Tan0020843 (gene) Snake gourd v1

Overview
NameTan0020843
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCyclin
LocationLG06: 53627144 .. 53628606 (-)
RNA-Seq ExpressionTan0020843
SyntenyTan0020843
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCCATATCTTATTTCTTGATTTCGATCCCTTTCCTCTTGGCTTCCACCCACCTTCCAAAACTCCAATCTAATCCCCCATATAAATCCCTCCATTTCTATCTTCCAAAAAAAAACCCACCACAATTATTAAAACACTCTTTTAAAAAAAACCCAATTCAATGGCAATTTCTCCAAGAAGGCTTCGATCTGATTTGTACTCATATTCCTACGATGAGTGTTCAGAATTTCCTTTAGTGATCGGCGTTGTTGCTTCCTTGATCGAGAGGAGTATGGTAAGAAACCATCGGATTACGAAAAACTACATGTCGATTTCTAAAGACTCGAGGTCGTCGAGGGCTCTTGTTTTCGACTGTCGTGAGGCACCCGACATGTCGATTCAGTCTTATTTGGAGAGGATTTTTCGCTACACTAAAGCTGGCCCTTCTGTTTACGTTGTTGCTTATGTTTATATTGATCGGTTTTGCCAACACAATCCTGAGTTTCGGATCAGTCATAGGAATGTTCATCGCCTTCTTATTACAACTGTCATGGTCGCTTCTAAATATGTCGAGGACATGTATGTTCACTTTCCCCCTTTTCCTTCTTTATTTTTCCCTTTTAGAGCTTTGAATTGAATTTATAAATTTATCTTGGGTTTTAAAGTTTAAGCTTTTTGGGTTTTATAGAAATTTAAATGGGGTTGTAGATTGAAGGTTTTCAAATCTTTTCAAGTCCAATAAAAAATATTTAATAATATCATGCCTATTGATTTAAATTTTTGAAATTTTTGGAGTTTGAGTATCTAAATTAATGTTATATTTATATGTGATTCTATATATTTAATTAGTTAAATAAAGATATCGGTAATTCCTGAGAGAGAGATGAGAAAAATTGTTTATGGTAAATTGTTTGGATTGAATTTTGTAGTTGAGTGATGATTTAACAAATATTTTGTATGGTTTGGAAACAGGAACTACAGAAATTCTTACTACGCAAGAGTTGGGGGATTGACAACCAAGGAGATGAACGAGCTAGAGGTGGATTTTTTGTTTATGATGGGATTCAAATGTCATGTAAATCTAAGTGTGTTTGAGAGTTATTGTTGTCATTTGGAAAGAGAAGTTAGCATTGGTGGAGGGTACCACATAGAGAGGACATTACGATGTGCAGAAGAGTTGAAATCTAAACACAACCAACAAACTACATTTAATCAAATGGCTCGTATTATGTTGTAGATATCAAACCTAATTAATTAATGACTAAATCTATACACACTTTGCTTTTCTTTTCCCTTAGCTGCTTTTTTTTTTCTTTTCTTTTGCACAGTTATATGCTAGCCTATATATTAAATTGTGATGGTTCCTCTTGAATCATTGTTACATTGCCGACACTTGCTTAATGTTTACTCATGTAATACAAAGGACGTTTTTTTTAATCATATATTTCCCTATGCTGATTCATAGTTTTTATTGGAAAGGACAA

mRNA sequence

CACCCATATCTTATTTCTTGATTTCGATCCCTTTCCTCTTGGCTTCCACCCACCTTCCAAAACTCCAATCTAATCCCCCATATAAATCCCTCCATTTCTATCTTCCAAAAAAAAACCCACCACAATTATTAAAACACTCTTTTAAAAAAAACCCAATTCAATGGCAATTTCTCCAAGAAGGCTTCGATCTGATTTGTACTCATATTCCTACGATGAGTGTTCAGAATTTCCTTTAGTGATCGGCGTTGTTGCTTCCTTGATCGAGAGGAGTATGGTAAGAAACCATCGGATTACGAAAAACTACATGTCGATTTCTAAAGACTCGAGGTCGTCGAGGGCTCTTGTTTTCGACTGTCGTGAGGCACCCGACATGTCGATTCAGTCTTATTTGGAGAGGATTTTTCGCTACACTAAAGCTGGCCCTTCTGTTTACGTTGTTGCTTATGTTTATATTGATCGGTTTTGCCAACACAATCCTGAGTTTCGGATCAGTCATAGGAATGTTCATCGCCTTCTTATTACAACTGTCATGGTCGCTTCTAAATATGTCGAGGACATGAACTACAGAAATTCTTACTACGCAAGAGTTGGGGGATTGACAACCAAGGAGATGAACGAGCTAGAGGTGGATTTTTTGTTTATGATGGGATTCAAATGTCATGTAAATCTAAGTGTGTTTGAGAGTTATTGTTGTCATTTGGAAAGAGAAGTTAGCATTGGTGGAGGGTACCACATAGAGAGGACATTACGATGTGCAGAAGAGTTGAAATCTAAACACAACCAACAAACTACATTTAATCAAATGGCTCGTATTATGTTGTAGATATCAAACCTAATTAATTAATGACTAAATCTATACACACTTTGCTTTTCTTTTCCCTTAGCTGCTTTTTTTTTTCTTTTCTTTTGCACAGTTATATGCTAGCCTATATATTAAATTGTGATGGTTCCTCTTGAATCATTGTTACATTGCCGACACTTGCTTAATGTTTACTCATGTAATACAAAGGACGTTTTTTTTAATCATATATTTCCCTATGCTGATTCATAGTTTTTATTGGAAAGGACAA

