----DGDDEYAYQAVVKIGGHVFKGFLYDQGL 366

Query: 278 EARDGFP--SDLHLGGGG---DGGSTSSPIIHPTD-VYGSSASRGGG 307
           E ++GFP  SDLHLGG     +G S S+PI+ P + VYG     GGG
Sbjct: 367 EPKEGFPSMSDLHLGGSANNHNGVSASAPILDPPNVVYGGGGGSGGG 404

[Close]

BLAST of Tan0020961 vs. TAIR 10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 132.1 bits (331), Expect = 7.8e-31
Identity = 89/217 (41.01%), Postives = 117/217 (53.92%), Query Frame = 0


Query: 102 TCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQLLSAAADAAATAG 161
           +C DCGNQAKKDC+H RCR+CCKSRGFDC+THV+STW+P ARRRERQ     + +    G
Sbjct: 93  SCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGG 152

Query: 162 GTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKLPEQVRAPA 221
             S G+  GG          T    +S+S  P+ S      A +   +A   P +V + A
Sbjct: 153 SGSGGAGGGGSSIPKRHRDPTLPGTSSSSRLPSHS------AGLEMGEA-SFPGEVSSDA 212

Query: 222 VFKCVQVTAVEGSGGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPSDLHLGGGG 281
           +F+CV+++ V+     GG  +YAYQ  V IGGH+FKG LYD G       P   ++ GG 
Sbjct: 213 LFRCVKMSGVD----DGGDGQYAYQTTVNIGGHLFKGILYDQG-------PESSYMSGGS 272

Query: 282 DGGSTSSPIIHPTDVYGSSASRGGGLAGGSGYGNPIN 319
            G          +D   SSA  GGG       G+P N
Sbjct: 273 GG----------SDHQSSSAGGGGG-------GHPFN 274

[Close]

BLAST of Tan0020961 vs. TAIR 10
Match: AT5G66350.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 125.2 bits (313), Expect = 9.6e-29
Identity = 89/228 (39.04%), Postives = 118/228 (51.75%), Query Frame = 0


Query: 94  SSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQLLSAA 153
           S   SG  +C DCGNQ+KKDCSH RCR+CCKSRG DC THVKSTWVPAA+RRERQ   + 
Sbjct: 111 SGSGSGGPSCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLST 170

Query: 154 ADAAATAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTSSAADMSCKKAKKL 213
                  GG+        ++   I +++T+ ++T   +  T   +  +            
Sbjct: 171 GQQPQQLGGSVP-----KRQRERIPARSTSMAYTRIPSNNTSGLEVGN-----------F 230

Query: 214 PEQVRAPAVFKCVQVTAVEGSGGGGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARD---G 273
           P +V + AVF+CV+V++V+         EYAY+  V IGGHVFKG LYD G   R    G
Sbjct: 231 PPEVSSSAVFRCVRVSSVDDE-----EEEYAYKTAVSIGGHVFKGVLYDQGPAERSSSGG 290

Query: 274 FPSDLHLGGGGDGGSTSSPIIHPTDVYGSSASRGGGLAGGSGYGNPIN 319
               L+L   G   S+SSP +   +    S S          Y  PIN
Sbjct: 291 GSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASLNYPTPIN 317

The following BLAST results are available for this feature:

BLAST of Tan0020961 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CK9	1.2e-52	49.83	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
O65517	1.1e-29	41.01	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1	[more]
Q9XGX0	1.3e-27	39.04	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
K4B6C9	3.0e-27	39.56	Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 ...	[more]
Q9LQZ5	5.1e-27	43.01	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]

BLAST of Tan0020961 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588219.1	1.8e-146	89.75	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022974160.1	5.3e-146	90.34	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita maxima]	[more]
XP_023531847.1	1.2e-145	90.34	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022933450.1	5.8e-145	90.00	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita moschata]	[more]
XP_022974168.1	1.1e-143	89.72	protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Tan0020961 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ID91	2.6e-146	90.34	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1F4X3	2.8e-145	90.00	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1IFF1	5.3e-144	89.72	protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1EZ30	5.9e-143	89.38	protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucurbita moschata OX=3662 ...	[more]
A0A5A7UJ85	1.5e-133	85.31	Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Tan0020961 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12330.2	8.6e-54	49.83	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.1	8.6e-54	49.83	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.4	8.6e-54	49.83	Lateral root primordium (LRP) protein-related	[more]
AT4G36260.1	7.8e-31	41.01	Lateral root primordium (LRP) protein-related	[more]
AT5G66350.1	9.6e-29	39.04	Lateral root primordium (LRP) protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 213..265 e-value: 1.8E-22 score: 77.0
None	No IPR available	PFAM	PF05142	DUF702	coord: 102..266 e-value: 1.7E-56 score: 190.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..303
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..201
None	No IPR available	PANTHER	PTHR31604:SF30	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 91..318
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 102..144 e-value: 3.0E-25 score: 85.9
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 91..318

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020961.1	Tan0020961.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding