Tan0020689 (gene) Snake gourd v1

Overview


Name	Tan0020689
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG09: 67578450 .. 67578853 (-)
RNA-Seq Expression	Tan0020689
Synteny	Tan0020689

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAAAGGACTATTCATTTTGCTTTTCGTCTCCCTTCTTTGCCTCCATCTCCTTCCATTTTGCCTATCTGAGGCTGAAACCAATTTCACCAACAAAGCTCATGACCATTACAAGAAGCTGAAGCAGGGGAGGCTCAAAAAAGGTAACAAATCTAACAATCATTTGAACTTGCACTTGAAAAACAGAGCTTGAGAAGAGATTCTTGTGCTGCATCTGCAGATTTACAGGGCAGTGAAGTGAGGGTTATGAGAGCAAGAGGAGTTTACGGCGGTGGGAGCGACATTCGGCGGGGGCGTTCGAAGAATGATGCTAACCCTTTACGGATTAAATCGACTTCTTCATTGCTGTGGAAAGTTTCATGTAGTTTCTTTAGTTTCTGTCTTCTTCTTGCTGGTTTTTAA

mRNA sequence

ATGAGAAAAGGACTATTCATTTTGCTTTTCGTCTCCCTTCTTTGCCTCCATCTCCTTCCATTTTGCCTATCTGAGGCTGAAACCAATTTCACCAACAAAGCTCATGACCATTACAAGAAGCTGAAGCAGGGGAGGCTCAAAAAAGATTTACAGGGCAGTGAAGTGAGGGTTATGAGAGCAAGAGGAGTTTACGGCGGTGGGAGCGACATTCGGCGGGGGCGTTCGAAGAATGATGCTAACCCTTTACGGATTAAATCGACTTCTTCATTGCTGTGGAAAGTTTCATGTAGTTTCTTTAGTTTCTGTCTTCTTCTTGCTGGTTTTTAA

Coding sequence (CDS)

ATGAGAAAAGGACTATTCATTTTGCTTTTCGTCTCCCTTCTTTGCCTCCATCTCCTTCCATTTTGCCTATCTGAGGCTGAAACCAATTTCACCAACAAAGCTCATGACCATTACAAGAAGCTGAAGCAGGGGAGGCTCAAAAAAGATTTACAGGGCAGTGAAGTGAGGGTTATGAGAGCAAGAGGAGTTTACGGCGGTGGGAGCGACATTCGGCGGGGGCGTTCGAAGAATGATGCTAACCCTTTACGGATTAAATCGACTTCTTCATTGCTGTGGAAAGTTTCATGTAGTTTCTTTAGTTTCTGTCTTCTTCTTGCTGGTTTTTAA

Protein sequence

MRKGLFILLFVSLLCLHLLPFCLSEAETNFTNKAHDHYKKLKQGRLKKDLQGSEVRVMRARGVYGGGSDIRRGRSKNDANPLRIKSTSSLLWKVSCSFFSFCLLLAGF

Homology

[Close]

BLAST of Tan0020689 vs. NCBI nr
Match: XP_022988599.1 (uncharacterized protein LOC111485797 [Cucurbita maxima])

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-33
Identity = 84/114 (73.68%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 1   MRKGLFILLFVSLLCLHLLPFCLSEAETNFTNKAHDHYKKLKQGRLKKDLQGSE------ 60
           MRKG F+LL +SLLCL LLPFCLSEA   FTNKA+D YK LKQGR +KDLQ SE      
Sbjct: 1   MRKGPFLLLLISLLCLCLLPFCLSEA--YFTNKAYDPYKHLKQGRPRKDLQASEQINVGA 60

Query: 61  -VRVMRARGVYGGGSDIRRGRSKNDANPLRIKSTSSLLWKVSCSFFSFCLLLAG 108
             RVMRARGVYGGG+DI RG SKNDANPLRIKSTSSLLW+VSC FFS C+LL G
Sbjct: 61  ATRVMRARGVYGGGNDIHRGHSKNDANPLRIKSTSSLLWEVSCGFFSLCVLLTG 112

[Close]

BLAST of Tan0020689 vs. NCBI nr
Match: XP_022921746.1 (uncharacterized protein LOC111429900 [Cucurbita moschata])

HSP 1 Score: 151.4 bits (381), Expect = 4.6e-33
Identity = 82/114 (71.93%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 1   MRKGLFILLFVSLLCLHLLPFCLSEAETNFTNKAHDHYKKLKQGRLKKDLQ-------GS 60
           MRKG F+LL +SLLCL LLPFCLSEA  +FTNKA+D YK LKQGR +KDLQ       G+
Sbjct: 1   MRKGPFLLLLISLLCLCLLPFCLSEA--HFTNKAYDPYKHLKQGRPRKDLQDSKQINVGA 60

Query: 61  EVRVMRARGVYGGGSDIRRGRSKNDANPLRIKSTSSLLWKVSCSFFSFCLLLAG 108
             +VMRARGVYGGG+DI RG SKNDANPLRIKSTSSLLW VSC FFS C+LL G
Sbjct: 61  ATKVMRARGVYGGGNDIHRGHSKNDANPLRIKSTSSLLWDVSCGFFSLCVLLTG 112