Coding sequence (CDS)

ATGGCAATTTCTCCAAGAAGGCTTCGATCTGATTTGTACTCATATTCCTACGATGAGTGTTCAGAATTTCCTTTAGTGATCGGCGTTGTTGCTTCCTTGATCGAGAGGAGTATGGTAAGAAACCATCGGATTACGAAAAACTACATGTCGATTTCTAAAGACTCGAGGTCGTCGAGGGCTCTTGTTTTCGACTGTCGTGAGGCACCCGACATGTCGATTCAGTCTTATTTGGAGAGGATTTTTCGCTACACTAAAGCTGGCCCTTCTGTTTACGTTGTTGCTTATGTTTATATTGATCGGTTTTGCCAACACAATCCTGAGTTTCGGATCAGTCATAGGAATGTTCATCGCCTTCTTATTACAACTGTCATGGTCGCTTCTAAATATGTCGAGGACATGAACTACAGAAATTCTTACTACGCAAGAGTTGGGGGATTGACAACCAAGGAGATGAACGAGCTAGAGGTGGATTTTTTGTTTATGATGGGATTCAAATGTCATGTAAATCTAAGTGTGTTTGAGAGTTATTGTTGTCATTTGGAAAGAGAAGTTAGCATTGGTGGAGGGTACCACATAGAGAGGACATTACGATGTGCAGAAGAGTTGAAATCTAAACACAACCAACAAACTACATTTAATCAAATGGCTCGTATTATGTTGTAG

Protein sequence

MAISPRRLRSDLYSYSYDECSEFPLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSRALVFDCREAPDMSIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHLEREVSIGGGYHIERTLRCAEELKSKHNQQTTFNQMARIML
Homology
BLAST of Tan0020843 vs. ExPASy Swiss-Prot
Match: Q9SHD3 (Cyclin-U2-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU2-1 PE=1 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.0e-83
Identity = 155/225 (68.89%), Postives = 185/225 (82.22%), Query Frame = 0

Query: 1   MAISPRRLRSDLYSYSY-DECSEFPLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSR 60
           +AISPR+LRSDLYSYSY D+ +  PLVI V++SLIER++ RN RI+++Y    K      
Sbjct: 4   LAISPRKLRSDLYSYSYQDDSNTVPLVISVLSSLIERTLARNERISRSYGGFGK------ 63

Query: 61  ALVFDCREAPDMSIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLL 120
             VFDCRE PDM+IQSYLERIFRYTKAGPSVYVVAYVYIDRFCQ+N  FRIS  NVHRLL
Sbjct: 64  TRVFDCREIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQNNQGFRISLTNVHRLL 123

Query: 121 ITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCH 180
           ITT+M+ASKYVEDMNY+NSY+A+VGGL T+++N LE++FLF+MGFK HVN+SVFESYCCH
Sbjct: 124 ITTIMIASKYVEDMNYKNSYFAKVGGLETEDLNNLELEFLFLMGFKLHVNVSVFESYCCH 183

Query: 181 LEREVSIGGGYHIERTLRCAEELKSKHNQQTT----FNQMARIML 221
           LEREVSIGGGY IE+ LRCAEE+KS+   Q       +Q +RIML
Sbjct: 184 LEREVSIGGGYQIEKALRCAEEIKSRQIVQDPKHHHHHQFSRIML 222

BLAST of Tan0020843 vs. ExPASy Swiss-Prot
Match: Q9M205 (Cyclin-U2-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU2-2 PE=1 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 6.6e-82
Identity = 150/228 (65.79%), Postives = 184/228 (80.70%), Query Frame = 0

Query: 1   MAISPRRLRSDLYSYSYDECSEFPLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSRA 60
           + ISPR+LRSDLYSYSY   S+ PLVI V++SLI+R++ RN RI++   ++       + 
Sbjct: 7   LTISPRKLRSDLYSYSYQNNSKTPLVISVLSSLIDRTLTRNERISRR--ALPSSGAGGKT 66

Query: 61  LVFDCREAPDMSIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLI 120
            +FDCRE PDM+IQSYL RIFRYTKAGPSVYVVAYVYIDRFCQ NP FRIS  NVHRLLI
Sbjct: 67  QIFDCREIPDMTIQSYLGRIFRYTKAGPSVYVVAYVYIDRFCQTNPGFRISLTNVHRLLI 126

