Tan0020939 (gene) Snake gourd v1

Overview


Name	Tan0020939
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	CACTA en-spm transposon protein
Location	LG05: 68946770 .. 68947881 (-)
RNA-Seq Expression	Tan0020939
Synteny	Tan0020939

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGATGAGGACGATCATGTAGAAATGAATGAAGCAACATCCTCTAATAGTAACCAGGTTCGTGGGTTTTCACGTGGACTTGCCCTGACTAGGATTATTAAGGCCACAGGGGATAAAGTAAGTGTTACATGGAGTCTACAACAAGACAAATCAGTTGGAAGTGTTGTTAGTCTCTTTAACAGTGAAATTAGAATTTTGACGAGGACGTTTGTCCCCTTGAACTATGCAACTAAGTATGACATTCCAAATGAAGTTTTTACCAACATAATAGATCGATTGCTGGTAAATTAGATAATTTGCTAACAAGTTTATTATTGAATTACAATTAAATACTAACGAGTGATATTTATTTATTGGTTAGAATAAATTCGATGTAGACATTAGAGGAACATATTAAAAATTATATTTGTTGCGAGATTGGAAATCGATATAAGGATTACCGATCGAGGATGTATCAATACTACAGAAAACTCGTGAACCTCCACACAAGGTTGTTTCACCTGAAGATTTGAGAATGTTATGTGATAGATGGGAGACTCGTGAATGGAAGGTAAATATTAGCTAAATTTTAAATAATACACGAGTCTCTTTTATTACCATACATTATAATGCAGGACAAGTCAACGAAGAACAAGGCTAGTGGAAGCAAACTCCCTTTCAATCATTGTGCTGGAACAAAATCATTTCTTACTCATAGAGAAGAAAAGGTATGTTATATATACTTTATTTCTAGTTTTTCAGTACTTTAGTGTTCAAGAAGGTAATAAGGTTTATTAATATATCTAATAAAAAAAGAAGATGGTACATATTTGAGCCCTATTAAGATCTTCCATCAAACTCATTGGTCTGTTGCAGCAAGTGAAACACATGTAAGTATCTTTTAGATGTTCTAATGGACAATATTAAGTTTTTGAAGATCAATATCATTTATATATTATTTTTTATGTATATAGGCAAAAATGGTGGCACTAGCAAAAGAGCAAGCCAACTCTAGTACACCAATGAATGACGAAGAAGTTGTGGCTACCGTTCTTGGAACACGATTGCCCTATGTTAAAGGAATGGGATATGGACTAAAACCACCACCATCTCAGAAGAAATCATACTGA

mRNA sequence

ATGCATGATGAGGACGATCATGTAGAAATGAATGAAGCAACATCCTCTAATAGTAACCAGGTTCGTGGGTTTTCACGTGGACTTGCCCTGACTAGGATTATTAAGGCCACAGGGGATAAAGTAAGTGTTACATGGAGTCTACAACAAGACAAATCAGTTGGAAGTGTTGTTAGTCTCTTTAACAGTGAAATTAGAATTTTGACGAGGACGTTTGTCCCCTTGAACTATGCAACTAAGTATGACATTCCAAATGAAGTTTTTACCAACATAATAGATCGATTGCTGGACAAGTCAACGAAGAACAAGGCTAGTGGAAGCAAACTCCCTTTCAATCATTGTGCTGGAACAAAATCATTTCTTACTCATAGAGAAGAAAAGGCAAAAATGGTGGCACTAGCAAAAGAGCAAGCCAACTCTAGTACACCAATGAATGACGAAGAAGTTGTGGCTACCGTTCTTGGAACACGATTGCCCTATGTTAAAGGAATGGGATATGGACTAAAACCACCACCATCTCAGAAGAAATCATACTGA

Coding sequence (CDS)

