Tan0020870 (gene) Snake gourd v1

Overview


Name	Tan0020870
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	60S ribosomal protein L27
Location	LG01: 9619367 .. 9620107 (+)
RNA-Seq Expression	Tan0020870
Synteny	Tan0020870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAAATCCACGCTTCGTCTGTTGGAGCCGACGCGAAGGAGAAAACACACACAGAGAAGGAGAAATCCTACAATGGTGAAGTTCCTCAAGCCGAATAAAGCTGTTGTCGTCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGACGGAACTCGGGATCGTGCTTATGGTCACTGCTTGGTCGCCGGAATCAAGAAGTACCCGGCCAAGGTCATCCGCAAGGACTCTTCTAAAAAGACTGCGAAGAAATCGAGAGTCAAGGCCTTCATCAAACTCGTCAATTACAGGCACCTAATGCCCACCAGGTACACTCTCGATGTGGATCTTAAGGACGTCGTCACCATCGATTCATTGCAGTCGAAGGACAAGAAGGTTACGGCCGCTAAGGAGACAAAGAAGAGATTCGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTTTTCACTAAGCTCAGGTTCTGAAGAGGCTCGTTCAGTGATGGGTTTGTTCTGGATTACTCTCGTTTTAGGTTACTGAGCAGCTTTATTTTTGTTTTCCATTTTGTTTTGGAGTAATCGTACGTTTTATATGAAAAAAGGTAGTTTGTTTTGGTGTTTAATTTTTGTGTGGACGTACTTTAATGTTTTGGATGAGAAATTTCTGGTTTTACAATGCTACATTCTAGACTTCACTTATTTATCTTCACAAAAGTTTTGGCTTATGTGATAATATTGTTATTCGTA

mRNA sequence

CCTAAATCCACGCTTCGTCTGTTGGAGCCGACGCGAAGGAGAAAACACACACAGAGAAGGAGAAATCCTACAATGGTGAAGTTCCTCAAGCCGAATAAAGCTGTTGTCGTCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGACGGAACTCGGGATCGTGCTTATGGTCACTGCTTGGTCGCCGGAATCAAGAAGTACCCGGCCAAGGTCATCCGCAAGGACTCTTCTAAAAAGACTGCGAAGAAATCGAGAGTCAAGGCCTTCATCAAACTCGTCAATTACAGGCACCTAATGCCCACCAGGTACACTCTCGATGTGGATCTTAAGGACGTCGTCACCATCGATTCATTGCAGTCGAAGGACAAGAAGGTTACGGCCGCTAAGGAGACAAAGAAGAGATTCGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTTTTCACTAAGCTCAGGTTCTGAAGAGGCTCGTTCAGTGATGGGTTTGTTCTGGATTACTCTCGTTTTAGGTTACTGAGCAGCTTTATTTTTGTTTTCCATTTTGTTTTGGAGTAATCGTACGTTTTATATGAAAAAAGGTAGTTTGTTTTGGTGTTTAATTTTTGTGTGGACGTACTTTAATGTTTTGGATGAGAAATTTCTGGTTTTACAATGCTACATTCTAGACTTCACTTATTTATCTTCACAAAAGTTTTGGCTTATGTGATAATATTGTTATTCGTA

Coding sequence (CDS)

ATGGTGAAGTTCCTCAAGCCGAATAAAGCTGTTGTCGTCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGACGGAACTCGGGATCGTGCTTATGGTCACTGCTTGGTCGCCGGAATCAAGAAGTACCCGGCCAAGGTCATCCGCAAGGACTCTTCTAAAAAGACTGCGAAGAAATCGAGAGTCAAGGCCTTCATCAAACTCGTCAATTACAGGCACCTAATGCCCACCAGGTACACTCTCGATGTGGATCTTAAGGACGTCGTCACCATCGATTCATTGCAGTCGAAGGACAAGAAGGTTACGGCCGCTAAGGAGACAAAGAAGAGATTCGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTTTTCACTAAGCTCAGGTTCTGA

Protein sequence

MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

Homology

[Close]

