Tan0020812 (gene) Snake gourd v1

Overview


Name	Tan0020812
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	cytochrome c oxidase subunit 5b-2, mitochondrial-like
Location	LG04: 85342722 .. 85346544 (-)
RNA-Seq Expression	Tan0020812
Synteny	Tan0020812

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGTGCGAAATCATTTTGCTGTACCCCCAACCATCGCCACCTCCTCTTGACCAGTTCCAGTTCCGCCTCTCTCCCATTTCCAAAAGGCGTAGAGAAGCTCAAGGCAAGGGCGAGAGACTGAAGAAACAGAAAGCCAAATTCGCCGTCGAAGCGGTGCGACCTGAGATCATAGCCGGAGAATTCACCGATTTCGATCTACGATGTGGAGGAGATTGTTCTCTTCGCAGCTCAAAGCCCTAAAATATCTTCCTTCATCATCGACGCCTGCATCCGCTCCGTTGGGGTGCATTTCTCAAGCTTCTCGACTCGCTGCTGCTTCTTCTCATGTTTCTCCTTCCCCCTCCGTCTCGCTCTTTGCTCGACATTACGCCTCGGATTCTGGTAGATCTTGCTGTTTTTCTTCGGATTTTATTGTCTCTGTAATTGTATATGTATGAATCTATGATATCAGCCTGAATGTGGAAATATGAAATTAGTCTCATGTGGTTGTTAATCTATTAGAATGTATACGCGTGGATTGTTATGTGTTGTGCAGTCTATGTCATTGTATGTGTGAATCTATGATATGTGTGCGAAACTGCGAATGTGGAATTGGTCTCGTGTGATTATTAATCGATTAGAATGTATGCGTGTGGATTGTTAAGTGTTTGGCAGTCTGTGAATTTATAATATGAGCGCGAATGTGGCTTTGATCTCGTGTGGTTGTTTGTTAGATTTATTTTTTAATGTAGCTGATACTGGTCCGAAGAAGAAGGTTGAGGATGTAATGCCAATCGCAACCGGGCACGAGCGTGAAGAGCTTGAAGCTTCGCTTGAGGTGAAATTTCTCCTATTTCTTGAATTCTTGCTTACCTGGATCTCTTTCCGTTGCGTGCTTTTTTTTTTCCCCTCCCTTATTTGATGTTGTGCTAAAAAGTAGGTTGAAATTTATGCCTTAATTGATCGTTTCTTTTTTTGTTTTCATTTTCATTTTCATTTTCATACTGAGTTGGTATGGTAATTTCAGTCAGGTTAAAACTTATGGTTGACTGGTTCATGTTAATATTTTGTTAGGCTGGCCGCTTATGTATTTTTCATTTTTCATTCTGGACGTGAGTCTCATTTCAATTGGTTTAATGTTTGCAGGGAAAAGACATCCTTGATATAAACCATCCTGTTGGTCCTTTTGGAACTAAGGTTGGTGTAGTTTGCGATTAATTTTATCTTCACTTGTTTTGACTGTCGGAAGTAACTCAGATGCTTTAGCTTTATTCAAAGTTCATTCCATGTAGATTTCAAGGCATGACGAGATAGCAATATTTGTTGCTTTTACTTTCGCTTGAATTTAACCGTTTTGTTATGCTATCATCTCTGGTTAAACTATTTCATTGAGATCTCAGTCTCTCAAAATATTTTCCGGCTGGTTGTTTTGAATTTGGGTTTCTAGTTCTTTTTCCCTTCCTTCCTTCTCCTGATTATCCTTGTCATTTATCTTTCTTTCGTGCTTCATGGTGTGTCATAATTTTGACTTTGGGAGGAATTCTTTCCTCTTTACCAAGGAGATGACAGAAAACCTGTCCAATTGGTTTGAATTAGAAAAGAAGTGAAAATGCTGAATTCTTTGACTTTGCGCTACATTTAGAAGCAAGAAAATGTGCAAGTTCCTCAATATCTATCTTACTTCTAGTTCTACTAAGATTCTATTGTTCTGCACCAGCATACTAACCTAAATCCAGTCTCGAAATAAGGTTATTCAAAGAATCTTGGTTTGAAAGTTTTGTGCTGTGGAAGGTCATGCTTGTTCTGGCCTTCAAAAACTGTGCTCTTTTGTTCCCTTTCTCTGAATTCAAAGAATCTTGGTTCCTTTATTAAGTTTCTTTTTAGTTTGTACCTTAGTGTTCATTTTGTATCCTATGACTTTGACAATTCACCTTTATGTTTTTTTTATCAAAAAACCATTCACTTTTATGTGGTAATTGATTATCCGATCAGTTGTGTAATTATCCAAGGCTTCACTTTTTCTTCAATGAAGCCTTGGATAATCAGTTGCTCTTTATAGTGTCTGTGCTTCACATGGAAATTCTGTGTTAGTGCATGTGAATGAGAAGGAATTTTCTTGCATGACTTATTTCTTGGAGAATTCTTAATACTTTTTATTTCTTTAGGAGGAACCTGCTGTTATCAAATCATATTATGACGAAAGATTAGTTGGATGCCCTGGAGGTGAAGGCGGTGGGTACTTGCAATCTCTTCTTTTCCATGTTTTTTCATAAATTTTGTGCAAGTCTGACAAAATTTTATACTAGGAAAGTTTTGTGTTCTTCAATTACACGAGAATTTCTGTTTTACTTCTGTTGCTTTCATTCTAATTGTAGAGGATGAGCATGATGTTGTATGGTTTCGGCTGAGGAAAGACGTGCCGCATGAATGTCCTGTGTGCTCACAGTACTTTGTGGTGAGAATTTATTTTAAATTATTATGTTAAGTTGGCATGATATGAAATGCTGGATTTTTTTTTTTTTTTAAAAACTCTGGAACCTTACTCTGAGAAGAGCTTCGCGAGGAGGGAACTAACACCGCCAGATCCCAAATTTCTTGCCACTTTTTACCTTAACCTTGAAAAACTCTTATGTTTCTTTCCAACAAAAACTGTCATTTGAGGGAATGACATACTAGTTTTTTTTTTTTTTTTCCTTTTTTTTTAAAGAAACAATGTCATTGATGTGAAAATACTAAAATTCAATACCATGACTGTGACACAATAGTGAAAATGCTAAAAATTTAATACCATGACTGCAAAATGTTTTTAACTAATTTTGCAAATGTTTTTAACTAATTTTGCAAATGTTTTTAAATTTCTTTTATGATTTTTGCCTACCCAAAAATGCTTCGATTGAAAGCATGCTGTTTGAGAAATAAATCATTAATATTCTCTTAAAAAATGTATATATAGAAAGTGTTCCACTTAAAAAACCTACTCTAACTTAGCCTTTGCAATATAGCTTATTCACTACGTATAACAAAATATGCAATCTAAGGTTTAGACTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCATGTTATCCTACTTTCTCCATTGATAGGATGGAGGCATTGGTGTTTAAAATTACTTATTGAGTTGCAAACTTTTCCTAATTGTAATTTGTGTTTGCAGCTGGAAGTCGTGGGACCTGGAGGATCGCCAGATGGTTATGGAAACGGCGATCATCACCATTGATTGAAACCATGCACTTTTCGAGAATAAACCTCGGTTTTTAGAAGAGACAGATTTCACAATATGCTGCAGTTCTTATTTAAAGCTGTGTTTTAGTTTTGTTATCTACTGGTCCTTGTTTTTGCAGTTGTTCCTTCAGCAACAACAGGAATCTGAGTTTTTTCCAAGTCAGTTAGACACTGGCAAGTCATCTGCTAGAAGTACGGATTTTTAAAGCTTTTCTTCTATGCATTTCCAAATAATTGGAGGCTTCTCAATTCTTTTCCATTGCCTTGCAGTACAAAACCCATTGATCTTAGAAAATAATTTCAAGAACTTGCGAAAATGAACACATTTTAGGAAGTGTTAAATGACTGTACTGAAGTGGTTTTAGGTACAATTCCTTGCCATTTCTATTGCAAATCTAAAATTTTGCCTACTTGCCCGTTGCATTTTGTAATATTTTTTCATAGCCCATTTTGGAGATCAGACCTCTTTTCATTGTGGTGCTGTAATTCTTCTCTCGTGATTCATTTAGAAAACCTTGTGATGCTGCTTTGATTAGTTTGAAACAGGTGGCTGAAAGTTAATAATATGTTGGATGAATTTGAA

