Tan0020535 (gene) Snake gourd v1

Overview
NameTan0020535
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationLG05: 71097160 .. 71097801 (+)
RNA-Seq ExpressionTan0020535
SyntenyTan0020535
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAACGCCTCGTCTGAATTTTTCCTGTCTTCTATCGGAGCACCTCACTTCAGCAGTCCTCCGTTAAATCAACTACTTAACCAGGTAACTTCGATAAAATTAGAGAGGGGAAACTTTCTACTGTGGAAGAATTTAGCTCTTTCCATCCTTCGGAGCTACAAACTCAAATGCCATCTCCTTGGGACCAAAGCTTGCCCAACCATGTTTCTACCTCAAGGATCTACCGAAGGAATTACAATTTCTGAAAGAGCATCCTCCTCAAGCTCAGAGCCATCGACTGTGATCAATCCACTGTATGAGTCTTGGGTCACTGTAGATCAGTTACTTGTCGGTTGGTTGTACAACTCCATGTCGTTAGAGGTAGCTACTCAGGTAATGGGGTGCAACATAACTAAAGACCTTTGGGATGCCATTCAAACCTTGTTTGGGGTCCAGTCCAGAGTTGAAGAGGATTTTCTGCGTCAAGTCTTCCAACAGACACGCAAAGGTAATATGAAAATGTCAGAATACTTACGAATCATGAAATGTCATGTTGAAAGTCTTGGTCAAGCAGGGAGTCCAGTGCCCACTAGGTCTCTAATTTCGCAGGTTCTACTTGGATTAGATGAAGAATACAACCCTATTATTGTTGGAATATAA

mRNA sequence

ATGGCCAACGCCTCGTCTGAATTTTTCCTGTCTTCTATCGGAGCACCTCACTTCAGCAGTCCTCCGTTAAATCAACTACTTAACCAGGTAACTTCGATAAAATTAGAGAGGGGAAACTTTCTACTGTGGAAGAATTTAGCTCTTTCCATCCTTCGGAGCTACAAACTCAAATGCCATCTCCTTGGGACCAAAGCTTGCCCAACCATGTTTCTACCTCAAGGATCTACCGAAGGAATTACAATTTCTGAAAGAGCATCCTCCTCAAGCTCAGAGCCATCGACTGTGATCAATCCACTGTATGAGTCTTGGGTAATGGGGTGCAACATAACTAAAGACCTTTGGGATGCCATTCAAACCTTGTTTGGGGTCCAGTCCAGAGTTGAAGAGGATTTTCTGCGTCAAGTCTTCCAACAGACACGCAAAGGTAATATGAAAATGTCAGAATACTTACGAATCATGAAATGTCATGTTGAAAGTCTTGGTCAAGCAGGGAGTCCAGTGCCCACTAGGTCTCTAATTTCGCAGGTTCTACTTGGATTAGATGAAGAATACAACCCTATTATTGTTGGAATATAA

Coding sequence (CDS)

ATGGCCAACGCCTCGTCTGAATTTTTCCTGTCTTCTATCGGAGCACCTCACTTCAGCAGTCCTCCGTTAAATCAACTACTTAACCAGGTAACTTCGATAAAATTAGAGAGGGGAAACTTTCTACTGTGGAAGAATTTAGCTCTTTCCATCCTTCGGAGCTACAAACTCAAATGCCATCTCCTTGGGACCAAAGCTTGCCCAACCATGTTTCTACCTCAAGGATCTACCGAAGGAATTACAATTTCTGAAAGAGCATCCTCCTCAAGCTCAGAGCCATCGACTGTGATCAATCCACTGTATGAGTCTTGGGTAATGGGGTGCAACATAACTAAAGACCTTTGGGATGCCATTCAAACCTTGTTTGGGGTCCAGTCCAGAGTTGAAGAGGATTTTCTGCGTCAAGTCTTCCAACAGACACGCAAAGGTAATATGAAAATGTCAGAATACTTACGAATCATGAAATGTCATGTTGAAAGTCTTGGTCAAGCAGGGAGTCCAGTGCCCACTAGGTCTCTAATTTCGCAGGTTCTACTTGGATTAGATGAAGAATACAACCCTATTATTGTTGGAATATAA

