Tan0020643 (gene) Snake gourd v1

Overview


Name	Tan0020643
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RING-type domain-containing protein
Location	LG08: 71663292 .. 71664791 (-)
RNA-Seq Expression	Tan0020643
Synteny	Tan0020643

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTATTATATTAGTTTGAAGTGCATATAAACTAACATGGACACTCATAAATAAGAAAAGAAAAAAACAAATTAATAATAGATTTTTTCCATTAAAATTTTAGTATTTTTCAATGAAGATCGATTATTAAGATATATTAATGTTAAGCAAGGGAGAAATGGGTAAATTGGGATCCACATAAAAGGATTCATATCTCAGCCTGAAGTAAAGAGCAATACGCTCACGAGATCCCATAATGGAAGTATTAGAACCCCCCACTGTAATCATGGCCGCCCTCTCTGCTCTCTCTCCGCCGCATCTCTCCGATCTCTCTCACTCCATCTTCTCCGACATCCACCACCGCCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCATCGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGCCGCCGTCCAAGTCCCTCCCCCACCACCCTTCCACCGTCACCCCTCGGGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTACGGCAGCACAATCCGGCTGCCCTCAAAACTCCGATCACCCAATGGCGTTCGACCCTCTGCAGAATCTACTCCGATTCCCTCTTGACGATCTCCGGCGTCGCCACTGGCGGCGCCGGGGTCCTGATTCCGTACATTGAGACGGTGGCGAGGTGCTGGAAGTTCGTGGGGTTTGTTGGGAGGTGCAGCGGCGGGAAGGCCAGGAGAGAAGTGGCGGCGTCTCCGGTGGCCGTGGTGGAGCTGCCGTCGGTGGCGGTGGGCGGCGGTGGGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAATGAAGGGAGAGAGGCGTGTCAATTGCCTTGTGAACACTTATTCCATTGGCTCTGTATTCTTCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTTCCCACTGATGATATTCTCGGCGAGATCCAACGGCTCTGGGAGATTCTACTCAAGGTGGGCTCCTCATTCGATGGAGATTAACGTCCAGGATTGAACAATTACATGGAGTTACCATAGAATCGGATGTAGAGGATGAGATTAACACGTGAGACTAACTTACACGTGCGGAGGAAACTGGAGGTCTGAAGATTTGATAGAGACACGTGTGGTTCACCTTAGGAAGAAAATGAATCTTTGTATTTAGGGATTAGGAATTAAGGGATTTTTTTTTTTTTGTGAATAATTATTTTTATGTTTTATTTTCTAGTGTACACAAGAGTAAAAGATTCACCTAGTTCATTGTTTTTGCTTTGTTGTACGGCATATTAGAATTGTGTGGTTGGTTTTTATAAAATGAATATTTTATTATGGCACTTTAATATCTCAATCTTCATAGGGATCTAAGTGTGCCAAATTAATTGGAAGAAAAGTAATTAGTATTAGAAATAAATTTGTTGGAATCATTTACT

mRNA sequence

GTTTATTATATTAGTTTGAAGTGCATATAAACTAACATGGACACTCATAAATAAGAAAAGAAAAAAACAAATTAATAATAGATTTTTTCCATTAAAATTTTAGTATTTTTCAATGAAGATCGATTATTAAGATATATTAATGTTAAGCAAGGGAGAAATGGGTAAATTGGGATCCACATAAAAGGATTCATATCTCAGCCTGAAGTAAAGAGCAATACGCTCACGAGATCCCATAATGGAAGTATTAGAACCCCCCACTGTAATCATGGCCGCCCTCTCTGCTCTCTCTCCGCCGCATCTCTCCGATCTCTCTCACTCCATCTTCTCCGACATCCACCACCGCCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCATCGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGCCGCCGTCCAAGTCCCTCCCCCACCACCCTTCCACCGTCACCCCTCGGGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTACGGCAGCACAATCCGGCTGCCCTCAAAACTCCGATCACCCAATGGCGTTCGACCCTCTGCAGAATCTACTCCGATTCCCTCTTGACGATCTCCGGCGTCGCCACTGGCGGCGCCGGGGTCCTGATTCCGTACATTGAGACGGTGGCGAGGTGCTGGAAGTTCGTGGGGTTTGTTGGGAGGTGCAGCGGCGGGAAGGCCAGGAGAGAAGTGGCGGCGTCTCCGGTGGCCGTGGTGGAGCTGCCGTCGGTGGCGGTGGGCGGCGGTGGGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAATGAAGGGAGAGAGGCGTGTCAATTGCCTTGTGAACACTTATTCCATTGGCTCTGTATTCTTCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTTCCCACTGATGATATTCTCGGCGAGATCCAACGGCTCTGGGAGATTCTACTCAAGGTGGGCTCCTCATTCGATGGAGATTAACGTCCAGGATTGAACAATTACATGGAGTTACCATAGAATCGGATGTAGAGGATGAGATTAACACGTGAGACTAACTTACACGTGCGGAGGAAACTGGAGGTCTGAAGATTTGATAGAGACACGTGTGGTTCACCTTAGGAAGAAAATGAATCTTTGTATTTAGGGATTAGGAATTAAGGGATTTTTTTTTTTTTGTGAATAATTATTTTTATGTTTTATTTTCTAGTGTACACAAGAGTAAAAGATTCACCTAGTTCATTGTTTTTGCTTTGTTGTACGGCATATTAGAATTGTGTGGTTGGTTTTTATAAAATGAATATTTTATTATGGCACTTTAATATCTCAATCTTCATAGGGATCTAAGTGTGCCAAATTAATTGGAAGAAAAGTAATTAGTATTAGAAATAAATTTGTTGGAATCATTTACT