mRNA sequence

CTCGTGCGAAATCATTTTGCTGTACCCCCAACCATCGCCACCTCCTCTTGACCAGTTCCAGTTCCGCCTCTCTCCCATTTCCAAAAGGCGTAGAGAAGCTCAAGGCAAGGGCGAGAGACTGAAGAAACAGAAAGCCAAATTCGCCGTCGAAGCGGTGCGACCTGAGATCATAGCCGGAGAATTCACCGATTTCGATCTACGATGTGGAGGAGATTGTTCTCTTCGCAGCTCAAAGCCCTAAAATATCTTCCTTCATCATCGACGCCTGCATCCGCTCCGTTGGGGTGCATTTCTCAAGCTTCTCGACTCGCTGCTGCTTCTTCTCATGTTTCTCCTTCCCCCTCCGTCTCGCTCTTTGCTCGACATTACGCCTCGGATTCTGCTGATACTGGTCCGAAGAAGAAGGTTGAGGATGTAATGCCAATCGCAACCGGGCACGAGCGTGAAGAGCTTGAAGCTTCGCTTGAGGGAAAAGACATCCTTGATATAAACCATCCTGTTGGTCCTTTTGGAACTAAGGAGGAACCTGCTGTTATCAAATCATATTATGACGAAAGATTAGTTGGATGCCCTGGAGGTGAAGGCGAGGATGAGCATGATGTTGTATGGTTTCGGCTGAGGAAAGACGTGCCGCATGAATGTCCTGTGTGCTCACAGTACTTTGTGCTGGAAGTCGTGGGACCTGGAGGATCGCCAGATGGTTATGGAAACGGCGATCATCACCATTGATTGAAACCATGCACTTTTCGAGAATAAACCTCGGTTTTTAGAAGAGACAGATTTCACAATATGCTGCAGTTCTTATTTAAAGCTGTGTTTTAGTTTTGTTATCTACTGGTCCTTGTTTTTGCAGTTGTTCCTTCAGCAACAACAGGAATCTGAGTTTTTTCCAAGTCAGTTAGACACTGGCAAGTCATCTGCTAGAAGTACGGATTTTTAAAGCTTTTCTTCTATGCATTTCCAAATAATTGGAGGCTTCTCAATTCTTTTCCATTGCCTTGCAGTACAAAACCCATTGATCTTAGAAAATAATTTCAAGAACTTGCGAAAATGAACACATTTTAGGAAGTGTTAAATGACTGTACTGAAGTGGTTTTAGGTACAATTCCTTGCCATTTCTATTGCAAATCTAAAATTTTGCCTACTTGCCCGTTGCATTTTGTAATATTTTTTCATAGCCCATTTTGGAGATCAGACCTCTTTTCATTGTGGTGCTGTAATTCTTCTCTCGTGATTCATTTAGAAAACCTTGTGATGCTGCTTTGATTAGTTTGAAACAGGTGGCTGAAAGTTAATAATATGTTGGATGAATTTGAA

Coding sequence (CDS)

ATGTGGAGGAGATTGTTCTCTTCGCAGCTCAAAGCCCTAAAATATCTTCCTTCATCATCGACGCCTGCATCCGCTCCGTTGGGGTGCATTTCTCAAGCTTCTCGACTCGCTGCTGCTTCTTCTCATGTTTCTCCTTCCCCCTCCGTCTCGCTCTTTGCTCGACATTACGCCTCGGATTCTGCTGATACTGGTCCGAAGAAGAAGGTTGAGGATGTAATGCCAATCGCAACCGGGCACGAGCGTGAAGAGCTTGAAGCTTCGCTTGAGGGAAAAGACATCCTTGATATAAACCATCCTGTTGGTCCTTTTGGAACTAAGGAGGAACCTGCTGTTATCAAATCATATTATGACGAAAGATTAGTTGGATGCCCTGGAGGTGAAGGCGAGGATGAGCATGATGTTGTATGGTTTCGGCTGAGGAAAGACGTGCCGCATGAATGTCCTGTGTGCTCACAGTACTTTGTGCTGGAAGTCGTGGGACCTGGAGGATCGCCAGATGGTTATGGAAACGGCGATCATCACCATTGA

Protein sequence

MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASRLAAASSHVSPSPSVSLFARHYASDSADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGDHHH

Homology

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BLAST of Tan0020812 vs. ExPASy Swiss-Prot
Match: Q9LW15 (Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX5B-1 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-52
Identity = 109/182 (59.89%), Postives = 131/182 (71.98%), Query Frame = 0