Protein sequence

MANASSEFFLSSIGAPHFSSPPLNQLLNQVTSIKLERGNFLLWKNLALSILRSYKLKCHLLGTKACPTMFLPQGSTEGITISERASSSSSEPSTVINPLYESWVMGCNITKDLWDAIQTLFGVQSRVEEDFLRQVFQQTRKGNMKMSEYLRIMKCHVESLGQAGSPVPTRSLISQVLLGLDEEYNPIIVGI
Homology
BLAST of Tan0020535 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-46
Identity = 108/218 (49.54%), Postives = 137/218 (62.84%), Query Frame = 0

Query: 1   MANASSEFFLSSIGAPHFSSPPLNQLLNQVTSIKLERGNFLLWKNLALSILRSYKLKCHL 60
           MANA       S+ +  FS+PPLNQ+LNQ+ ++KL+R N+LLWK LAL IL+ YKL+ HL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHL 60

Query: 61  LGTKACPTMFLPQGSTEGITISERAS-----SSSSEPSTVINPLYESWV----------- 120
            G   CP+ F+   S+   T++E  +     +SSS    ++N L+E WV           
Sbjct: 61  TGETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLY 120

Query: 121 -----------MGCNITKDLWDAIQTLFGVQSRVEEDFLRQVFQQTRKGNMKMSEYLRIM 180
                      MG    +DLWDA Q  FGVQSR EEDFLRQ+ Q TRKGN KM EYL +M
Sbjct: 121 NSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVM 180

Query: 181 KCHVESLGQAGSPVPTRSLISQVLLGLDEEYNPIIVGI 192
           K +V++LGQ GSPVP R+LISQVLLGLDE YN +IV I
Sbjct: 181 KTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVI 218

BLAST of Tan0020535 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 192.2 bits (487), Expect = 4.1e-45
Identity = 103/197 (52.28%), Postives = 132/197 (67.01%), Query Frame = 0

Query: 18  FSSPPLNQLLNQVTSIKLERGNFLLWKNLALSILRSYKLKCHLLGTKAC-PTMFLPQGST 77
           F+SPPLNQLLNQ+TSIK++RGNFLLW+NLAL ILRSYKL  +L G K C PT  +P  + 
Sbjct: 22  FTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHLVPTDTP 81

Query: 78  EGITISERASSSSSEPSTVINPLYESW----------------------VMGCNITKDLW 137
             I       S+SS+ S  +NP YE+W                      VMG + +++LW
Sbjct: 82  TNI-----EGSTSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTSRELW 141

Query: 138 DAIQTLFGVQSRVEEDFLRQVFQQTRKGNMKMSEYLRIMKCHVESLGQAGSPVPTRSLIS 192
            A+Q LFGVQSR E D+L+QVFQQT KG+++M EYL++MK H ++L  AGS V  R L+S
Sbjct: 142 TAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVRDLVS 201

BLAST of Tan0020535 vs. NCBI nr
Match: TYJ96311.1 (uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 3.1e-40
Identity = 96/202 (47.52%), Postives = 124/202 (61.39%), Query Frame = 0

Query: 1   MANASSEFFLSSIGAPHFSSPPLNQLLNQVTSIKLERGNFLLWKNLALSILRSYKLKCHL 60
           MANA       S+ +  FS+PPLNQ+LNQ+ ++KL+R N+LLWK LAL IL+ YKL+ HL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHL 60

Query: 61  LGTKACPTMFLPQGSTEGITISERAS-----SSSSEPSTVINPLYESWV----------- 120
            G   CP+ F+   S+   T++E  +     +SSS    ++N L+E WV           
Sbjct: 61  TGETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLY 120

Query: 121 -----------MGCNITKDLWDAIQTLFGVQSRVEEDFLRQVFQQTRKGNMKMSEYLRIM 176
                      MG    +DLWDA Q  FGVQSR EEDFLRQ+ Q TRKGN KM EYL +M
Sbjct: 121 NSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVM 180

BLAST of Tan0020535 vs. NCBI nr
Match: XP_038902487.1 (uncharacterized protein LOC120089143 [Benincasa hispida])

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-35
Identity = 96/204 (47.06%), Postives = 122/204 (59.80%), Query Frame = 0

Query: 31  TSIKLERGNFLLWKNLALSILRSYKLKCHLLGTKACPTMF----------LPQGSTEGI- 90
           T+IKL++ N+LLW+NLAL ILRSY+L+ HL G   CP  F          +P G   G+ 
Sbjct: 43  TTIKLDQENYLLWRNLALPILRSYRLEGHLTGEDPCPPRFSVATDQSTATVPPGDEAGLG 102