ATGCATGATGAGGACGATCATGTAGAAATGAATGAAGCAACATCCTCTAATAGTAACCAGGTTCGTGGGTTTTCACGTGGACTTGCCCTGACTAGGATTATTAAGGCCACAGGGGATAAAGTAAGTGTTACATGGAGTCTACAACAAGACAAATCAGTTGGAAGTGTTGTTAGTCTCTTTAACAGTGAAATTAGAATTTTGACGAGGACGTTTGTCCCCTTGAACTATGCAACTAAGTATGACATTCCAAATGAAGTTTTTACCAACATAATAGATCGATTGCTGGACAAGTCAACGAAGAACAAGGCTAGTGGAAGCAAACTCCCTTTCAATCATTGTGCTGGAACAAAATCATTTCTTACTCATAGAGAAGAAAAGGCAAAAATGGTGGCACTAGCAAAAGAGCAAGCCAACTCTAGTACACCAATGAATGACGAAGAAGTTGTGGCTACCGTTCTTGGAACACGATTGCCCTATGTTAAAGGAATGGGATATGGACTAAAACCACCACCATCTCAGAAGAAATCATACTGA

Protein sequence

MHDEDDHVEMNEATSSNSNQVRGFSRGLALTRIIKATGDKVSVTWSLQQDKSVGSVVSLFNSEIRILTRTFVPLNYATKYDIPNEVFTNIIDRLLDKSTKNKASGSKLPFNHCAGTKSFLTHREEKAKMVALAKEQANSSTPMNDEEVVATVLGTRLPYVKGMGYGLKPPPSQKKSY

Homology

[Close]

BLAST of Tan0020939 vs. NCBI nr
Match: XP_038895319.1 (uncharacterized protein LOC120083572 isoform X1 [Benincasa hispida])

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-15
Identity = 75/275 (27.27%), Postives = 108/275 (39.27%), Query Frame = 0


Query: 2   HDEDDHVEMNEATSSNSNQVRGFSRGLALTRIIKATGDKVSVTWSLQQDKSVGSVVSLFN 61
           HD+  +       +    +VRG SRG+ L +   AT  ++ VTW+  Q K +G + SLFN
Sbjct: 118 HDDFVYPNTTNDMTRAERRVRGASRGVRLNK-TTATMGRIKVTWTPTQGKPIGDMASLFN 177

Query: 62  SEIRILTRTFVPLNYATKYDIPNEVFTNIIDRLL-------------------------- 121
            EI +L R F+PL Y  + DIPNE++  + ++LL                          
Sbjct: 178 GEIGVLVRKFIPLKYEKQKDIPNELYDILTEQLLNQFDVDISQPHIKRYIYYEIGNRFKD 237

Query: 122 --------------------------------------------DKSTKNKASGSKLPFN 177
                                                       +KS +NK S SK+ FN
Sbjct: 238 YRWTLYKHYQKYADPVEARRNPYKYTTTDDWNILCDRWESSSWKEKSARNKVSRSKIRFN 297

[Close]

BLAST of Tan0020939 vs. NCBI nr
Match: KAB1223933.1 (hypothetical protein CJ030_MR2G000632 [Morella rubra])

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-12
Identity = 54/172 (31.40%), Postives = 92/172 (53.49%), Query Frame = 0


Query: 13  ATSSNSNQVRGFSRGLALTRIIKATGDKVSVTWSLQQDKSVGSVVSLFNSEIRILTRTFV 72
           A++S S + RG +RG++L + + +   K+SV     +   V S  ++ +++I +L R  +
Sbjct: 49  ASTSASKRGRGRTRGVSLEKSLGSGSAKLSVHIPEGECGGVSSTAAILSTKIGMLVRGLI 108

Query: 73  PLNYATKYDIPNEVFTNIIDRLLD------------KSTKNKASGSKLPFNHCAGTKSFL 132
           P++     D+P EV   I+DR+LD            +S +NK + SKL  NH AG++SF 
Sbjct: 109 PISVNKWVDVPTEVKEYIMDRVLDQFDLDYTRHEDKRSEQNKKNRSKLTVNHAAGSRSFQ 168