Query: 1   MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASR-----LAAASSHVSPSPSVSLFARH 60
           MWRR+ SSQLK L    ++   A++P   I+  +R     LAA  S +S S  V    R 
Sbjct: 1   MWRRIVSSQLKTL----AADVVAASPRRSIAATTRPVGFYLAANRSAISASSFV--IPRR 60

Query: 61  YASDSADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSY 120
           ++SDS +T   KKVEDVMPIATGHE+EELEA LEG+ + DI+ P GPFGTKE PA++KSY
Sbjct: 61  FSSDSVETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSY 120

Query: 121 YDERLVGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGD--H 176
           YD+R+VGCPGGEGEDEHDVVWF L K    ECPVC+QYF LEVVGPGG PDG+G+ D  H
Sbjct: 121 YDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDEDDEH 176

[Close]

BLAST of Tan0020812 vs. ExPASy Swiss-Prot
Match: Q9SSB8 (Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX5B-2 PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.8e-51
Identity = 101/174 (58.05%), Postives = 128/174 (73.56%), Query Frame = 0


Query: 1   MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASRLAAASSHVSPSPSVSLFARHYASDS 60
           MWRR+ SS LK++  + S + P+      + +++ L+ ++   S     S+F+R   S +
Sbjct: 1   MWRRIVSSHLKSISAVGSCAAPSCR--HAVVESTHLSLSTRASSIPAYSSIFSRLIGSAA 60

Query: 61  ADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERL 120
           ADT  KK+VEDVMPIATGHE+EEL+A LEG+ + DI+ P GPFGTKE PAV+KSYYD R+
Sbjct: 61  ADTAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRI 120

Query: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGDHH 175
           VGCPGGEGEDEHDVVWF L K    ECPVC+QYF LEVVGPGG PDG+G+ DHH
Sbjct: 121 VGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVVGPGGPPDGHGD-DHH 171

[Close]

BLAST of Tan0020812 vs. ExPASy Swiss-Prot
Match: Q9SSS5 (Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis thaliana OX=3702 GN=At1g52710 PE=3 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-25
Identity = 54/93 (58.06%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 84  LEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLRKDV 143
           L+    G+ +LDI+HP  PFGTKE PAV++SY+D+R +GC GGEGED HDVVWF L K  
Sbjct: 4   LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63

Query: 144 PHECPVCSQYFVLEVVGPGGSPDGYGNG-DHHH 176
             ECPVCSQYF        G PDG+G+  DHHH
Sbjct: 64  SFECPVCSQYF------EHGPPDGHGDDEDHHH 90

[Close]

BLAST of Tan0020812 vs. ExPASy Swiss-Prot
Match: P00428 (Cytochrome c oxidase subunit 5B, mitochondrial OS=Bos taurus OX=9913 GN=COX5B PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-09
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 76  ATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERLVGCPGGEGEDEHDVV 135
           ATG ERE + A+ +G+D  +I  P    GTKE+P ++ S  ++R+VGC     ED   V+
Sbjct: 44  ATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCIC--EEDNSTVI 103

Query: 136 WFRLRKDVPHECPVCSQYFVL 157
           WF L K     CP C  ++ L
Sbjct: 104 WFWLHKGEAQRCPSCGTHYKL 122

[Close]

BLAST of Tan0020812 vs. ExPASy Swiss-Prot
Match: P10606 (Cytochrome c oxidase subunit 5B, mitochondrial OS=Homo sapiens OX=9606 GN=COX5B PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-09
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 76  ATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERLVGCPGGEGEDEHDVV 135
           ATG ERE + A+ +G D  ++  P G  GT+E+P ++ S  ++R+VGC     ED   VV
Sbjct: 44  ATGLEREIMLAAKKGLDPYNVLAPKGASGTREDPNLVPSISNKRIVGCIC--EEDNTSVV 103

Query: 136 WFRLRKDVPHECPVCSQYFVL 157
           WF L K     CP C  ++ L
Sbjct: 104 WFWLHKGEAQRCPRCGAHYKL 122

[Close]

BLAST of Tan0020812 vs. NCBI nr
Match: XP_022998035.1 (cytochrome c oxidase subunit 5b-2, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 160/175 (91.43%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 1   MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASRLAAASSHVSPSPSVSLFARHYASDS 60
           MWRRL SSQLKALK LPSSSTPASAPLGCISQA+RL AASS VS S SVSLFARHYASDS
Sbjct: 1   MWRRLLSSQLKALKSLPSSSTPASAPLGCISQATRL-AASSRVSHSSSVSLFARHYASDS 60