Query: 121 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHL 180
           TT+M+ASKYVED+NYRNSY+A+VGGL T+++N+LE++FLF+MGFK HVN+SVFESYCCHL
Sbjct: 127 TTIMIASKYVEDLNYRNSYFAKVGGLETEDLNKLELEFLFLMGFKLHVNVSVFESYCCHL 186

Query: 181 EREVSIGGGYHIERTLRCAEELKS--------KHNQQTTFNQMARIML 221
           EREVS GGGY IE+ LRCAEE+KS        KH+     +Q+ARI+L
Sbjct: 187 EREVSFGGGYQIEKALRCAEEIKSRQMIIQDPKHHHH--HHQLARILL 230

BLAST of Tan0020843 vs. ExPASy Swiss-Prot
Match: Q7FAT5 (Cyclin-P2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP2-1 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.0e-43
Identity = 90/189 (47.62%), Postives = 125/189 (66.14%), Query Frame = 0

Query: 24  PLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSRALVFDCREAPDMSIQSYLERIFRY 83
           P+V+ V+ASL+ER + RN R   +  + +    + RA  FD     DMS+ ++LER  RY
Sbjct: 26  PVVVSVLASLLERHIARNER---DQAAAADGEAARRARAFDSGTVLDMSLHAFLERFSRY 85

Query: 84  TKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLITTVMVASKYVEDMNYRNSYYARV 143
               P VYVVAY Y+DR  +     R+   N  RLL T ++VASK+VED NY+NSY+A V
Sbjct: 86  ANVSPQVYVVAYAYLDRL-RRGDGVRVVSANAQRLLTTAILVASKFVEDRNYKNSYFAAV 145

Query: 144 GGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHLEREVSIGGGYHIERTLR----CA 203
           GGLT  E++ LE+DFLF+M F+ +V++SVF+SYC HLEREVS GGGY +ER L+    C+
Sbjct: 146 GGLTAAELSSLELDFLFLMQFRLNVSVSVFQSYCRHLEREVSYGGGYQVERCLKKALVCS 205

Query: 204 EELKSKHNQ 209
            E +++  Q
Sbjct: 206 GEAQAQQRQ 210

BLAST of Tan0020843 vs. ExPASy Swiss-Prot
Match: O80513 (Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 7.9e-35
Identity = 74/161 (45.96%), Postives = 113/161 (70.19%), Query Frame = 0

Query: 26  VIGVVASLIERSMVRNHRITKNYMSISKDSRSSRALVFDCREAPDMSIQSYLERIFRYTK 85
           +I  ++SL+ER +  ++ +T+        ++S R  VF     P ++IQSYLERIF+Y  
Sbjct: 13  LIAFLSSLLER-VAESNDLTRRVA-----TQSQRVSVFHGLSRPTITIQSYLERIFKYAN 72

Query: 86  AGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLITTVMVASKYVEDMNYRNSYYARVGG 145
             PS +VVAYVY+DRF    P   I+  NVHRLLIT+VMVA+K+++D+ Y N+YYA+VGG
Sbjct: 73  CSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAYYAKVGG 132

Query: 146 LTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHLEREVSI 187
           ++TKEMN LE+DFLF +GF+ +V  + F +Y  +L++E+++
Sbjct: 133 ISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTL 167

BLAST of Tan0020843 vs. ExPASy Swiss-Prot
Match: Q9LY16 (Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 69/161 (42.86%), Postives = 107/161 (66.46%), Query Frame = 0

Query: 24  PLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSRALVFDCREAPDMSIQSYLERIFRY 83
           P VI  ++SL++R    N  +++ +          R   F+    P +SI+SY+ERIF+Y
Sbjct: 21  PNVITAMSSLLQRVSETNDDLSRPF------REHKRISAFNAVTKPSISIRSYMERIFKY 80

Query: 84  TKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLITTVMVASKYVEDMNYRNSYYARV 143
                S Y+VAY+Y+DRF Q  P   I   NVHRL+IT+V+V++K+++D+ Y N++YA+V
Sbjct: 81  ADCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKV 140

Query: 144 GGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHLEREV 185
           GG+TT+EMN LE+DFLF +GF+ +V +S +  YC  L+RE+
Sbjct: 141 GGITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREM 175

BLAST of Tan0020843 vs. NCBI nr
Match: XP_023006659.1 (cyclin-U2-2 [Cucurbita maxima])

HSP 1 Score: 383.6 bits (984), Expect = 1.1e-102
Identity = 192/220 (87.27%), Postives = 202/220 (91.82%), Query Frame = 0

Query: 1   MAISPRRLRSDLYSYSYDECSEFPLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSRA 60
           + ISPR LRSD+YSYSY+E S  PLVIGVVASLIERSM RNHRI KN MS+ +DSR SRA
Sbjct: 3   LPISPRSLRSDVYSYSYEEGSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSR-SRA 62