[Close]

BLAST of Tan0020689 vs. NCBI nr
Match: XP_023516536.1 (uncharacterized protein LOC111780387 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-32
Identity = 82/114 (71.93%), Postives = 89/114 (78.07%), Query Frame = 0


Query: 1   MRKGLFILLFVSLLCLHLLPFCLSEAETNFTNKAHDHYKKLKQGRLKKDLQ-------GS 60
           MRKG F+LL +SLLCL LLPFCLSEA   FTNKA+D YK LKQGR +KDLQ       G+
Sbjct: 1   MRKGPFLLLLISLLCLCLLPFCLSEA--YFTNKAYDPYKHLKQGRPRKDLQDSKQIKVGA 60

Query: 61  EVRVMRARGVYGGGSDIRRGRSKNDANPLRIKSTSSLLWKVSCSFFSFCLLLAG 108
              VMRARGVYGGG+DI RG SKNDANPLRIKSTSSLLW VSC FFS C+LL G
Sbjct: 61  ATTVMRARGVYGGGNDIHRGHSKNDANPLRIKSTSSLLWDVSCGFFSLCVLLTG 112

[Close]

BLAST of Tan0020689 vs. NCBI nr
Match: KAG7023439.1 (hypothetical protein SDJN02_14464, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 81/114 (71.05%), Postives = 89/114 (78.07%), Query Frame = 0


Query: 1   MRKGLFILLFVSLLCLHLLPFCLSEAETNFTNKAHDHYKKLKQGRLKKDLQ-------GS 60
           MRKG F+ L +SLLCL LLPFCLSEA   FTNKA+D YK LKQGR +KDLQ       G+
Sbjct: 1   MRKGPFLFLLISLLCLCLLPFCLSEA--YFTNKAYDPYKHLKQGRPRKDLQDSKQINVGA 60

Query: 61  EVRVMRARGVYGGGSDIRRGRSKNDANPLRIKSTSSLLWKVSCSFFSFCLLLAG 108
             +VMRARGVYGGG+DI RG SKNDANPLRIKSTSSLLW VSC FFS C+LL G
Sbjct: 61  ATKVMRARGVYGGGNDIHRGHSKNDANPLRIKSTSSLLWDVSCGFFSLCVLLTG 112

[Close]

BLAST of Tan0020689 vs. NCBI nr
Match: KAG6589767.1 (hypothetical protein SDJN03_15190, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.0 bits (349), Expect = 2.3e-29
Identity = 80/115 (69.57%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 1   MRKGLFILLFVSLLCLHLLPFCLSEAETNFTNKAHDHYKKLKQGRLKKDLQ-------GS 60
           MRKG F  L +SLLCL LLPFCLSEA   FTNKA+D YK LKQGR +KDLQ       G+
Sbjct: 1   MRKGPFPFLLISLLCLCLLPFCLSEA--YFTNKAYDPYKHLKQGRPRKDLQDSKQINVGA 60

Query: 61  EVRVMRARGVYGGGSDIRRGRSKNDANPLRIKSTSSLLWKVSCSFFSFCLLLAGF 109
             +VMRARGVYGGG+DI RG SKNDANPLRIKST SLLW VSC FFS C+LL  F
Sbjct: 61  ATKVMRARGVYGGGNDIHRGHSKNDANPLRIKST-SLLWDVSCGFFSLCVLLTVF 112

[Close]

BLAST of Tan0020689 vs. ExPASy TrEMBL
Match: A0A6J1JM10 (uncharacterized protein LOC111485797 OS=Cucurbita maxima OX=3661 GN=LOC111485797 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.8e-34
Identity = 84/114 (73.68%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 1   MRKGLFILLFVSLLCLHLLPFCLSEAETNFTNKAHDHYKKLKQGRLKKDLQGSE------ 60
           MRKG F+LL +SLLCL LLPFCLSEA   FTNKA+D YK LKQGR +KDLQ SE      
Sbjct: 1   MRKGPFLLLLISLLCLCLLPFCLSEA--YFTNKAYDPYKHLKQGRPRKDLQASEQINVGA 60

Query: 61  -VRVMRARGVYGGGSDIRRGRSKNDANPLRIKSTSSLLWKVSCSFFSFCLLLAG 108
             RVMRARGVYGGG+DI RG SKNDANPLRIKSTSSLLW+VSC FFS C+LL G
Sbjct: 61  ATRVMRARGVYGGGNDIHRGHSKNDANPLRIKSTSSLLWEVSCGFFSLCVLLTG 112

[Close]

BLAST of Tan0020689 vs. ExPASy TrEMBL
Match: A0A6J1E284 (uncharacterized protein LOC111429900 OS=Cucurbita moschata OX=3662 GN=LOC111429900 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.2e-33
Identity = 82/114 (71.93%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 1   MRKGLFILLFVSLLCLHLLPFCLSEAETNFTNKAHDHYKKLKQGRLKKDLQ-------GS 60
           MRKG F+LL +SLLCL LLPFCLSEA  +FTNKA+D YK LKQGR +KDLQ       G+
Sbjct: 1   MRKGPFLLLLISLLCLCLLPFCLSEA--HFTNKAYDPYKHLKQGRPRKDLQDSKQINVGA 60