Query: 61  ADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERL 120
           ADTG KKK EDV+PI TGHEREELEASLEG+DILDINHPVGPFGTKEEPAVIKSYYDERL
Sbjct: 61  ADTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERL 120

Query: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGDHHH 176
           VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYG+ DH H
Sbjct: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 174

[Close]

BLAST of Tan0020812 vs. NCBI nr
Match: XP_023523890.1 (cytochrome c oxidase subunit 5b-2, mitochondrial-like [Cucurbita pepo subsp. pepo] >KAG6606780.1 Cytochrome c oxidase subunit 5b-2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036493.1 Cytochrome c oxidase subunit 5b-2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 160/175 (91.43%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 1   MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASRLAAASSHVSPSPSVSLFARHYASDS 60
           MWRRL SSQLKALK LPSSST ASAPLGCISQA+RL AASS VS SPSVSLFARHYASDS
Sbjct: 1   MWRRLLSSQLKALKSLPSSSTSASAPLGCISQATRL-AASSRVSHSPSVSLFARHYASDS 60

Query: 61  ADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERL 120
           ADTG KKK EDV+PI TGHEREELEASLEG+DILDINHPVGPFGTKEEPAVIKSYYDERL
Sbjct: 61  ADTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERL 120

Query: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGDHHH 176
           VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYG+ DH H
Sbjct: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 174

[Close]

BLAST of Tan0020812 vs. NCBI nr
Match: KAA0038130.1 (cytochrome c oxidase subunit 5b-2 [Cucumis melo var. makuwa] >TYK20477.1 cytochrome c oxidase subunit 5b-2 [Cucumis melo var. makuwa])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 158/175 (90.29%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 1   MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASRLAAASSHVSPSPSVSLFARHYASDS 60
           MWRRL SS LK+LK LPSSSTPASAPLGCISQA+RL AA SH+SPS +VSLFARHYASDS
Sbjct: 1   MWRRLLSSSLKSLKSLPSSSTPASAPLGCISQAARLGAA-SHLSPSSTVSLFARHYASDS 60

Query: 61  ADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERL 120
           ADTG KKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKE PAVIKSYYDER+
Sbjct: 61  ADTGLKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEAPAVIKSYYDERI 120

Query: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGDHHH 176
           VGCPGGE EDEHDVVWFRLRK VPHECPVCSQYFVLEVVGPGGSPDGYG+ DHHH
Sbjct: 121 VGCPGGEDEDEHDVVWFRLRKGVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHHH 174

[Close]

BLAST of Tan0020812 vs. NCBI nr
Match: XP_022949516.1 (cytochrome c oxidase subunit 5b-2, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 321.2 bits (822), Expect = 5.4e-84
Identity = 159/175 (90.86%), Postives = 163/175 (93.14%), Query Frame = 0


Query: 1   MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASRLAAASSHVSPSPSVSLFARHYASDS 60
           MWRRL  SQLKALK LPSSST ASAPLGCISQA+RL AASS VS SPSVSLFARHYASDS
Sbjct: 1   MWRRLLYSQLKALKSLPSSSTSASAPLGCISQATRL-AASSRVSHSPSVSLFARHYASDS 60

Query: 61  ADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERL 120
           ADTG KKK EDV+PI TGHEREELEASLEG+DILDINHPVGPFGTKEEPAVIKSYYDERL
Sbjct: 61  ADTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERL 120

Query: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGDHHH 176
           VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYG+ DH H
Sbjct: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 174

[Close]

BLAST of Tan0020812 vs. NCBI nr
Match: XP_038896495.1 (cytochrome c oxidase subunit 5b-2, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-83
Identity = 157/175 (89.71%), Postives = 163/175 (93.14%), Query Frame = 0


Query: 1   MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASRLAAASSHVSPSPSVSLFARHYASDS 60
           MWRRL SS LK+LK LPSSSTPASAPLG IS+A+R AA  SHVSPSP+VSLFA HYASDS
Sbjct: 1   MWRRLLSSPLKSLKSLPSSSTPASAPLGYISKATRRAAV-SHVSPSPAVSLFASHYASDS 60

Query: 61  ADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERL 120
           ADTG KKKVED+MPIATGHEREELEASLEGKDILDINHPVGPFGTKE PAVIKSYYDERL
Sbjct: 61  ADTGLKKKVEDIMPIATGHEREELEASLEGKDILDINHPVGPFGTKEAPAVIKSYYDERL 120