Coding sequence (CDS)

ATGGAAGTATTAGAACCCCCCACTGTAATCATGGCCGCCCTCTCTGCTCTCTCTCCGCCGCATCTCTCCGATCTCTCTCACTCCATCTTCTCCGACATCCACCACCGCCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCATCGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGCCGCCGTCCAAGTCCCTCCCCCACCACCCTTCCACCGTCACCCCTCGGGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTACGGCAGCACAATCCGGCTGCCCTCAAAACTCCGATCACCCAATGGCGTTCGACCCTCTGCAGAATCTACTCCGATTCCCTCTTGACGATCTCCGGCGTCGCCACTGGCGGCGCCGGGGTCCTGATTCCGTACATTGAGACGGTGGCGAGGTGCTGGAAGTTCGTGGGGTTTGTTGGGAGGTGCAGCGGCGGGAAGGCCAGGAGAGAAGTGGCGGCGTCTCCGGTGGCCGTGGTGGAGCTGCCGTCGGTGGCGGTGGGCGGCGGTGGGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAATGAAGGGAGAGAGGCGTGTCAATTGCCTTGTGAACACTTATTCCATTGGCTCTGTATTCTTCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTTCCCACTGATGATATTCTCGGCGAGATCCAACGGCTCTGGGAGATTCTACTCAAGGTGGGCTCCTCATTCGATGGAGATTAA

Protein sequence

MEVLEPPTVIMAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLIARFLLSALRRLSRPFQPPSKSLPHHPSTVTPRDLDAAVLLLLLCEVRQHNPAALKTPITQWRSTLCRIYSDSLLTISGVATGGAGVLIPYIETVARCWKFVGFVGRCSGGKARREVAASPVAVVELPSVAVGGGGAVECVICKEEMNEGREACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTDDILGEIQRLWEILLKVGSSFDGD

Homology

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BLAST of Tan0020643 vs. ExPASy Swiss-Prot
Match: Q8GXF8 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 GN=SGR9 PE=1 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 5.1e-71
Identity = 151/277 (54.51%), Postives = 184/277 (66.43%), Query Frame = 0


Query: 5   EPPTVIMAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSLSLSH 64
           E  T+IMA+LSALSP HL++L+HSI S  HH RRRL  +LSSPTLFSLTLRHL SLSL  
Sbjct: 4   ENTTIIMASLSALSPSHLTNLTHSILSISHHHRRRLGAVLSSPTLFSLTLRHLLSLSLPD 63

Query: 65  KSLLIARFLLSALRRLSRPFQPPSKSLPHHPSTVTPRDLDAAVLLLLLCEVRQHNPAALK 124
           K+ LIA  LLS L     P     K    +  T+  RDLDA VLLL LCE  Q +P  L+
Sbjct: 64  KTHLIANHLLSLL----HPLLIHRKHHSSYAVTMKLRDLDAVVLLLFLCETHQLHPDVLE 123

Query: 125 TPITQWRSTLCRIYSDSLLT-ISGVATGGAGVLIPYIETVARCWKFVGFVG-----RCSG 184
                WR  L   YS+++L+  SG+ T  AG+L+PYIET+ RC +FV  +G     R   
Sbjct: 124 ASADNWREILGNTYSNNMLSNNSGLWTCDAGILMPYIETLVRCKRFVDIMGGYNHLRRRD 183

Query: 185 GKARREVAASPVAV-----VELPSVAVGGGGAVECVICKEEMNEGREACQLPCEHLFHWL 244
            K   +V A+  AV     VE+ +VA    G VECVICKEEM+EGR+ C++PC+H FHW 
Sbjct: 184 QKEGYQVPAARAAVVALRAVEVFNVAASNAGEVECVICKEEMSEGRDVCEMPCQHFFHWK 243

Query: 245 CILPWLRKRNTCPCCRFQLPTDDILGEIQRLWEILLK 271
           CILPWL K+NTCP CRFQLPTDD+  EIQRLWEIL+K
Sbjct: 244 CILPWLSKKNTCPFCRFQLPTDDVFSEIQRLWEILVK 276