Query: 133 THREEKAKMVALAKEQANSSTPMNDEEVVATVLGTRLPYVKGMGYGLKPPPS 173
             R    +M A  ++         + EV + +LG +  YV+G+G  +KPPPS
Sbjct: 169 RTRACMERMDAFQRKCDLEGKTYTEIEVYSEILGKKSGYVRGLGRAVKPPPS 220

[Close]

BLAST of Tan0020939 vs. NCBI nr
Match: XP_020252357.1 (uncharacterized protein LOC109829729 [Asparagus officinalis])

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-11
Identity = 54/195 (27.69%), Postives = 89/195 (45.64%), Query Frame = 0


Query: 12  EATSSNSNQVRGFSRGLALTRIIKATGDKVSVTWSLQQDKSVGSVVSLFNSEIRILTRTF 71
           E     + +VRG +RG+   ++      K+ VT + + D+  G    +F +EI    R +
Sbjct: 126 EHPPGTTKKVRGKTRGVNADKVFFQLNSKILVTLTEENDRPTGPYAEMFANEIGYTIRNY 185

Query: 72  VPLNYATKYDIPNEVFTNIIDRLLDKSTKNKASGSKLPFNHCAGTKSFLTHREE------ 131
            PLN      I      N+I R+  +S KN  + SKL ++H AG+KSF++H+E+      
Sbjct: 186 APLNVEKWKKIEKADVENLIKRMQIRSEKNVLNRSKLTYHHKAGSKSFMSHQEQIATQTG 245

Query: 132 ------------------------KAKMVALAKEQANSSTP-----MNDEEVVATVLGTR 172
                                   K K   + K +A+++ P     M DE++ A VL  +
Sbjct: 246 EMQGAIDRFETKYRSTKKGWDLGAKKKWDQMIKMRADTTQPDGTRIMTDEKICAKVLKVK 305

[Close]

BLAST of Tan0020939 vs. NCBI nr
Match: XP_038895321.1 (uncharacterized protein LOC120083572 isoform X3 [Benincasa hispida])

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-10
Identity = 55/197 (27.92%), Postives = 80/197 (40.61%), Query Frame = 0


Query: 2   HDEDDHVEMNEATSSNSNQVRGFSRGLALTRIIKATGDKVSVTWSLQQDKSVGSVVSLFN 61
           HD+  +       +    +VRG SRG+ L +   AT  ++ VTW+  Q K +G + SLFN
Sbjct: 118 HDDFVYPNTTNDMTRAERRVRGASRGVRLNK-TTATMGRIKVTWTPTQGKPIGDMASLFN 177

Query: 62  SEIRILTRTFVPLNYATKYDIPNEVFTNIIDRLL-------------------------- 121
            EI +L R F+PL Y  + DIPNE++  + ++LL                          
Sbjct: 178 GEIGVLVRKFIPLKYEKQKDIPNELYDILTEQLLNQFDVDISQPHIKRYIYYEIGNRFKD 237

Query: 122 --------------------------------------------DKSTKNKASGSKLPFN 129
                                                       +KS +NK S SK+ FN
Sbjct: 238 YRWTLYKHYQKYADPVEARRNPYKYTTTDDWNILCDRWESSSWKEKSARNKVSRSKIRFN 297

[Close]

BLAST of Tan0020939 vs. NCBI nr
Match: XP_038895320.1 (uncharacterized protein LOC120083572 isoform X2 [Benincasa hispida])

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-10
Identity = 55/197 (27.92%), Postives = 80/197 (40.61%), Query Frame = 0