Query: 61  EVRVMRARGVYGGGSDIRRGRSKNDANPLRIKSTSSLLWKVSCSFFSFCLLLAG 108
             +VMRARGVYGGG+DI RG SKNDANPLRIKSTSSLLW VSC FFS C+LL G
Sbjct: 61  ATKVMRARGVYGGGNDIHRGHSKNDANPLRIKSTSSLLWDVSCGFFSLCVLLTG 112

[Close]

BLAST of Tan0020689 vs. ExPASy TrEMBL
Match: A0A5A7SWW6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00500 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.6e-26
Identity = 73/116 (62.93%), Postives = 83/116 (71.55%), Query Frame = 0


Query: 1   MRKGLFILLFVSLLCLHLLPFCLSEAETNFTNKAHDHYKKLKQGRLKK---DLQGSE--- 60
           M+KGL IL   S+LCL+LLPFCL   ETNFT KA DH K+LKQGR +K   DLQGSE   
Sbjct: 1   MKKGLLILFLFSILCLYLLPFCL--CETNFTTKADDHDKQLKQGRPRKGSTDLQGSEELH 60

Query: 61  -----VRVMRARGVYGGGSDIRRGRSKNDANPLRIKSTSSLLWKVSCSFFSFCLLL 106
                V VMRA+ VYGG +DI  GRSKNDAN LRIKS SSL+WKVS  F  FCL++
Sbjct: 61  GGAAVVTVMRAKAVYGGANDIHHGRSKNDANSLRIKSISSLVWKVSFGFLGFCLIV 114

[Close]

BLAST of Tan0020689 vs. ExPASy TrEMBL
Match: A0A0A0LW17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257310 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 66/116 (56.90%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 1   MRKGLFILLFVSLLCLHLLPFCLSEAETNFTNKAHDHYKKLKQGRLKKDLQGSE------ 60
           M+KGL +L   S++ L+LLPFCL   ETNFT KA DH K+LKQGR +KD+Q SE      
Sbjct: 1   MKKGLLLLFLFSIIFLYLLPFCL--CETNFTTKADDHNKQLKQGRPRKDVQSSEELHGGA 60

Query: 61  --VRVMRARGVYGGGSDIRRGRSKNDANPLRIKSTSSLLWKVSCSFFSFCLLLAGF 109
               VMRA+ VYGG +DI  G SKNDAN L IKS SSL+WKVS  F  FC+++ GF
Sbjct: 61  SVATVMRAKAVYGGANDIHHGHSKNDANSLWIKSISSLVWKVSFGFLGFCVVVKGF 114

[Close]

BLAST of Tan0020689 vs. ExPASy TrEMBL
Match: A0A6J1C4Y5 (uncharacterized protein LOC111007432 OS=Momordica charantia OX=3673 GN=LOC111007432 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.5e-13
Identity = 57/106 (53.77%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 4   GLFILLFVSLLCLHLLPFCLSEAETNFTNKAHDHYK-KLKQGRLKKDLQGSEV------- 63
           GL ILL +S+     LP C S AETNFT K  D YK +LKQGR  KDL+G          
Sbjct: 5   GLIILLLISIDL--SLPICHS-AETNFTIKPEDLYKQQLKQGRPTKDLEGERKESEETGA 64

Query: 64  -----RVMRARGVYGGGSDIRRGRSKNDANPLRIKSTSSLLWKVSC 97
                ++MRARGVYGG SD+RRG SKNDA  LRIKS  S  W+V C
Sbjct: 65  GATAGKMMRARGVYGGASDMRRGHSKNDATSLRIKSIPSSFWEVLC 107

The following BLAST results are available for this feature:

BLAST of Tan0020689 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0020689 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988599.1	1.2e-33	73.68	uncharacterized protein LOC111485797 [Cucurbita maxima]	[more]
XP_022921746.1	4.6e-33	71.93	uncharacterized protein LOC111429900 [Cucurbita moschata]	[more]
XP_023516536.1	2.3e-32	71.93	uncharacterized protein LOC111780387 [Cucurbita pepo subsp. pepo]	[more]
KAG7023439.1	3.0e-32	71.05	hypothetical protein SDJN02_14464, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6589767.1	2.3e-29	69.57	hypothetical protein SDJN03_15190, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0020689 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JM10	5.8e-34	73.68	uncharacterized protein LOC111485797 OS=Cucurbita maxima OX=3661 GN=LOC111485797...	[more]
A0A6J1E284	2.2e-33	71.93	uncharacterized protein LOC111429900 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A5A7SWW6	7.6e-26	62.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LW17	1.6e-23	56.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257310 PE=4 SV=1	[more]
A0A6J1C4Y5	2.5e-13	53.77	uncharacterized protein LOC111007432 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of Tan0020689 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020689.1	Tan0020689.1	mRNA