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BLAST of Tan0020643 vs. ExPASy Swiss-Prot
Match: Q6GPV5 (E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.7e-14
Identity = 38/72 (52.78%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 187 ASPVAVVELPSVAV---GGGGAVECVICKEEMNEGREACQLPCEHLFHWLCILPWLRKRN 246
           AS   V  LP V V       A++C +C  E  EG    QLPCEHLFH  CILPWL K N
Sbjct: 55  ASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTN 114

Query: 247 TCPCCRFQLPTD 256
           +CP CR +LPTD
Sbjct: 115 SCPLCRHELPTD 126

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BLAST of Tan0020643 vs. ExPASy Swiss-Prot
Match: Q9VE61 (E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN=CG7694 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-13
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 187 ASPVAVVELP---SVAVGGGGAVECVICKEEMNEGREACQLPCEHLFHWLCILPWLRKRN 246
           AS  A++ELP    V    GG +EC +CKE   EG++   LPC+H FH  CIL WL+K N
Sbjct: 46  ASKRAILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTN 105

Query: 247 TCPCCRFQLPTDD-ILGEIQR 264
           +CP CR++L TDD +  E++R
Sbjct: 106 SCPLCRYELETDDPVYEELRR 126

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BLAST of Tan0020643 vs. ExPASy Swiss-Prot
Match: Q9P0P0 (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-13
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 187 ASPVAVVELPSVAVGGGGA-VECVICKEEMNEGREACQLPCEHLFHWLCILPWLRKRNTC 246
           A+   V  LP   + G  A ++C +C  E  E   A ++PC HLFH  CILPWL K N+C
Sbjct: 54  AAKTVVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSC 113

Query: 247 PCCRFQLPTDD 257
           P CR++LPTDD
Sbjct: 114 PLCRYELPTDD 124

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BLAST of Tan0020643 vs. ExPASy Swiss-Prot
Match: Q3T0W3 (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.2e-13
Identity = 35/71 (49.30%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 187 ASPVAVVELPSVAVGGGGA-VECVICKEEMNEGREACQLPCEHLFHWLCILPWLRKRNTC 246
           A+  AV  LP   + G  A ++C +C  E  E   A ++PC HLFH  CILPWL K N+C
Sbjct: 54  AAKTAVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSC 113

Query: 247 PCCRFQLPTDD 257
           P CR +LPTDD
Sbjct: 114 PLCRHELPTDD 124

[Close]

BLAST of Tan0020643 vs. NCBI nr
Match: KAG6596438.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 503.8 bits (1296), Expect = 9.3e-139
Identity = 252/280 (90.00%), Postives = 261/280 (93.21%), Query Frame = 0


Query: 1   MEVLEPPTVIMAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           ME L+P TVIMAALS LSPPHLSDLSHSIFSD+H  RRRLTFILSSPTLFS TLRHLNSL
Sbjct: 1   MEELKPSTVIMAALSTLSPPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60

Query: 61  SLSHKSLLIARFLLSALRRLSRPFQPPSKSLPHHPST--VTPRDLDAAVLLLLLCEVRQH 120
           SLSHKSLLIARFLLSALRRLSRPFQ PSKS PHHPST  VTPRDLDAAVLLLLLC+VRQH
Sbjct: 61  SLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQH 120

Query: 121 NPAALKTPITQWRSTLCRIYSDSLLTISGVATGGAGVLIPYIETVARCWKFVGFVGRCSG 180
           NPAAL+TPITQWRSTLCRIYSDSLLTISG+ATGGAG  IPYIETVARCWKFVGFV   +G
Sbjct: 121 NPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNG 180

Query: 181 GKARREVAASPVAVVELPSVAVGGGGAVECVICKEEMNEGREACQLPCEHLFHWLCILPW 240
           GKARREVAASPVAVVELPSVAVGG  AVECVICKEEMNEGR+ACQLPCEHLFHWLCILPW
Sbjct: 181 GKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPW 240

Query: 241 LRKRNTCPCCRFQLPTDDILGEIQRLWEILLKVGSSFDGD 279
           LRKRNTCPCCRFQLPTDDI GEIQRLW+IL+KVGSS DGD
Sbjct: 241 LRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSSSDGD 280

[Close]

BLAST of Tan0020643 vs. NCBI nr
Match: XP_022935892.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucurbita moschata])

HSP 1 Score: 500.7 bits (1288), Expect = 7.9e-138
Identity = 251/280 (89.64%), Postives = 260/280 (92.86%), Query Frame = 0


Query: 1   MEVLEPPTVIMAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           ME L+P TVIMAALS LS PHLSDLSHSIFSD+H  RRRLTFILSSPTLFS TLRHLNSL
Sbjct: 1   MEELKPSTVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60