Query: 91  -------TISER---ASSSSSEPSTVINPLYES----------W------------VMGC 150
                  +++ +    ++S+S P   +NP YES          W            VMG 
Sbjct: 103 GQYSGIASLTPQQGITTASNSSPVLQVNPFYESRTVVDQLLLGWLYNFMTAEVAMQVMGY 162

Query: 151 NITKDLWDAIQTLFGVQSRVEEDFLRQVFQQTRKGNMKMSEYLRIMKCHVESLGQAGSPV 192
              K LW AIQ LFG+QSR  ED+LRQVFQQT KG MKM EYLR+MK H ++LG  GSPV
Sbjct: 163 ENYKYLWAAIQELFGLQSRAGEDYLRQVFQQTCKGAMKMPEYLRVMKTHSDNLGLTGSPV 222

BLAST of Tan0020535 vs. NCBI nr
Match: KAA0067279.1 (uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 3.6e-33
Identity = 85/185 (45.95%), Postives = 110/185 (59.46%), Query Frame = 0

Query: 18  FSSPPLNQLLNQVTSIKLERGNFLLWKNLALSILRSYKLKCHLLGTKACPTMFLPQGSTE 77
           F++P LNQ+LNQ+T+IKL+RGN+LLWK LAL IL+SYKL  HL G   C    +   +  
Sbjct: 17  FTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLPKIIMLTTQP 76

Query: 78  GITISERA------SSSSSEPSTVINPLYESWV----------------------MGCNI 137
             +I E A      +SSSS     +NP YE W+                      MG   
Sbjct: 77  NESIVENAGEPSQETSSSSTAVVTVNPKYERWITTDLLLLGWLYNSMTPEVTIQLMGFTN 136

Query: 138 TKDLWDAIQTLFGVQSRVEEDFLRQVFQQTRKGNMKMSEYLRIMKCHVESLGQAGSPVPT 175
            KDLW+A Q LFG+QSR +EDFL Q FQ T+KGN+ M EYLR MK +V +LGQA S VP+
Sbjct: 137 AKDLWEATQDLFGIQSRAKEDFLHQTFQTTKKGNLNMEEYLRTMKNNVNNLGQADSLVPS 196

BLAST of Tan0020535 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 108/218 (49.54%), Postives = 137/218 (62.84%), Query Frame = 0

Query: 1   MANASSEFFLSSIGAPHFSSPPLNQLLNQVTSIKLERGNFLLWKNLALSILRSYKLKCHL 60
           MANA       S+ +  FS+PPLNQ+LNQ+ ++KL+R N+LLWK LAL IL+ YKL+ HL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHL 60

Query: 61  LGTKACPTMFLPQGSTEGITISERAS-----SSSSEPSTVINPLYESWV----------- 120
            G   CP+ F+   S+   T++E  +     +SSS    ++N L+E WV           
Sbjct: 61  TGETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLY 120

Query: 121 -----------MGCNITKDLWDAIQTLFGVQSRVEEDFLRQVFQQTRKGNMKMSEYLRIM 180
                      MG    +DLWDA Q  FGVQSR EEDFLRQ+ Q TRKGN KM EYL +M
Sbjct: 121 NSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVM 180

Query: 181 KCHVESLGQAGSPVPTRSLISQVLLGLDEEYNPIIVGI 192
           K +V++LGQ GSPVP R+LISQVLLGLDE YN +IV I
Sbjct: 181 KTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVI 218

BLAST of Tan0020535 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.0e-45
Identity = 103/197 (52.28%), Postives = 132/197 (67.01%), Query Frame = 0

Query: 18  FSSPPLNQLLNQVTSIKLERGNFLLWKNLALSILRSYKLKCHLLGTKAC-PTMFLPQGST 77
           F+SPPLNQLLNQ+TSIK++RGNFLLW+NLAL ILRSYKL  +L G K C PT  +P  + 
Sbjct: 22  FTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHLVPTDTP 81

Query: 78  EGITISERASSSSSEPSTVINPLYESW----------------------VMGCNITKDLW 137
             I       S+SS+ S  +NP YE+W                      VMG + +++LW
Sbjct: 82  TNI-----EGSTSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTSRELW 141