BLAST of Tan0020870 vs. ExPASy Swiss-Prot
Match: Q05462 (60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.2e-59
Identity = 113/135 (83.70%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV++LQGRYAG+KAVI++ FDDGTR++ YGHCLVAGIKK+P+KVI+KDS+K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKD V  D LQSKDKKVTA KETKK  EER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. ExPASy Swiss-Prot
Match: Q8LCL3 (60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-58
Identity = 112/135 (82.96%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAV++LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L+SKDKKVTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. ExPASy Swiss-Prot
Match: P51419 (60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-58
Identity = 112/135 (82.96%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAV++LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. ExPASy Swiss-Prot
Match: Q9SKX8 (60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-54
Identity = 101/135 (74.81%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVK +KP KAV++LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++ SKDKKVTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. ExPASy Swiss-Prot
Match: P41101 (60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 6.7e-53
Identity = 108/139 (77.70%), Postives = 119/139 (85.61%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           M KFLKPNKAV++LQG+YAGRKAVI+RAFD+GTRDR YGHCLVAGI +YP KVIRKDS+K
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVTIDSLQSKDKKVTAAKETKKR 120
           K  KKSRVKAFIKLVNY H+MPTRYTLD DL    KDVV  D LQ++DKKVT A+ TK R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVT-ARRTKAR 120

Query: 121 FEERFKTGKNRWFFTKLRF 136
             ERFKTGKNRWFFTKLRF
Sbjct: 121 LAERFKTGKNRWFFTKLRF 138

[Close]

BLAST of Tan0020870 vs. NCBI nr
Match: XP_004147740.1 (60S ribosomal protein L27 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 132/135 (97.78%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. NCBI nr
Match: KAE8649234.1 (hypothetical protein Csa_014974 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 132/135 (97.78%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 29  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 88

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKVTAAKETKKRFEER
Sbjct: 89  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 148

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 149 FKTGKNRWFFTKLRF 163

[Close]

BLAST of Tan0020870 vs. NCBI nr
Match: XP_004147739.1 (60S ribosomal protein L27 [Cucumis sativus] >KGN53499.1 hypothetical protein Csa_014739 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 131/135 (97.04%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. NCBI nr
Match: XP_008451849.1 (PREDICTED: 60S ribosomal protein L27-like [Cucumis melo] >KAA0062918.1 60S ribosomal protein L27-like [Cucumis melo var. makuwa] >TYK16424.1 60S ribosomal protein L27-like [Cucumis melo var. makuwa])

HSP 1 Score: 258.8 bits (660), Expect = 2.5e-65
Identity = 132/135 (97.78%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. NCBI nr
Match: XP_022931548.1 (60S ribosomal protein L27-2-like [Cucurbita moschata] >XP_022942298.1 60S ribosomal protein L27-2-like [Cucurbita moschata] >XP_022983312.1 60S ribosomal protein L27-2-like [Cucurbita maxima] >XP_022985030.1 60S ribosomal protein L27-2-like [Cucurbita maxima] >XP_023521538.1 60S ribosomal protein L27-2-like [Cucurbita pepo subsp. pepo] >XP_023548326.1 60S ribosomal protein L27-2-like [Cucurbita pepo subsp. pepo] >XP_023551847.1 60S ribosomal protein L27-2-like [Cucurbita pepo subsp. pepo] >KAG6577087.1 60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG6600449.1 60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.5 bits (659), Expect = 3.3e-65
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK
Sbjct: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. ExPASy TrEMBL
Match: A0A0A0KVB4 (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G062360 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.5e-66
Identity = 132/135 (97.78%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. ExPASy TrEMBL
Match: A0A0A0KXF9 (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G061860 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.2e-66
Identity = 131/135 (97.04%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. ExPASy TrEMBL
Match: A0A5A7V5M7 (60S ribosomal protein L27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002210 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65
Identity = 132/135 (97.78%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. ExPASy TrEMBL
Match: A0A1S3BT89 (60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103493014 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65
Identity = 132/135 (97.78%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLKPNKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+K
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKV+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. ExPASy TrEMBL
Match: A0A6J1JA75 (60S ribosomal protein L27 OS=Cucurbita maxima OX=3661 GN=LOC111483122 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAV+VLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK
Sbjct: 1   MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. TAIR 10
Match: AT3G22230.1 (Ribosomal L27e protein family )