Query: 61  SLSHKSLLIARFLLSALRRLSRPFQPPSKSLPHHPST--VTPRDLDAAVLLLLLCEVRQH 120
           SLSHKSLLIARFLLSALRRLSRPFQ PSKS PHHPST  VTPRDLDAAVLLLLLC+VRQH
Sbjct: 61  SLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQH 120

Query: 121 NPAALKTPITQWRSTLCRIYSDSLLTISGVATGGAGVLIPYIETVARCWKFVGFVGRCSG 180
           NPAAL+TPITQWRSTLCRIYSDSLLTISG+ATGGAG  IPYIETVARCWKFVGFV   +G
Sbjct: 121 NPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNG 180

Query: 181 GKARREVAASPVAVVELPSVAVGGGGAVECVICKEEMNEGREACQLPCEHLFHWLCILPW 240
           GKARREVAASPVAVVELPSVAVGG  AVECVICKEEMNEGR+ACQLPCEHLFHWLCILPW
Sbjct: 181 GKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPW 240

Query: 241 LRKRNTCPCCRFQLPTDDILGEIQRLWEILLKVGSSFDGD 279
           LRKRNTCPCCRFQLPTDDI GEIQRLW+IL+KVGSS DGD
Sbjct: 241 LRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSSSDGD 280

[Close]

BLAST of Tan0020643 vs. NCBI nr
Match: XP_023005737.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucurbita maxima])

HSP 1 Score: 497.7 bits (1280), Expect = 6.7e-137
Identity = 247/280 (88.21%), Postives = 259/280 (92.50%), Query Frame = 0


Query: 1   MEVLEPPTVIMAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           ME L+P TVIMAALS LSPPHLSDLSHSIFSD+H  RRRLTFILSSPTLFS TLRHLNSL
Sbjct: 1   MEELKPSTVIMAALSTLSPPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60

Query: 61  SLSHKSLLIARFLLSALRRLSRPFQPPSKSLPHHPST--VTPRDLDAAVLLLLLCEVRQH 120
           SLSHKSLL+ARFLLSALRRLSRPFQ PSKS PHHPST  VTPRDLDAAVLLLLLC+VRQH
Sbjct: 61  SLSHKSLLVARFLLSALRRLSRPFQTPSKSFPHHPSTAFVTPRDLDAAVLLLLLCDVRQH 120

Query: 121 NPAALKTPITQWRSTLCRIYSDSLLTISGVATGGAGVLIPYIETVARCWKFVGFVGRCSG 180
           NPAAL+TPIT WRSTLCRIYSDSLLTISG+ATGG+G +IPYIETV RCWKFVGFV   +G
Sbjct: 121 NPAALETPITHWRSTLCRIYSDSLLTISGIATGGSGAIIPYIETVGRCWKFVGFVVSRNG 180

Query: 181 GKARREVAASPVAVVELPSVAVGGGGAVECVICKEEMNEGREACQLPCEHLFHWLCILPW 240
           GKARREVAASPVAVVELPSVAVGG  AVECVICKEEMNEGR+ACQLPCEHLFHWLCILPW
Sbjct: 181 GKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPW 240

Query: 241 LRKRNTCPCCRFQLPTDDILGEIQRLWEILLKVGSSFDGD 279
           LRKRNTCPCCRFQLPTDDI GEIQRLW+IL+KVGS  DGD
Sbjct: 241 LRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSPSDGD 280

[Close]

BLAST of Tan0020643 vs. NCBI nr
Match: XP_023538929.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 497.7 bits (1280), Expect = 6.7e-137
Identity = 249/280 (88.93%), Postives = 260/280 (92.86%), Query Frame = 0


Query: 1   MEVLEPPTVIMAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           ME L+P TVIMAALS LSPPHLSDLSHSIFSD+H  RRRLTFILSSPTLFS TLRHLNSL
Sbjct: 1   MEELKPSTVIMAALSTLSPPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60

Query: 61  SLSHKSLLIARFLLSALRRLSRPFQPPSKSLPHHPST--VTPRDLDAAVLLLLLCEVRQH 120
           SLS+KSLLIARFLLSALRRLSRPFQ PSKS PHHPST  VTPRDLDAAVLLLLLC+VRQH
Sbjct: 61  SLSNKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQH 120

Query: 121 NPAALKTPITQWRSTLCRIYSDSLLTISGVATGGAGVLIPYIETVARCWKFVGFVGRCSG 180
           NPAAL+TPIT+WRSTLCRIYSDSLLTISG+ATGGAG  IPYIETVARCWKFVGFV   +G
Sbjct: 121 NPAALETPITRWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNG 180

Query: 181 GKARREVAASPVAVVELPSVAVGGGGAVECVICKEEMNEGREACQLPCEHLFHWLCILPW 240
           GKARREVAASPVAVVELPSVAVGG  AVECVICKEEMNEGR+ACQLPCEHLFHWLCILPW
Sbjct: 181 GKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPW 240