Query: 61  LVFDCREAPDMSIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLI 120
           LVF+CREAPDMSIQ YLERIFRYTK GPSVYVVAYVYIDRFCQ NP FRIS RNVHRLLI
Sbjct: 63  LVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRISLRNVHRLLI 122

Query: 121 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHL 180
           TTVMVASKYVEDMNYRNSYYARVGGLTTKEMN+LE+DFLFMMGFKCHVNLSVFESYCCHL
Sbjct: 123 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCHL 182

Query: 181 EREVSIGGGYHIERTLRCAEELKSKHNQQTTFNQMARIML 221
           EREVSIGGGYHIERTLRCAEELKSK +QQ +FNQMARI L
Sbjct: 183 EREVSIGGGYHIERTLRCAEELKSKQSQQASFNQMARITL 221

BLAST of Tan0020843 vs. NCBI nr
Match: XP_023548344.1 (cyclin-U2-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 383.3 bits (983), Expect = 1.5e-102
Identity = 191/220 (86.82%), Postives = 203/220 (92.27%), Query Frame = 0

Query: 1   MAISPRRLRSDLYSYSYDECSEFPLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSRA 60
           + ISPR LRSD+YSYSY+E S  PLVIGVVASLIERSM RNHRI KN MS+ +DSR SRA
Sbjct: 68  LPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSR-SRA 127

Query: 61  LVFDCREAPDMSIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLI 120
           LVF+CREAPDMSIQSYLERIFRYTK GPSVYVVAYVYIDRFCQ NP FRI+ RNVHRLLI
Sbjct: 128 LVFECREAPDMSIQSYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLI 187

Query: 121 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHL 180
           TTVMVASKYVEDMNYRNSYYARVGGLTTKEMN+LE+DFLFMMGFKCHVN+SVFESYCCHL
Sbjct: 188 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNVSVFESYCCHL 247

Query: 181 EREVSIGGGYHIERTLRCAEELKSKHNQQTTFNQMARIML 221
           EREVSIGGGYHIERTLRCAEELKSK +QQ +FNQMARI L
Sbjct: 248 EREVSIGGGYHIERTLRCAEELKSKQSQQASFNQMARITL 286

BLAST of Tan0020843 vs. NCBI nr
Match: KAG7013796.1 (Cyclin-U2-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 382.5 bits (981), Expect = 2.5e-102
Identity = 191/220 (86.82%), Postives = 202/220 (91.82%), Query Frame = 0

Query: 1   MAISPRRLRSDLYSYSYDECSEFPLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSRA 60
           + ISPR LRSD+YSYSY+E S  PLVIGVVASLIERSM RNHRI KN MS+ +DSR SRA
Sbjct: 3   LPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSR-SRA 62

Query: 61  LVFDCREAPDMSIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLI 120
           LVF+CREAPDMSIQ YLERIFRYTK GPSVYVVAYVYIDRFCQ NP FRI+ RNVHRLLI
Sbjct: 63  LVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLI 122

Query: 121 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHL 180
           TTVMVASKYVEDMNYRNSYYARVGGLTTKEMN+LE+DFLFMMGFKCHVNLSVFESYCCHL
Sbjct: 123 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCHL 182

Query: 181 EREVSIGGGYHIERTLRCAEELKSKHNQQTTFNQMARIML 221
           EREVSIGGGYHIERTLRCAEELKSK +QQ +FNQMARI L
Sbjct: 183 EREVSIGGGYHIERTLRCAEELKSKQSQQASFNQMARITL 221

BLAST of Tan0020843 vs. NCBI nr
Match: XP_038875511.1 (cyclin-U2-1 [Benincasa hispida])

HSP 1 Score: 377.5 bits (968), Expect = 8.0e-101
Identity = 189/219 (86.30%), Postives = 200/219 (91.32%), Query Frame = 0

Query: 3   ISPRRLRSDLYSYSYDECSEFPLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSRA-L 62
           ISPR+LRSDLYSY+ D  S+ PLVI VVASLIERSM RNHRI KNYMSI +D  SSRA +
Sbjct: 9   ISPRKLRSDLYSYNED--SKIPLVISVVASLIERSMARNHRIAKNYMSICRDHSSSRAGV 68

Query: 63  VFDCREAPDMSIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLIT 122
           VFDC EAPDMSIQ YLERIFRYT+A P VYVVAYVYIDRFCQ NP FRI+ RNVHRLLIT
Sbjct: 69  VFDCHEAPDMSIQCYLERIFRYTRAAPCVYVVAYVYIDRFCQQNPSFRITLRNVHRLLIT 128

Query: 123 TVMVASKYVEDMNYRNSYYARVGGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHLE 182
           TVMVASKYVEDMNYRNSYYARVGGLTTKEMN+LEVDFLF+MGFKCHVNLSVFESYCCHLE
Sbjct: 129 TVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLEVDFLFLMGFKCHVNLSVFESYCCHLE 188