Query: 138 DAIQTLFGVQSRVEEDFLRQVFQQTRKGNMKMSEYLRIMKCHVESLGQAGSPVPTRSLIS 192
            A+Q LFGVQSR E D+L+QVFQQT KG+++M EYL++MK H ++L  AGS V  R L+S
Sbjct: 142 TAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVRDLVS 201

BLAST of Tan0020535 vs. ExPASy TrEMBL
Match: A0A5D3BCH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00140 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.5e-40
Identity = 96/202 (47.52%), Postives = 124/202 (61.39%), Query Frame = 0

Query: 1   MANASSEFFLSSIGAPHFSSPPLNQLLNQVTSIKLERGNFLLWKNLALSILRSYKLKCHL 60
           MANA       S+ +  FS+PPLNQ+LNQ+ ++KL+R N+LLWK LAL IL+ YKL+ HL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHL 60

Query: 61  LGTKACPTMFLPQGSTEGITISERAS-----SSSSEPSTVINPLYESWV----------- 120
            G   CP+ F+   S+   T++E  +     +SSS    ++N L+E WV           
Sbjct: 61  TGETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLY 120

Query: 121 -----------MGCNITKDLWDAIQTLFGVQSRVEEDFLRQVFQQTRKGNMKMSEYLRIM 176
                      MG    +DLWDA Q  FGVQSR EEDFLRQ+ Q TRKGN KM EYL +M
Sbjct: 121 NSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVM 180

BLAST of Tan0020535 vs. ExPASy TrEMBL
Match: A0A5A7VPY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001000 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.8e-33
Identity = 85/185 (45.95%), Postives = 110/185 (59.46%), Query Frame = 0

Query: 18  FSSPPLNQLLNQVTSIKLERGNFLLWKNLALSILRSYKLKCHLLGTKACPTMFLPQGSTE 77
           F++P LNQ+LNQ+T+IKL+RGN+LLWK LAL IL+SYKL  HL G   C    +   +  
Sbjct: 17  FTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLPKIIMLTTQP 76

Query: 78  GITISERA------SSSSSEPSTVINPLYESWV----------------------MGCNI 137
             +I E A      +SSSS     +NP YE W+                      MG   
Sbjct: 77  NESIVENAGEPSQETSSSSTAVVTVNPKYERWITTDLLLLGWLYNSMTPEVTIQLMGFTN 136

Query: 138 TKDLWDAIQTLFGVQSRVEEDFLRQVFQQTRKGNMKMSEYLRIMKCHVESLGQAGSPVPT 175
            KDLW+A Q LFG+QSR +EDFL Q FQ T+KGN+ M EYLR MK +V +LGQA S VP+
Sbjct: 137 AKDLWEATQDLFGIQSRAKEDFLHQTFQTTKKGNLNMEEYLRTMKNNVNNLGQADSLVPS 196

BLAST of Tan0020535 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.2e-31
Identity = 76/128 (59.38%), Postives = 88/128 (68.75%), Query Frame = 0

Query: 86  SSSSSEPSTVINPLYESW----------------------VMGCNITKDLWDAIQTLFGV 145
           SSSS      INPLYESW                      VMG     DLW AIQ LFGV
Sbjct: 21  SSSSIATEAAINPLYESWVTTDQLLLGWLYNSMTPEVATQVMGYENACDLWAAIQELFGV 80

Query: 146 QSRVEEDFLRQVFQQTRKGNMKMSEYLRIMKCHVESLGQAGSPVPTRSLISQVLLGLDEE 192
           QS+ EED+LRQVFQQTRKG++KM+++LR+MK H ++LGQAGSPVPTRSLISQVLLGLDEE
Sbjct: 81  QSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEE 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0026100.12.2e-4649.54uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa][more]
XP_022151683.14.1e-4552.28uncharacterized protein LOC111019598 [Momordica charantia][more]
TYJ96311.13.1e-4047.52uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa][more]
XP_038902487.11.0e-3547.06uncharacterized protein LOC120089143 [Benincasa hispida][more]
KAA0067279.13.6e-3345.95uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5A7SIT71.1e-4649.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6J1DCW42.0e-4552.28uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A5D3BCH91.5e-4047.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VPY01.8e-3345.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6J1D5J06.2e-3159.38uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0020535.1Tan0020535.1mRNA