Query: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGDHHH 176
           VGCPGGEGEDEHDVVWFRLRK VPHECPVCSQYFVLEVVGPGGSPDGYG+ DHHH
Sbjct: 121 VGCPGGEGEDEHDVVWFRLRKGVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHHH 174

[Close]

BLAST of Tan0020812 vs. ExPASy TrEMBL
Match: A0A5A7T437 (Cytochrome c oxidase subunit 5b-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00500 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.3e-85
Identity = 158/175 (90.29%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 1   MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASRLAAASSHVSPSPSVSLFARHYASDS 60
           MWRRL SS LK+LK LPSSSTPASAPLGCISQA+RL AA SH+SPS +VSLFARHYASDS
Sbjct: 1   MWRRLLSSSLKSLKSLPSSSTPASAPLGCISQAARLGAA-SHLSPSSTVSLFARHYASDS 60

Query: 61  ADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERL 120
           ADTG KKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKE PAVIKSYYDER+
Sbjct: 61  ADTGLKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEAPAVIKSYYDERI 120

Query: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGDHHH 176
           VGCPGGE EDEHDVVWFRLRK VPHECPVCSQYFVLEVVGPGGSPDGYG+ DHHH
Sbjct: 121 VGCPGGEDEDEHDVVWFRLRKGVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHHH 174

[Close]

BLAST of Tan0020812 vs. ExPASy TrEMBL
Match: A0A6J1KBJ1 (cytochrome c oxidase subunit 5b-2, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111492804 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.3e-85
Identity = 160/175 (91.43%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 1   MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASRLAAASSHVSPSPSVSLFARHYASDS 60
           MWRRL SSQLKALK LPSSSTPASAPLGCISQA+RL AASS VS S SVSLFARHYASDS
Sbjct: 1   MWRRLLSSQLKALKSLPSSSTPASAPLGCISQATRL-AASSRVSHSSSVSLFARHYASDS 60

Query: 61  ADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERL 120
           ADTG KKK EDV+PI TGHEREELEASLEG+DILDINHPVGPFGTKEEPAVIKSYYDERL
Sbjct: 61  ADTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERL 120

Query: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGDHHH 176
           VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYG+ DH H
Sbjct: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 174

[Close]

BLAST of Tan0020812 vs. ExPASy TrEMBL
Match: A0A6J1GC81 (cytochrome c oxidase subunit 5b-2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111452844 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.6e-84
Identity = 159/175 (90.86%), Postives = 163/175 (93.14%), Query Frame = 0


Query: 1   MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASRLAAASSHVSPSPSVSLFARHYASDS 60
           MWRRL  SQLKALK LPSSST ASAPLGCISQA+RL AASS VS SPSVSLFARHYASDS
Sbjct: 1   MWRRLLYSQLKALKSLPSSSTSASAPLGCISQATRL-AASSRVSHSPSVSLFARHYASDS 60

Query: 61  ADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERL 120
           ADTG KKK EDV+PI TGHEREELEASLEG+DILDINHPVGPFGTKEEPAVIKSYYDERL
Sbjct: 61  ADTGLKKKAEDVIPIVTGHEREELEASLEGRDILDINHPVGPFGTKEEPAVIKSYYDERL 120

Query: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGDHHH 176
           VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYG+ DH H
Sbjct: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHQH 174

[Close]

BLAST of Tan0020812 vs. ExPASy TrEMBL
Match: A0A0A0LDH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G538670 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.2e-83
Identity = 154/175 (88.00%), Postives = 162/175 (92.57%), Query Frame = 0


Query: 1   MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASRLAAASSHVSPSPSVSLFARHYASDS 60
           MWRRL SS LK+LK LPSSSTPASAPLGCISQA RLAAA SH+SPS ++ LFARHYASDS
Sbjct: 1   MWRRLLSSSLKSLKSLPSSSTPASAPLGCISQAPRLAAA-SHLSPSSTLPLFARHYASDS 60

Query: 61  ADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERL 120
           ADTG KK VEDVMPIATGHEREELEASLEGKDILDINHP+GPFGTKE PAVIKSYYDER+
Sbjct: 61  ADTGLKKTVEDVMPIATGHEREELEASLEGKDILDINHPIGPFGTKEAPAVIKSYYDERI 120