Query: 241 LRKRNTCPCCRFQLPTDDILGEIQRLWEILLKVGSSFDGD 279
           LRKRNTCPCCRFQLPTDDI GEIQRLW+IL+KVGS  DGD
Sbjct: 241 LRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSPSDGD 280

[Close]

BLAST of Tan0020643 vs. NCBI nr
Match: KAG7027979.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 489.6 bits (1259), Expect = 1.8e-134
Identity = 244/270 (90.37%), Postives = 253/270 (93.70%), Query Frame = 0


Query: 11  MAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLIA 70
           MAALS LSPPHLSDLSHSIFSD+H  RRRLTFILSSPTLFS TLRHLNSLSLS+KSLLIA
Sbjct: 1   MAALSTLSPPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSLSLSNKSLLIA 60

Query: 71  RFLLSALRRLSRPFQPPSKSLPHHPST--VTPRDLDAAVLLLLLCEVRQHNPAALKTPIT 130
           RFLLSALRRLSRPFQ PSKS PHHPST  VTPRDLDAAVLLLLLC+VRQHNPAAL+TPIT
Sbjct: 61  RFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQHNPAALETPIT 120

Query: 131 QWRSTLCRIYSDSLLTISGVATGGAGVLIPYIETVARCWKFVGFVGRCSGGKARREVAAS 190
           QWRSTLCRIYSDSLLTISG+ATGGAG  IPYIETVARCWKFVGFV   +GGKARREVAAS
Sbjct: 121 QWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNGGKARREVAAS 180

Query: 191 PVAVVELPSVAVGGGGAVECVICKEEMNEGREACQLPCEHLFHWLCILPWLRKRNTCPCC 250
           PVAVVELPSVAVGG  AVECVICKEEMNEGR+ACQLPCEHLFHWLCILPWLRKRNTCPCC
Sbjct: 181 PVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKRNTCPCC 240

Query: 251 RFQLPTDDILGEIQRLWEILLKVGSSFDGD 279
           RFQLPTDDI GEIQRLW+IL+KVGSS DGD
Sbjct: 241 RFQLPTDDIFGEIQRLWDILVKVGSSSDGD 270

[Close]

BLAST of Tan0020643 vs. ExPASy TrEMBL
Match: A0A6J1F6V7 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucurbita moschata OX=3662 GN=LOC111442657 PE=4 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 3.8e-138
Identity = 251/280 (89.64%), Postives = 260/280 (92.86%), Query Frame = 0


Query: 1   MEVLEPPTVIMAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           ME L+P TVIMAALS LS PHLSDLSHSIFSD+H  RRRLTFILSSPTLFS TLRHLNSL
Sbjct: 1   MEELKPSTVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60

Query: 61  SLSHKSLLIARFLLSALRRLSRPFQPPSKSLPHHPST--VTPRDLDAAVLLLLLCEVRQH 120
           SLSHKSLLIARFLLSALRRLSRPFQ PSKS PHHPST  VTPRDLDAAVLLLLLC+VRQH
Sbjct: 61  SLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQH 120

Query: 121 NPAALKTPITQWRSTLCRIYSDSLLTISGVATGGAGVLIPYIETVARCWKFVGFVGRCSG 180
           NPAAL+TPITQWRSTLCRIYSDSLLTISG+ATGGAG  IPYIETVARCWKFVGFV   +G
Sbjct: 121 NPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNG 180

Query: 181 GKARREVAASPVAVVELPSVAVGGGGAVECVICKEEMNEGREACQLPCEHLFHWLCILPW 240
           GKARREVAASPVAVVELPSVAVGG  AVECVICKEEMNEGR+ACQLPCEHLFHWLCILPW
Sbjct: 181 GKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPW 240

Query: 241 LRKRNTCPCCRFQLPTDDILGEIQRLWEILLKVGSSFDGD 279
           LRKRNTCPCCRFQLPTDDI GEIQRLW+IL+KVGSS DGD
Sbjct: 241 LRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSSSDGD 280

[Close]

BLAST of Tan0020643 vs. ExPASy TrEMBL
Match: A0A6J1KTZ6 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucurbita maxima OX=3661 GN=LOC111498644 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 3.2e-137
Identity = 247/280 (88.21%), Postives = 259/280 (92.50%), Query Frame = 0


Query: 1   MEVLEPPTVIMAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           ME L+P TVIMAALS LSPPHLSDLSHSIFSD+H  RRRLTFILSSPTLFS TLRHLNSL
Sbjct: 1   MEELKPSTVIMAALSTLSPPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60

Query: 61  SLSHKSLLIARFLLSALRRLSRPFQPPSKSLPHHPST--VTPRDLDAAVLLLLLCEVRQH 120
           SLSHKSLL+ARFLLSALRRLSRPFQ PSKS PHHPST  VTPRDLDAAVLLLLLC+VRQH
Sbjct: 61  SLSHKSLLVARFLLSALRRLSRPFQTPSKSFPHHPSTAFVTPRDLDAAVLLLLLCDVRQH 120