Query: 183 REVSIGGGYHIERTLRCAEELKSKHNQQTTFNQMARIML 221
           REVSIGGGYHIE+TLRCAEELKSK NQQTT+NQMARIML
Sbjct: 189 REVSIGGGYHIEKTLRCAEELKSKQNQQTTYNQMARIML 225

BLAST of Tan0020843 vs. NCBI nr
Match: XP_022158574.1 (cyclin-U2-1-like [Momordica charantia])

HSP 1 Score: 363.2 bits (931), Expect = 1.6e-96
Identity = 185/220 (84.09%), Postives = 198/220 (90.00%), Query Frame = 0

Query: 3   ISPRRLRSDLYSYSYDECSEFPLVIGVVASLIERSMVRNHRITKNYMSISK-DSRSSRAL 62
           ISPR+LRSDLYSYSY + SE PLVI V++SLIERSM RNHRI+KNY + SK  SR   AL
Sbjct: 19  ISPRKLRSDLYSYSYGQDSETPLVITVLSSLIERSMARNHRISKNYCTKSKWASRRHSAL 78

Query: 63  VFDCREAPDMSIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLIT 122
           VFD  EAPDMSIQSYLERIF YT+AGPSVYVVAYVYIDRFCQ NPEFRI+ RNVHRLLIT
Sbjct: 79  VFDSGEAPDMSIQSYLERIFCYTRAGPSVYVVAYVYIDRFCQLNPEFRITLRNVHRLLIT 138

Query: 123 TVMVASKYVEDMNYRNSYYARVGGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHLE 182
           T+MVASKYVEDMNYRNSY+ARVGGLT KEMN+LE+DFLFMMGFKCHVN+SVFESYCCHLE
Sbjct: 139 TIMVASKYVEDMNYRNSYFARVGGLTRKEMNQLELDFLFMMGFKCHVNVSVFESYCCHLE 198

Query: 183 REVSIGGGYHIERTLRCAEEL-KSKHNQQTTFNQMARIML 221
           REVSIGGGYHIERTLRCAEEL  SK NQQTTFNQM RIML
Sbjct: 199 REVSIGGGYHIERTLRCAEELNNSKQNQQTTFNQMPRIML 238

BLAST of Tan0020843 vs. ExPASy TrEMBL
Match: A0A6J1L2S6 (Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111499317 PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 5.4e-103
Identity = 192/220 (87.27%), Postives = 202/220 (91.82%), Query Frame = 0

Query: 1   MAISPRRLRSDLYSYSYDECSEFPLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSRA 60
           + ISPR LRSD+YSYSY+E S  PLVIGVVASLIERSM RNHRI KN MS+ +DSR SRA
Sbjct: 3   LPISPRSLRSDVYSYSYEEGSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSR-SRA 62

Query: 61  LVFDCREAPDMSIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLI 120
           LVF+CREAPDMSIQ YLERIFRYTK GPSVYVVAYVYIDRFCQ NP FRIS RNVHRLLI
Sbjct: 63  LVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRISLRNVHRLLI 122

Query: 121 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHL 180
           TTVMVASKYVEDMNYRNSYYARVGGLTTKEMN+LE+DFLFMMGFKCHVNLSVFESYCCHL
Sbjct: 123 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLELDFLFMMGFKCHVNLSVFESYCCHL 182

Query: 181 EREVSIGGGYHIERTLRCAEELKSKHNQQTTFNQMARIML 221
           EREVSIGGGYHIERTLRCAEELKSK +QQ +FNQMARI L
Sbjct: 183 EREVSIGGGYHIERTLRCAEELKSKQSQQASFNQMARITL 221

BLAST of Tan0020843 vs. ExPASy TrEMBL
Match: A0A6J1DZT6 (Cyclin OS=Momordica charantia OX=3673 GN=LOC111025028 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 7.5e-97
Identity = 185/220 (84.09%), Postives = 198/220 (90.00%), Query Frame = 0

Query: 3   ISPRRLRSDLYSYSYDECSEFPLVIGVVASLIERSMVRNHRITKNYMSISK-DSRSSRAL 62
           ISPR+LRSDLYSYSY + SE PLVI V++SLIERSM RNHRI+KNY + SK  SR   AL
Sbjct: 19  ISPRKLRSDLYSYSYGQDSETPLVITVLSSLIERSMARNHRISKNYCTKSKWASRRHSAL 78

Query: 63  VFDCREAPDMSIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLIT 122
           VFD  EAPDMSIQSYLERIF YT+AGPSVYVVAYVYIDRFCQ NPEFRI+ RNVHRLLIT
Sbjct: 79  VFDSGEAPDMSIQSYLERIFCYTRAGPSVYVVAYVYIDRFCQLNPEFRITLRNVHRLLIT 138

Query: 123 TVMVASKYVEDMNYRNSYYARVGGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHLE 182
           T+MVASKYVEDMNYRNSY+ARVGGLT KEMN+LE+DFLFMMGFKCHVN+SVFESYCCHLE
Sbjct: 139 TIMVASKYVEDMNYRNSYFARVGGLTRKEMNQLELDFLFMMGFKCHVNVSVFESYCCHLE 198