Query: 2   HDEDDHVEMNEATSSNSNQVRGFSRGLALTRIIKATGDKVSVTWSLQQDKSVGSVVSLFN 61
           HD+  +       +    +VRG SRG+ L +   AT  ++ VTW+  Q K +G + SLFN
Sbjct: 118 HDDFVYPNTTNDMTRAERRVRGASRGVRLNK-TTATMGRIKVTWTPTQGKPIGDMASLFN 177

Query: 62  SEIRILTRTFVPLNYATKYDIPNEVFTNIIDRLL-------------------------- 121
            EI +L R F+PL Y  + DIPNE++  + ++LL                          
Sbjct: 178 GEIGVLVRKFIPLKYEKQKDIPNELYDILTEQLLNQFDVDISQPHIKRYIYYEIGNRFKD 237

Query: 122 --------------------------------------------DKSTKNKASGSKLPFN 129
                                                       +KS +NK S SK+ FN
Sbjct: 238 YRWTLYKHYQKYADPVEARRNPYKYTTTDDWNILCDRWESSSWKEKSARNKVSRSKIRFN 297

[Close]

BLAST of Tan0020939 vs. ExPASy TrEMBL
Match: A0A6A1WGC8 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G000632 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.1e-13
Identity = 54/172 (31.40%), Postives = 92/172 (53.49%), Query Frame = 0


Query: 13  ATSSNSNQVRGFSRGLALTRIIKATGDKVSVTWSLQQDKSVGSVVSLFNSEIRILTRTFV 72
           A++S S + RG +RG++L + + +   K+SV     +   V S  ++ +++I +L R  +
Sbjct: 49  ASTSASKRGRGRTRGVSLEKSLGSGSAKLSVHIPEGECGGVSSTAAILSTKIGMLVRGLI 108

Query: 73  PLNYATKYDIPNEVFTNIIDRLLD------------KSTKNKASGSKLPFNHCAGTKSFL 132
           P++     D+P EV   I+DR+LD            +S +NK + SKL  NH AG++SF 
Sbjct: 109 PISVNKWVDVPTEVKEYIMDRVLDQFDLDYTRHEDKRSEQNKKNRSKLTVNHAAGSRSFQ 168

Query: 133 THREEKAKMVALAKEQANSSTPMNDEEVVATVLGTRLPYVKGMGYGLKPPPS 173
             R    +M A  ++         + EV + +LG +  YV+G+G  +KPPPS
Sbjct: 169 RTRACMERMDAFQRKCDLEGKTYTEIEVYSEILGKKSGYVRGLGRAVKPPPS 220

[Close]

BLAST of Tan0020939 vs. ExPASy TrEMBL
Match: A0A6J1CQT5 (uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013476 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.6e-10
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 81  DIPNEVFTNIIDRL-----LDKSTKNKASGSKLPFNHCAGTKSFLTHREEKAKMVALAKE 140
           DI  E +  + D+L      +KS KNK + SKL FNH  G K F  HRE+  +M+ L   
Sbjct: 54  DIKQEDWNILCDKLESLAWKEKSAKNKVARSKLRFNHRGGPKPFQCHREDSEEMITLKAY 113

Query: 141 QANSSTPMNDEEVVATVLGTRLPYVKGMGYGLKPPPSQKKS 177
            A+      +EE++ TVLG R  YV GMGYG KP  ++  S
Sbjct: 114 HASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSS 154

[Close]

BLAST of Tan0020939 vs. ExPASy TrEMBL
Match: A0A6J1D6S9 (uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017461 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.6e-10
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 81  DIPNEVFTNIIDRL-----LDKSTKNKASGSKLPFNHCAGTKSFLTHREEKAKMVALAKE 140
           DI  E +  + D+L      +KS KNK + SKL FNH  G K F  HRE+  +M+ L   
Sbjct: 59  DIKQEDWNILCDKLESLAWKEKSAKNKVARSKLRFNHRGGPKPFQCHREDSEEMITLKAY 118