Query: 121 NPAALKTPITQWRSTLCRIYSDSLLTISGVATGGAGVLIPYIETVARCWKFVGFVGRCSG 180
           NPAAL+TPIT WRSTLCRIYSDSLLTISG+ATGG+G +IPYIETV RCWKFVGFV   +G
Sbjct: 121 NPAALETPITHWRSTLCRIYSDSLLTISGIATGGSGAIIPYIETVGRCWKFVGFVVSRNG 180

Query: 181 GKARREVAASPVAVVELPSVAVGGGGAVECVICKEEMNEGREACQLPCEHLFHWLCILPW 240
           GKARREVAASPVAVVELPSVAVGG  AVECVICKEEMNEGR+ACQLPCEHLFHWLCILPW
Sbjct: 181 GKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPW 240

Query: 241 LRKRNTCPCCRFQLPTDDILGEIQRLWEILLKVGSSFDGD 279
           LRKRNTCPCCRFQLPTDDI GEIQRLW+IL+KVGS  DGD
Sbjct: 241 LRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSPSDGD 280

[Close]

BLAST of Tan0020643 vs. ExPASy TrEMBL
Match: A0A0A0LAQ3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736610 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 4.1e-132
Identity = 239/284 (84.15%), Postives = 261/284 (91.90%), Query Frame = 0


Query: 1   MEVLEPPTVIMAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           ME LEPP+VI AAL+ LSPP L+DLSHSIFS+IH  RRRLTFILSSPTLFSLTLRHLNSL
Sbjct: 1   MEELEPPSVITAALATLSPPRLADLSHSIFSEIHQHRRRLTFILSSPTLFSLTLRHLNSL 60

Query: 61  SLSHKSLLIARFLLSALRRLSRPFQPPSKSLPHHPST--VTPRDLDAAVLLLLLCEVRQH 120
           SLSHKSLL+ARFLLSALRRLSRPFQ PSK LP+HPST  ++P+DLDAAVLLLLLCEVRQH
Sbjct: 61  SLSHKSLLLARFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQH 120

Query: 121 NPAALKTPITQWRSTLCRIYSDSLLTISGVATGGAGVLIPYIETVARCWKFVGFVGRCSG 180
           NPAAL+TPIT+WR+TLC+IYSDSLLT+SG+ATGG G LIPYI+TV RCWKFVGFVG C G
Sbjct: 121 NPAALRTPITKWRATLCKIYSDSLLTVSGLATGGGGALIPYIDTVVRCWKFVGFVGSC-G 180

Query: 181 GKARREVAASPVAVVELPSVAVGGGG-AVECVICKEEMNEGREACQLPCEHLFHWLCILP 240
           GK RREVAASP+AVVELPSVAVGGGG AVECVICKEEM EGR+AC+LPC+HLFHWLCILP
Sbjct: 181 GKVRREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILP 240

Query: 241 WLRKRNTCPCCRFQLPTDDILGEIQRLWEILLKVGSSF---DGD 279
           WLRKRNTCPCCRFQLPTDD+LGEIQRLWEIL KVGS+    DGD
Sbjct: 241 WLRKRNTCPCCRFQLPTDDVLGEIQRLWEILFKVGSTMCTSDGD 283

[Close]

BLAST of Tan0020643 vs. ExPASy TrEMBL
Match: A0A1S4DUS9 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo OX=3656 GN=LOC103486430 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 9.1e-132
Identity = 238/284 (83.80%), Postives = 260/284 (91.55%), Query Frame = 0


Query: 1   MEVLEPPTVIMAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           ME LEPP+VIMAAL+ LSPP L+DLSHSIFS++H  RRRLTFILSSPTLFSLTLRHLNSL
Sbjct: 1   MEELEPPSVIMAALATLSPPRLTDLSHSIFSEVHQHRRRLTFILSSPTLFSLTLRHLNSL 60

Query: 61  SLSHKSLLIARFLLSALRRLSRPFQPPSKSLPHHPST--VTPRDLDAAVLLLLLCEVRQH 120
           SLSHKSLL+ARFLLSALRRLSRPFQ PSK LP+HPST  ++P+DLDAAVLLLLLCEVRQH
Sbjct: 61  SLSHKSLLLARFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQH 120

Query: 121 NPAALKTPITQWRSTLCRIYSDSLLTISGVATGGAGVLIPYIETVARCWKFVGFVGRCSG 180
           NPAAL+TPIT+WR+TLCRIYS+SLLTISG+ATGG G LIPYI+TV RCWKFVGFVG C G
Sbjct: 121 NPAALRTPITKWRATLCRIYSESLLTISGLATGGGGALIPYIDTVVRCWKFVGFVGSC-G 180