Query: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGDHHH 176
           VGCPGGE EDEHDV+WFRLRK VPHECPVCSQYFVLEVVGPGGSPDGYG+ DHHH
Sbjct: 121 VGCPGGEDEDEHDVIWFRLRKGVPHECPVCSQYFVLEVVGPGGSPDGYGDDDHHH 174

[Close]

BLAST of Tan0020812 vs. ExPASy TrEMBL
Match: A0A6J1IV42 (cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111479582 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.9e-83
Identity = 157/175 (89.71%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 1   MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASRLAAASSHVSPSPSVSLFARHYASDS 60
           MWRRL +SQLK+LK LPSSSTPASAPLGCIS+A+RL AA SHVSPS  VSLFAR+YASDS
Sbjct: 1   MWRRLLASQLKSLKSLPSSSTPASAPLGCISKATRLGAA-SHVSPSAPVSLFARYYASDS 60

Query: 61  ADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERL 120
           A TG  KKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKE PAVIKSYYDERL
Sbjct: 61  AGTG-VKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEAPAVIKSYYDERL 120

Query: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGDHHH 176
           VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDG+G+ DHHH
Sbjct: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGFGDDDHHH 173

[Close]

BLAST of Tan0020812 vs. TAIR 10
Match: AT3G15640.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.8e-53
Identity = 109/182 (59.89%), Postives = 131/182 (71.98%), Query Frame = 0


Query: 1   MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASR-----LAAASSHVSPSPSVSLFARH 60
           MWRR+ SSQLK L    ++   A++P   I+  +R     LAA  S +S S  V    R 
Sbjct: 1   MWRRIVSSQLKTL----AADVVAASPRRSIAATTRPVGFYLAANRSAISASSFV--IPRR 60

Query: 61  YASDSADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSY 120
           ++SDS +T   KKVEDVMPIATGHE+EELEA LEG+ + DI+ P GPFGTKE PA++KSY
Sbjct: 61  FSSDSVETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSY 120

Query: 121 YDERLVGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGD--H 176
           YD+R+VGCPGGEGEDEHDVVWF L K    ECPVC+QYF LEVVGPGG PDG+G+ D  H
Sbjct: 121 YDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDEDDEH 176

[Close]

BLAST of Tan0020812 vs. TAIR 10
Match: AT1G80230.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 203.0 bits (515), Expect = 2.0e-52
Identity = 101/174 (58.05%), Postives = 128/174 (73.56%), Query Frame = 0


Query: 1   MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASRLAAASSHVSPSPSVSLFARHYASDS 60
           MWRR+ SS LK++  + S + P+      + +++ L+ ++   S     S+F+R   S +
Sbjct: 1   MWRRIVSSHLKSISAVGSCAAPSCR--HAVVESTHLSLSTRASSIPAYSSIFSRLIGSAA 60

Query: 61  ADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERL 120
           ADT  KK+VEDVMPIATGHE+EEL+A LEG+ + DI+ P GPFGTKE PAV+KSYYD R+
Sbjct: 61  ADTAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRI 120

Query: 121 VGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGDHH 175
           VGCPGGEGEDEHDVVWF L K    ECPVC+QYF LEVVGPGG PDG+G+ DHH
Sbjct: 121 VGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVVGPGGPPDGHGD-DHH 171

[Close]

BLAST of Tan0020812 vs. TAIR 10
Match: AT3G15640.2 (Rubredoxin-like superfamily protein )

HSP 1 Score: 201.8 bits (512), Expect = 4.4e-52
Identity = 109/182 (59.89%), Postives = 131/182 (71.98%), Query Frame = 0


Query: 1   MWRRLFSSQLKALKYLPSSSTPASAPLGCISQASR-----LAAASSHVSPSPSVSLFARH 60
           MWRR+ SSQLK L    ++   A++P   I+  +R     LAA  S +S S  V    R 
Sbjct: 1   MWRRIVSSQLKTL----AADVVAASPRRSIAATTRPVGFYLAANRSAISASSFV--IPRR 60

Query: 61  YASDSADTGPKKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEEPAVIKSY 120
           ++SDS +T   KKVEDVMPIATGHE+EELEA LEG+ + DI+ P GPFGTKE PA++KSY
Sbjct: 61  FSSDS-ETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSY 120

Query: 121 YDERLVGCPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGYGNGD--H 176
           YD+R+VGCPGGEGEDEHDVVWF L K    ECPVC+QYF LEVVGPGG PDG+G+ D  H
Sbjct: 121 YDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDEDDEH 175