Query: 183 REVSIGGGYHIERTLRCAEEL-KSKHNQQTTFNQMARIML 221
           REVSIGGGYHIERTLRCAEEL  SK NQQTTFNQM RIML
Sbjct: 199 REVSIGGGYHIERTLRCAEELNNSKQNQQTTFNQMPRIML 238

BLAST of Tan0020843 vs. ExPASy TrEMBL
Match: A0A1S3CAV0 (Cyclin OS=Cucumis melo OX=3656 GN=LOC103498771 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.9e-96
Identity = 186/221 (84.16%), Postives = 197/221 (89.14%), Query Frame = 0

Query: 3   ISPRRLRSDLYSYSYDE-CSEFPLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSRAL 62
           ISPR+LRSDLYSYSY E  S+ PLVI VVASLIER+M RNHRI +NYMS      S  A+
Sbjct: 12  ISPRKLRSDLYSYSYSEDYSKIPLVISVVASLIERNMARNHRIARNYMS------SKGAV 71

Query: 63  VFDCR-EAPDMSIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLI 122
           VFDCR EAPDMSIQ YLERIFRYTKA PSVYVVAYVYIDRFCQ NP FRI+ RNVHRLLI
Sbjct: 72  VFDCRDEAPDMSIQRYLERIFRYTKAAPSVYVVAYVYIDRFCQQNPSFRITLRNVHRLLI 131

Query: 123 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHL 182
           TTVMVASKYVEDMNYRNSYYARVGGLTTKEMN+LE+DFLF+M FKCHVNLSVFESYCCHL
Sbjct: 132 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLEMDFLFLMKFKCHVNLSVFESYCCHL 191

Query: 183 EREVSIGGGYHIERTLRCAEELKSKHNQQTTF-NQMARIML 221
           EREVSIGGGYHIERTLRCAEELKSK NQQTT+ NQ+ARIML
Sbjct: 192 EREVSIGGGYHIERTLRCAEELKSKQNQQTTYINQIARIML 226

BLAST of Tan0020843 vs. ExPASy TrEMBL
Match: A0A0A0KAQ9 (Cyclin OS=Cucumis sativus OX=3659 GN=Csa_6G108560 PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.0e-94
Identity = 183/221 (82.81%), Postives = 195/221 (88.24%), Query Frame = 0

Query: 3   ISPRRLRSDLYSYSYDE-CSEFPLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSRAL 62
           ISPR+LRSDLYSYS+ E  S+ PLVI VVASLIER+M RNHRI +NY S      S  A+
Sbjct: 12  ISPRKLRSDLYSYSHSEDYSKIPLVISVVASLIERNMARNHRIARNYTS------SKGAV 71

Query: 63  VFDCR-EAPDMSIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLI 122
           VFDCR EAPDMSIQ YLERIFRYTKA P VYVVAYVYIDRFCQ NP FRI+ RNVHRLLI
Sbjct: 72  VFDCRDEAPDMSIQCYLERIFRYTKAAPCVYVVAYVYIDRFCQQNPSFRITLRNVHRLLI 131

Query: 123 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHL 182
           TTVMVASKYVEDMNYRNSYYARVGGLTTKEMN+LE+DFLF+M FKCHVNLSVFESYCCHL
Sbjct: 132 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNQLEMDFLFLMRFKCHVNLSVFESYCCHL 191

Query: 183 EREVSIGGGYHIERTLRCAEELKSKHNQQTTF-NQMARIML 221
           EREVSIGGGYHIERTLRCAEELKSK NQQTT+ NQ+ARIML
Sbjct: 192 EREVSIGGGYHIERTLRCAEELKSKQNQQTTYINQIARIML 226

BLAST of Tan0020843 vs. ExPASy TrEMBL
Match: A0A1R3HGQ3 (Cyclin OS=Corchorus capsularis OX=210143 GN=CCACVL1_19460 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 8.1e-91
Identity = 169/219 (77.17%), Postives = 192/219 (87.67%), Query Frame = 0

Query: 3   ISPRRLRSDLYSYSYDECSEFPLVIGVVASLIERSMVRNHRITKN-YMSISKDSRSSRAL 62
           ISPR+LRSDLYSYSY   +  PLVI V+ASLIER+M RN RI KN   +++KDSR+    
Sbjct: 11  ISPRKLRSDLYSYSYQNDANTPLVISVLASLIERTMARNERIVKNCNWALTKDSRNR--- 70

Query: 63  VFDCREAPDMSIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLIT 122
           VFDC E PDM+IQSYLERIFRYTKAGPSVYVVAYVYIDRFCQ NP FRI+ RNVHRLLIT
Sbjct: 71  VFDCHETPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRINARNVHRLLIT 130

Query: 123 TVMVASKYVEDMNYRNSYYARVGGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHLE 182
           T+MVASKYVEDMNYRNSY+ARVGGLTT E+N LEV+FLF+MGFK HVN+SVFESYCCHLE
Sbjct: 131 TIMVASKYVEDMNYRNSYFARVGGLTTNELNNLEVEFLFLMGFKLHVNVSVFESYCCHLE 190