Query: 181 GKARREVAASPVAVVELPSVAV-GGGGAVECVICKEEMNEGREACQLPCEHLFHWLCILP 240
           GK RREVAASP+AVVELPSVAV GGGG VECVICKEEM EGR+AC+LPC+HLFHWLCILP
Sbjct: 181 GKVRREVAASPMAVVELPSVAVGGGGGTVECVICKEEMGEGRDACKLPCDHLFHWLCILP 240

Query: 241 WLRKRNTCPCCRFQLPTDDILGEIQRLWEILLKVGSSF---DGD 279
           WLRKRNTCPCCRFQLPTDD+ GEIQRLWEIL KVGS+    DGD
Sbjct: 241 WLRKRNTCPCCRFQLPTDDVFGEIQRLWEILFKVGSTMCTSDGD 283

[Close]

BLAST of Tan0020643 vs. ExPASy TrEMBL
Match: A0A6J1CX45 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Momordica charantia OX=3673 GN=LOC111015097 PE=4 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 3.5e-131
Identity = 238/283 (84.10%), Postives = 256/283 (90.46%), Query Frame = 0


Query: 1   MEVLEPPTVIMAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           ME LEPPTVIMAALSALSP HLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSL
Sbjct: 30  MEELEPPTVIMAALSALSPLHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSL 89

Query: 61  SLSHKSLLIARFLLSALRRLSRPFQPPSKSLPHHPST--VTPRDLDAAVLLLLLCEVRQH 120
           SLSHKSLLIARFLLSALRRL  PFQPP+KSLP HPST  +TPRDLDAAVLLLLLCEVRQH
Sbjct: 90  SLSHKSLLIARFLLSALRRLCHPFQPPAKSLPQHPSTAAITPRDLDAAVLLLLLCEVRQH 149

Query: 121 NPAALKTPITQWRSTLCRIYSDSLLTISGVATGGAGVLIPYIETVARCWKFVGFVGRCSG 180
           NPAAL+TP+ +WR+ LCRIYSDS+L+ISG+ +GG  V++PY+ETVARCWKFVGFVG C G
Sbjct: 150 NPAALETPLPKWRAALCRIYSDSILSISGIISGGGAVMVPYVETVARCWKFVGFVGSC-G 209

Query: 181 GKARREVAASPVAVVELPSVAVGGGGAVECVICKEEMNEGREACQLPCEHLFHWLCILPW 240
           GK +REVAASPVAVVELPSVA     AVECVICKEEM EGR+ACQLPCEHLFHWLCILPW
Sbjct: 210 GKGKREVAASPVAVVELPSVA--AAAAVECVICKEEMGEGRDACQLPCEHLFHWLCILPW 269

Query: 241 LRKRNTCPCCRFQLPTDDILGEIQRLWEILLKVGSSF---DGD 279
           LRKRNTCPCCRFQLPTDD+  EIQRLWEILLK+GS+    DGD
Sbjct: 270 LRKRNTCPCCRFQLPTDDVFAEIQRLWEILLKLGSTITTSDGD 309

[Close]

BLAST of Tan0020643 vs. TAIR 10
Match: AT5G02750.1 (RING/U-box superfamily protein )

HSP 1 Score: 269.2 bits (687), Expect = 3.6e-72
Identity = 151/277 (54.51%), Postives = 184/277 (66.43%), Query Frame = 0


Query: 5   EPPTVIMAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSLSLSH 64
           E  T+IMA+LSALSP HL++L+HSI S  HH RRRL  +LSSPTLFSLTLRHL SLSL  
Sbjct: 4   ENTTIIMASLSALSPSHLTNLTHSILSISHHHRRRLGAVLSSPTLFSLTLRHLLSLSLPD 63

Query: 65  KSLLIARFLLSALRRLSRPFQPPSKSLPHHPSTVTPRDLDAAVLLLLLCEVRQHNPAALK 124
           K+ LIA  LLS L     P     K    +  T+  RDLDA VLLL LCE  Q +P  L+
Sbjct: 64  KTHLIANHLLSLL----HPLLIHRKHHSSYAVTMKLRDLDAVVLLLFLCETHQLHPDVLE 123

Query: 125 TPITQWRSTLCRIYSDSLLT-ISGVATGGAGVLIPYIETVARCWKFVGFVG-----RCSG 184
                WR  L   YS+++L+  SG+ T  AG+L+PYIET+ RC +FV  +G     R   
Sbjct: 124 ASADNWREILGNTYSNNMLSNNSGLWTCDAGILMPYIETLVRCKRFVDIMGGYNHLRRRD 183

Query: 185 GKARREVAASPVAV-----VELPSVAVGGGGAVECVICKEEMNEGREACQLPCEHLFHWL 244
            K   +V A+  AV     VE+ +VA    G VECVICKEEM+EGR+ C++PC+H FHW 
Sbjct: 184 QKEGYQVPAARAAVVALRAVEVFNVAASNAGEVECVICKEEMSEGRDVCEMPCQHFFHWK 243