Query: 141 QANSSTPMNDEEVVATVLGTRLPYVKGMGYGLKPPPSQKKS 177
            A+      +EE++ TVLG R  YV GMGYG KP  ++  S
Sbjct: 119 HASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSS 159

[Close]

BLAST of Tan0020939 vs. ExPASy TrEMBL
Match: A0A6J1DLF1 (uncharacterized protein LOC111021138 OS=Momordica charantia OX=3673 GN=LOC111021138 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 81  DIPNEVFTNIIDRL-----LDKSTKNKASGSKLPFNHCAGTKSFLTHREEKAKMVALAKE 140
           DI  E +  + DRL      +KS KNK + SKL FNH    K F  HRE+  +M+ L   
Sbjct: 54  DIKQEDWNILCDRLEFPAWKEKSAKNKMASSKLRFNHRGEPKPFQCHREDSEEMITLKAN 113

Query: 141 QANSSTPMNDEEVVATVLGTRLPYVKGMGYGLKP 170
            A+      +EE++ TVLG R  Y+ GMGYG KP
Sbjct: 114 HASQGDEKTEEEIMETVLGRRSNYIIGMGYGPKP 147

[Close]

BLAST of Tan0020939 vs. ExPASy TrEMBL
Match: A0A6A1WGQ9 (Receptor-like protein 12 OS=Morella rubra OX=262757 GN=CJ030_MR2G019397 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.1e-08
Identity = 55/206 (26.70%), Postives = 93/206 (45.15%), Query Frame = 0


Query: 13  ATSSNSNQVRGFSRGLALTRIIKATGDKVSVTWSLQQDKSVGSVVSLFNSEIRILTRTFV 72
           A++S S + RG +RG++L + + +   K+SV     +   V S  ++ +++I +L R  +
Sbjct: 574 ASTSASKRGRGRTRGVSLEKSLGSGSAKLSVHIPEGECGGVSSTAAILSTKIGMLVRGLI 633

Query: 73  PLNYATKYDIPNEVFTNIIDRLLD------------KSTKNKASGSKLPFNHCAGTKSFL 132
           P++     D+P EV   I+DR+LD            +S +NK + SKL  NH AG++SF 
Sbjct: 634 PISVNKWVDVPAEVKEYIMDRVLDHFDLDYTRHEDKRSEQNKKNRSKLTVNHAAGSRSFQ 693

Query: 133 T----------------------------------HREEKAKMVALAKEQANSSTPMNDE 173
                                               RE   +M A  ++         + 
Sbjct: 694 RTRACMKNQESGNINPAELYKKNYTNKDGIWTSEGAREIYERMDAFQRQCDLEGKTYTEI 753

The following BLAST results are available for this feature:

BLAST of Tan0020939 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0020939 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895319.1	3.2e-15	27.27	uncharacterized protein LOC120083572 isoform X1 [Benincasa hispida]	[more]
KAB1223933.1	1.5e-12	31.40	hypothetical protein CJ030_MR2G000632 [Morella rubra]	[more]
XP_020252357.1	1.6e-11	27.69	uncharacterized protein LOC109829729 [Asparagus officinalis]	[more]
XP_038895321.1	2.3e-10	27.92	uncharacterized protein LOC120083572 isoform X3 [Benincasa hispida]	[more]
XP_038895320.1	2.3e-10	27.92	uncharacterized protein LOC120083572 isoform X2 [Benincasa hispida]	[more]

BLAST of Tan0020939 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A1WGC8	7.1e-13	31.40	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G000632 PE=4 SV=1	[more]
A0A6J1CQT5	9.6e-10	41.58	uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1D6S9	9.6e-10	41.58	uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DLF1	2.1e-09	42.55	uncharacterized protein LOC111021138 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6A1WGQ9	3.1e-08	26.70	Receptor-like protein 12 OS=Morella rubra OX=262757 GN=CJ030_MR2G019397 PE=4 SV=...	[more]

BLAST of Tan0020939 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020939.1	Tan0020939.1	mRNA