Query: 183 REVSIGGGYHIERTLRCAEELKSKHNQQTTFNQMARIML 221
           REVSIGGGYHIE+TLRCAEE+KS+ N++  +NQ+ARIML
Sbjct: 191 REVSIGGGYHIEKTLRCAEEIKSRQNEERRYNQIARIML 226

BLAST of Tan0020843 vs. TAIR 10
Match: AT2G45080.1 (cyclin p3;1 )

HSP 1 Score: 310.1 bits (793), Expect = 1.5e-84
Identity = 155/225 (68.89%), Postives = 185/225 (82.22%), Query Frame = 0

Query: 1   MAISPRRLRSDLYSYSY-DECSEFPLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSR 60
           +AISPR+LRSDLYSYSY D+ +  PLVI V++SLIER++ RN RI+++Y    K      
Sbjct: 4   LAISPRKLRSDLYSYSYQDDSNTVPLVISVLSSLIERTLARNERISRSYGGFGK------ 63

Query: 61  ALVFDCREAPDMSIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLL 120
             VFDCRE PDM+IQSYLERIFRYTKAGPSVYVVAYVYIDRFCQ+N  FRIS  NVHRLL
Sbjct: 64  TRVFDCREIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQNNQGFRISLTNVHRLL 123

Query: 121 ITTVMVASKYVEDMNYRNSYYARVGGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCH 180
           ITT+M+ASKYVEDMNY+NSY+A+VGGL T+++N LE++FLF+MGFK HVN+SVFESYCCH
Sbjct: 124 ITTIMIASKYVEDMNYKNSYFAKVGGLETEDLNNLELEFLFLMGFKLHVNVSVFESYCCH 183

Query: 181 LEREVSIGGGYHIERTLRCAEELKSKHNQQTT----FNQMARIML 221
           LEREVSIGGGY IE+ LRCAEE+KS+   Q       +Q +RIML
Sbjct: 184 LEREVSIGGGYQIEKALRCAEEIKSRQIVQDPKHHHHHQFSRIML 222

BLAST of Tan0020843 vs. TAIR 10
Match: AT3G60550.1 (cyclin p3;2 )

HSP 1 Score: 305.1 bits (780), Expect = 4.7e-83
Identity = 150/228 (65.79%), Postives = 184/228 (80.70%), Query Frame = 0

Query: 1   MAISPRRLRSDLYSYSYDECSEFPLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSRA 60
           + ISPR+LRSDLYSYSY   S+ PLVI V++SLI+R++ RN RI++   ++       + 
Sbjct: 7   LTISPRKLRSDLYSYSYQNNSKTPLVISVLSSLIDRTLTRNERISRR--ALPSSGAGGKT 66

Query: 61  LVFDCREAPDMSIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLI 120
            +FDCRE PDM+IQSYL RIFRYTKAGPSVYVVAYVYIDRFCQ NP FRIS  NVHRLLI
Sbjct: 67  QIFDCREIPDMTIQSYLGRIFRYTKAGPSVYVVAYVYIDRFCQTNPGFRISLTNVHRLLI 126

Query: 121 TTVMVASKYVEDMNYRNSYYARVGGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHL 180
           TT+M+ASKYVED+NYRNSY+A+VGGL T+++N+LE++FLF+MGFK HVN+SVFESYCCHL
Sbjct: 127 TTIMIASKYVEDLNYRNSYFAKVGGLETEDLNKLELEFLFLMGFKLHVNVSVFESYCCHL 186

Query: 181 EREVSIGGGYHIERTLRCAEELKS--------KHNQQTTFNQMARIML 221
           EREVS GGGY IE+ LRCAEE+KS        KH+     +Q+ARI+L
Sbjct: 187 EREVSFGGGYQIEKALRCAEEIKSRQMIIQDPKHHHH--HHQLARILL 230

BLAST of Tan0020843 vs. TAIR 10
Match: AT2G44740.1 (cyclin p4;1 )

HSP 1 Score: 148.7 bits (374), Expect = 5.6e-36
Identity = 74/161 (45.96%), Postives = 113/161 (70.19%), Query Frame = 0

Query: 26  VIGVVASLIERSMVRNHRITKNYMSISKDSRSSRALVFDCREAPDMSIQSYLERIFRYTK 85
           +I  ++SL+ER +  ++ +T+        ++S R  VF     P ++IQSYLERIF+Y  
Sbjct: 13  LIAFLSSLLER-VAESNDLTRRVA-----TQSQRVSVFHGLSRPTITIQSYLERIFKYAN 72

Query: 86  AGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLITTVMVASKYVEDMNYRNSYYARVGG 145
             PS +VVAYVY+DRF    P   I+  NVHRLLIT+VMVA+K+++D+ Y N+YYA+VGG
Sbjct: 73  CSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAYYAKVGG 132