Query: 245 CILPWLRKRNTCPCCRFQLPTDDILGEIQRLWEILLK 271
           CILPWL K+NTCP CRFQLPTDD+  EIQRLWEIL+K
Sbjct: 244 CILPWLSKKNTCPFCRFQLPTDDVFSEIQRLWEILVK 276

[Close]

BLAST of Tan0020643 vs. TAIR 10
Match: AT5G08139.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 9.6e-17
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 195 LPSVAVGG----GGAVECVICKEEMNEGREACQLPCEHLFHWLCILPWLRKRNTCPCCRF 254
           LP V + G     G + C +CK+EMN G +A QLPC H +H  CI+PWL+ RNTCP CR+
Sbjct: 292 LPVVLLEGENDDDGGLVCAVCKDEMNIGNKAVQLPCNHKYHSECIVPWLKVRNTCPVCRY 351

Query: 255 QLPTDD 257
           +LPTDD
Sbjct: 352 ELPTDD 357

[Close]

BLAST of Tan0020643 vs. TAIR 10
Match: AT5G60820.1 (RING/U-box superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 9.0e-15
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 205 AVECVICKEEMNEGREACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTD 256
           AV C +CKEEM  G+E  +LPC H +H  CI+PWL  RNTCP CRF+LP+D
Sbjct: 369 AVCCAVCKEEMIVGKEVAELPCRHKYHSECIVPWLGIRNTCPVCRFELPSD 419

[Close]

BLAST of Tan0020643 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 5.8e-14
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 187 ASPVAVVELPSVAVG----GGGAVECVICKEEMNEGREACQLPCEHLFHWLCILPWLRKR 246
           AS  A+  LP+V V          +C +C +E  +G +  Q+PC+H+FH  C+LPWL   
Sbjct: 191 ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELH 250

Query: 247 NTCPCCRFQLPTDD 257
           N+CP CRF+LPTDD
Sbjct: 251 NSCPVCRFELPTDD 264

[Close]

BLAST of Tan0020643 vs. TAIR 10
Match: AT3G02340.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 9.9e-14
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 192 VVELPSVAVGGGGAVECVICKEEMNEGREACQLPCEHLFHWLCILPWLRKRNTCPCCRFQ 251
           VVEL    +  G  V C +CK+EM    +  +LPC H +H  CI+PWL  RNTCP CR++
Sbjct: 320 VVELAVEELDKGNNV-CAVCKDEMLVEEKVRRLPCSHFYHGECIIPWLGIRNTCPVCRYE 379

Query: 252 LPTDDI 258
           LPTDD+
Sbjct: 380 LPTDDL 384

The following BLAST results are available for this feature:

BLAST of Tan0020643 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GXF8	5.1e-71	54.51	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q6GPV5	9.7e-14	52.78	E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1	[more]
Q9VE61	1.7e-13	48.15	E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN...	[more]
Q9P0P0	1.7e-13	47.89	E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1	[more]
Q3T0W3	2.2e-13	49.30	E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1	[more]

BLAST of Tan0020643 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596438.1	9.3e-139	90.00	E3 ubiquitin-protein ligase SGR9, amyloplastic, partial [Cucurbita argyrosperma ...	[more]
XP_022935892.1	7.9e-138	89.64	E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucurbita moschata]	[more]
XP_023005737.1	6.7e-137	88.21	E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucurbita maxima]	[more]
XP_023538929.1	6.7e-137	88.93	E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucurbita pepo subsp. pepo]	[more]
KAG7027979.1	1.8e-134	90.37	E3 ubiquitin-protein ligase SGR9, amyloplastic, partial [Cucurbita argyrosperma ...	[more]

BLAST of Tan0020643 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6V7	3.8e-138	89.64	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KTZ6	3.2e-137	88.21	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0LAQ3	4.1e-132	84.15	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736610 P...	[more]
A0A1S4DUS9	9.1e-132	83.80	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1CX45	3.5e-131	84.10	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Tan0020643 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02750.1	3.6e-72	54.51	RING/U-box superfamily protein	[more]
AT5G08139.1	9.6e-17	54.55	RING/U-box superfamily protein	[more]
AT5G60820.1	9.0e-15	60.78	RING/U-box superfamily protein	[more]
AT3G19950.1	5.8e-14	44.59	RING/U-box superfamily protein	[more]
AT3G02340.1	9.9e-14	50.00	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 208..248 e-value: 8.2E-6 score: 35.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 207..249 e-value: 5.9E-11 score: 42.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 208..249 score: 12.149959
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 202..259 e-value: 1.2E-17 score: 64.9
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 1..273
None	No IPR available	PANTHER	PTHR15710:SF67	E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC	coord: 1..273
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 203..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020643.1	Tan0020643.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009630	gravitropism
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0009501	amyloplast
molecular_function	GO:0061630	ubiquitin protein ligase activity