[Close]

BLAST of Tan0020812 vs. TAIR 10
Match: AT1G52710.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 117.9 bits (294), Expect = 8.4e-27
Identity = 54/93 (58.06%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 84  LEASLEGKDILDINHPVGPFGTKEEPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLRKDV 143
           L+    G+ +LDI+HP  PFGTKE PAV++SY+D+R +GC GGEGED HDVVWF L K  
Sbjct: 4   LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63

Query: 144 PHECPVCSQYFVLEVVGPGGSPDGYGNG-DHHH 176
             ECPVCSQYF        G PDG+G+  DHHH
Sbjct: 64  SFECPVCSQYF------EHGPPDGHGDDEDHHH 90

The following BLAST results are available for this feature:

BLAST of Tan0020812 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW15	2.5e-52	59.89	Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q9SSB8	2.8e-51	58.05	Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q9SSS5	1.2e-25	58.06	Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis thaliana OX=3702 GN...	[more]
P00428	2.0e-09	39.51	Cytochrome c oxidase subunit 5B, mitochondrial OS=Bos taurus OX=9913 GN=COX5B PE...	[more]
P10606	3.5e-09	39.51	Cytochrome c oxidase subunit 5B, mitochondrial OS=Homo sapiens OX=9606 GN=COX5B ...	[more]

BLAST of Tan0020812 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022998035.1	1.1e-84	91.43	cytochrome c oxidase subunit 5b-2, mitochondrial-like [Cucurbita maxima]	[more]
XP_023523890.1	1.1e-84	91.43	cytochrome c oxidase subunit 5b-2, mitochondrial-like [Cucurbita pepo subsp. pep...	[more]
KAA0038130.1	1.1e-84	90.29	cytochrome c oxidase subunit 5b-2 [Cucumis melo var. makuwa] >TYK20477.1 cytochr...	[more]
XP_022949516.1	5.4e-84	90.86	cytochrome c oxidase subunit 5b-2, mitochondrial-like [Cucurbita moschata]	[more]
XP_038896495.1	1.2e-83	89.71	cytochrome c oxidase subunit 5b-2, mitochondrial-like [Benincasa hispida]	[more]

BLAST of Tan0020812 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T437	5.3e-85	90.29	Cytochrome c oxidase subunit 5b-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1KBJ1	5.3e-85	91.43	cytochrome c oxidase subunit 5b-2, mitochondrial-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1GC81	2.6e-84	90.86	cytochrome c oxidase subunit 5b-2, mitochondrial-like OS=Cucurbita moschata OX=3...	[more]
A0A0A0LDH6	2.2e-83	88.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G538670 PE=4 SV=1	[more]
A0A6J1IV42	4.9e-83	89.71	cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita maxima OX=366...	[more]

BLAST of Tan0020812 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15640.1	1.8e-53	59.89	Rubredoxin-like superfamily protein	[more]
AT1G80230.1	2.0e-52	58.05	Rubredoxin-like superfamily protein	[more]
AT3G15640.2	4.4e-52	59.89	Rubredoxin-like superfamily protein	[more]
AT1G52710.1	8.4e-27	58.06	Rubredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036972	Cytochrome c oxidase, subunit Vb superfamily	GENE3D	2.60.11.10	Cytochrome c oxidase, subunit Vb	coord: 71..165 e-value: 7.3E-30 score: 104.8
IPR002124	Cytochrome c oxidase, subunit Vb	PFAM	PF01215	COX5B	coord: 81..167 e-value: 1.9E-17 score: 63.2
IPR002124	Cytochrome c oxidase, subunit Vb	PANTHER	PTHR10122	CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL	coord: 1..181
IPR002124	Cytochrome c oxidase, subunit Vb	PROSITE	PS51359	COX5B_2	coord: 69..169 score: 20.907211
IPR002124	Cytochrome c oxidase, subunit Vb	CDD	cd00924	Cyt_c_Oxidase_Vb	coord: 72..167 e-value: 9.40781E-37 score: 121.252
None	No IPR available	PANTHER	PTHR10122:SF16	SUBFAMILY NOT NAMED	coord: 1..181
None	No IPR available	SUPERFAMILY	57802	Rubredoxin-like	coord: 72..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020812.1	Tan0020812.1	mRNA
Tan0020812.2	Tan0020812.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
cellular_component	GO:0005740	mitochondrial envelope