Query: 146 LTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHLEREVSI 187
           ++TKEMN LE+DFLF +GF+ +V  + F +Y  +L++E+++
Sbjct: 133 ISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTL 167

BLAST of Tan0020843 vs. TAIR 10
Match: AT5G07450.1 (cyclin p4;3 )

HSP 1 Score: 144.8 bits (364), Expect = 8.1e-35
Identity = 69/161 (42.86%), Postives = 107/161 (66.46%), Query Frame = 0

Query: 24  PLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSRALVFDCREAPDMSIQSYLERIFRY 83
           P VI  ++SL++R    N  +++ +          R   F+    P +SI+SY+ERIF+Y
Sbjct: 21  PNVITAMSSLLQRVSETNDDLSRPF------REHKRISAFNAVTKPSISIRSYMERIFKY 80

Query: 84  TKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLITTVMVASKYVEDMNYRNSYYARV 143
                S Y+VAY+Y+DRF Q  P   I   NVHRL+IT+V+V++K+++D+ Y N++YA+V
Sbjct: 81  ADCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKV 140

Query: 144 GGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHLEREV 185
           GG+TT+EMN LE+DFLF +GF+ +V +S +  YC  L+RE+
Sbjct: 141 GGITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREM 175

BLAST of Tan0020843 vs. TAIR 10
Match: AT3G21870.1 (cyclin p2;1 )

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-34
Identity = 66/163 (40.49%), Postives = 106/163 (65.03%), Query Frame = 0

Query: 24  PLVIGVVASLIERSMVRNHRITKNYMSISKDSRSSRALVFDCREAPDMSIQSYLERIFRY 83
           P V+ +++ ++E+ + RN  + K      K   +     F    AP +SI  YLERI++Y
Sbjct: 25  PRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEA-----FHGVRAPSISIAKYLERIYKY 84

Query: 84  TKAGPSVYVVAYVYIDRFCQHNPEFRISHRNVHRLLITTVMVASKYVEDMNYRNSYYARV 143
           TK  P+ +VV YVYIDR    +P   +   NVHRLL+T VM+A+K ++D++Y N +YARV
Sbjct: 85  TKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVHYNNEFYARV 144

Query: 144 GGLTTKEMNELEVDFLFMMGFKCHVNLSVFESYCCHLEREVSI 187
           GG++  ++N++E++ LF++ F+  V+  VFESYC HLE+E+ +
Sbjct: 145 GGVSNADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEMQL 182

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SHD32.0e-8368.89Cyclin-U2-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU2-1 PE=1 SV=1[more]
Q9M2056.6e-8265.79Cyclin-U2-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU2-2 PE=1 SV=1[more]
Q7FAT56.0e-4347.62Cyclin-P2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP2-1 PE=2 SV=1[more]
O805137.9e-3545.96Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1[more]
Q9LY161.1e-3342.86Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
XP_023006659.11.1e-10287.27cyclin-U2-2 [Cucurbita maxima][more]
XP_023548344.11.5e-10286.82cyclin-U2-1 [Cucurbita pepo subsp. pepo][more]
KAG7013796.12.5e-10286.82Cyclin-U2-2 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038875511.18.0e-10186.30cyclin-U2-1 [Benincasa hispida][more]
XP_022158574.11.6e-9684.09cyclin-U2-1-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1L2S65.4e-10387.27Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111499317 PE=3 SV=1[more]
A0A6J1DZT67.5e-9784.09Cyclin OS=Momordica charantia OX=3673 GN=LOC111025028 PE=3 SV=1[more]
A0A1S3CAV02.9e-9684.16Cyclin OS=Cucumis melo OX=3656 GN=LOC103498771 PE=3 SV=1[more]
A0A0A0KAQ92.0e-9482.81Cyclin OS=Cucumis sativus OX=3659 GN=Csa_6G108560 PE=3 SV=1[more]
A0A1R3HGQ38.1e-9177.17Cyclin OS=Corchorus capsularis OX=210143 GN=CCACVL1_19460 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G45080.11.5e-8468.89cyclin p3;1 [more]
AT3G60550.14.7e-8365.79cyclin p3;2 [more]
AT2G44740.15.6e-3645.96cyclin p4;1 [more]
AT5G07450.18.1e-3542.86cyclin p4;3 [more]
AT3G21870.12.4e-3440.49cyclin p2;1 [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013922Cyclin PHO80-likePFAMPF08613Cyclincoord: 55..165
e-value: 9.3E-33
score: 113.9
IPR012389Cyclin P/UPIRSFPIRSF027110PREGcoord: 2..219
e-value: 1.9E-67
score: 225.1
NoneNo IPR availableGENE3D1.10.472.10coord: 13..219
e-value: 1.7E-50
score: 173.6
NoneNo IPR availablePANTHERPTHR15615:SF105CYCLINcoord: 1..220
NoneNo IPR availablePANTHERPTHR15615UNCHARACTERIZEDcoord: 1..220
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 75..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0020843.1Tan0020843.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
molecular_function GO:0019901 protein kinase binding