HSP 1 Score: 227.3 bits (578), Expect = 7.6e-60
Identity = 112/135 (82.96%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAV++LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L+SKDKKVTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. TAIR 10
Match: AT4G15000.1 (Ribosomal L27e protein family )

HSP 1 Score: 227.3 bits (578), Expect = 7.6e-60
Identity = 112/135 (82.96%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAV++LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. TAIR 10
Match: AT2G32220.1 (Ribosomal L27e protein family )

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-55
Identity = 101/135 (74.81%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVK +KP KAV++LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++ SKDKKVTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Tan0020870 vs. TAIR 10
Match: AT4G15000.2 (Ribosomal L27e protein family )

HSP 1 Score: 202.2 bits (513), Expect = 2.6e-52
Identity = 100/123 (81.30%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MVKFLKPNKAVVVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSK 60
           MVKFLK NKAV++LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+LQSKDKKV A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKT 124
           FKT
Sbjct: 121 FKT 123

The following BLAST results are available for this feature:

BLAST of Tan0020870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q05462	2.2e-59	83.70	60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1	[more]
Q8LCL3	1.1e-58	82.96	60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2	[more]
P51419	1.1e-58	82.96	60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2	[more]
Q9SKX8	2.1e-54	74.81	60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1	[more]
P41101	6.7e-53	77.70	60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1	[more]

BLAST of Tan0020870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147740.1	1.1e-65	97.78	60S ribosomal protein L27 [Cucumis sativus]	[more]
KAE8649234.1	1.1e-65	97.78	hypothetical protein Csa_014974 [Cucumis sativus]	[more]
XP_004147739.1	1.5e-65	97.04	60S ribosomal protein L27 [Cucumis sativus] >KGN53499.1 hypothetical protein Csa...	[more]
XP_008451849.1	2.5e-65	97.78	PREDICTED: 60S ribosomal protein L27-like [Cucumis melo] >KAA0062918.1 60S ribos...	[more]
XP_022931548.1	3.3e-65	98.52	60S ribosomal protein L27-2-like [Cucurbita moschata] >XP_022942298.1 60S riboso...	[more]

BLAST of Tan0020870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVB4	5.5e-66	97.78	60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G062360 PE=3 SV=1	[more]
A0A0A0KXF9	7.2e-66	97.04	60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G061860 PE=3 SV=1	[more]
A0A5A7V5M7	1.2e-65	97.78	60S ribosomal protein L27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BT89	1.2e-65	97.78	60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103493014 PE=3 SV=1	[more]
A0A6J1JA75	1.6e-65	98.52	60S ribosomal protein L27 OS=Cucurbita maxima OX=3661 GN=LOC111483122 PE=3 SV=1	[more]

BLAST of Tan0020870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22230.1	7.6e-60	82.96	Ribosomal L27e protein family	[more]
AT4G15000.1	7.6e-60	82.96	Ribosomal L27e protein family	[more]
AT2G32220.1	1.5e-55	74.81	Ribosomal L27e protein family	[more]
AT4G15000.2	2.6e-52	81.30	Ribosomal L27e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..120
None	No IPR available	PANTHER	PTHR10497:SF16	60S RIBOSOMAL PROTEIN L27	coord: 1..135
IPR001141	Ribosomal protein L27e	PFAM	PF01777	Ribosomal_L27e	coord: 52..135 e-value: 3.1E-31 score: 107.6
IPR001141	Ribosomal protein L27e	PANTHER	PTHR10497	60S RIBOSOMAL PROTEIN L27	coord: 1..135
IPR038655	Ribosomal protein L27e superfamily	GENE3D	2.30.30.770		coord: 1..135 e-value: 1.2E-59 score: 202.2
IPR018262	Ribosomal protein L27e, conserved site	PROSITE	PS01107	RIBOSOMAL_L27E	coord: 124..135
IPR041991	Eukaryotic Ribosomal Protein L27, KOW domain	CDD	cd06090	KOW_RPL27	coord: 6..88 e-value: 2.01197E-40 score: 128.07
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 2..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020870.1	Tan0020870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome