Tan0020513 (gene) Snake gourd v1

Overview


Name	Tan0020513
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protodermal factor 1-like isoform X1
Location	LG05: 38642026 .. 38643102 (+)
RNA-Seq Expression	Tan0020513
Synteny	Tan0020513

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGTAAGCACATCTATTTCTTTCTTTCTCTAGTTTTTAAATCTCTCTTTCTTTGTAATTATATTCTTACGTTAATTAAATAAACAGGGGACAAGTTCTTTTGGTTAAGAGATGAAGAATTTGCAAGACAAACTCTTGCTGGCCTTAACCCATACAACATTCAATTAGTCAAGGTATATAGGATACATAACTTATCTGGTTTAGTTTGGGATTATTGTGTTCTGTTCATTTAATATATGAATTTAGATGTATCCTATAGTTTTTTGCTTCAAACTTGTTGCTTTTAGATTTCATTGTTATCTAGGTGGACTTAATTCTTTTTAAATATGTAAGATCGAGTGGAGAAAATATGAACCTTTAACCTTGGTTGAACATTTTTTTGCTTCAAACTTTTTGCTTTTAGGTTTCATGGGTCGGTCTGCCATGAAAATATTTCTGTAGTCTAAAACAATGTGCTAGTACATGTACCTCTCCATCTTCTAGGCAAAGGAGCTCAGGAAAGATGCACTCATCTCATTCTCAAACACATATTAGATCTCAGCAAGTAGCTAATGCAATAAAAGTAAGAGATTCTGAATGTGGTTGTTTGTTTGTTTGATTGTTTTTTCCTTTTGTTCAATACAACTTAATTATTTGGTTGTTCCATAAAAATGGTTGTGCTTTATCCCAATTGGCAATCTAGCTCCTTGGAAAATGCCATTTCTATTTTCAAGGATTAATTACCTATGGTTCCGAAATATCTTATTGTGTTGAGATATTCCTGACCGCTTACCCACATTGAAATTTGTATAACTATATGTTTTAAGATAGATGGAAGATTCTAAAGGACGTGGTGGTGTCAAAAAGTGGCTAGAATTATTCAAATCAGTGACAATGTCCATACCTTATTTTTCTTTTACTCATCCAGTATTTTCCTCTTTGTAGGTTCGCAAGGGAGTCCATCTTATGGGACTATACCACCACCATATGGTTCGGGAGGAAGCCATGGAGGAAAACCACCTTCTCATGGACATGGTGGTAAAAAACACAGTCCAAAACCAGGGAAATGCGGAAACCCGGTTACCTCTTATTAG

mRNA sequence

ATGGACAGTTCGCAAGGGAGTCCATCTTATGGGACTATACCACCACCATATGGTTCGGGAGGAAGCCATGGAGGAAAACCACCTTCTCATGGACATGGTGGTAAAAAACACAGTCCAAAACCAGGGAAATGCGGAAACCCGGTTACCTCTTATTAG

Coding sequence (CDS)

ATGGACAGTTCGCAAGGGAGTCCATCTTATGGGACTATACCACCACCATATGGTTCGGGAGGAAGCCATGGAGGAAAACCACCTTCTCATGGACATGGTGGTAAAAAACACAGTCCAAAACCAGGGAAATGCGGAAACCCGGTTACCTCTTATTAG

Protein sequence

MDSSQGSPSYGTIPPPYGSGGSHGGKPPSHGHGGKKHSPKPGKCGNPVTSY

Homology

[Close]

BLAST of Tan0020513 vs. NCBI nr
Match: XP_038888912.1 (protodermal factor 1-like [Benincasa hispida])

HSP 1 Score: 80.5 bits (197), Expect = 4.7e-12
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 4  SQGSPSYGTIPPPYGSGGSHGGKPPSHGHGGKKHSPKPGKCGNP 48
          SQGSP YGT PPP GSGGSHGGKPPSHGHGGKKH+PKPGKCGNP
Sbjct: 54 SQGSPPYGT-PPPRGSGGSHGGKPPSHGHGGKKHNPKPGKCGNP 96

[Close]

BLAST of Tan0020513 vs. NCBI nr
Match: XP_023530945.1 (protodermal factor 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.1 bits (196), Expect = 6.1e-12
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 3  SSQGSPSYGTIPPPYGSGGSHGGKPPSHGHGGKKHSPKPGKCGNP 48
          SS GSP YGT PPP GSGGSHGGKPPSHGHGGKK SPKPG CGNP
Sbjct: 54 SSPGSPPYGTTPPPDGSGGSHGGKPPSHGHGGKKRSPKPGNCGNP 98

[Close]

BLAST of Tan0020513 vs. NCBI nr
Match: XP_023530946.1 (protodermal factor 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.1 bits (196), Expect = 6.1e-12
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 3  SSQGSPSYGTIPPPYGSGGSHGGKPPSHGHGGKKHSPKPGKCGNP 48
          SS GSP YGT PPP GSGGSHGGKPPSHGHGGKK SPKPG CGNP
Sbjct: 54 SSPGSPPYGTTPPPDGSGGSHGGKPPSHGHGGKKRSPKPGNCGNP 98

[Close]

BLAST of Tan0020513 vs. NCBI nr
Match: KAG6589294.1 (Protodermal factor 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.1 bits (196), Expect = 6.1e-12
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 3  SSQGSPSYGTIPPPYGSGGSHGGKPPSHGHGGKKHSPKPGKCGNP 48
          SS GSP YGT PPP GSGGSHGGKPPSHGHGGKK SPKPG CGNP
Sbjct: 51 SSPGSPPYGTTPPPDGSGGSHGGKPPSHGHGGKKRSPKPGNCGNP 95

[Close]

BLAST of Tan0020513 vs. NCBI nr
Match: XP_022989188.1 (leucine-rich repeat extensin-like protein 5 isoform X2 [Cucurbita maxima])

HSP 1 Score: 80.1 bits (196), Expect = 6.1e-12
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 3  SSQGSPSYGTIPPPYGSGGSHGGKPPSHGHGGKKHSPKPGKCGNP 48
          SS GSP YGT PPP GSGGSHGGKPPSHGHGGKK SPKPG CGNP
Sbjct: 54 SSPGSPPYGTTPPPDGSGGSHGGKPPSHGHGGKKRSPKPGNCGNP 98

[Close]

BLAST of Tan0020513 vs. ExPASy TrEMBL
Match: A0A6J1JNN6 (protodermal factor 1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111486335 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-12
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 3  SSQGSPSYGTIPPPYGSGGSHGGKPPSHGHGGKKHSPKPGKCGNP 48
          SS GSP YGT PPP GSGGSHGGKPPSHGHGGKK SPKPG CGNP
Sbjct: 54 SSPGSPPYGTTPPPDGSGGSHGGKPPSHGHGGKKRSPKPGNCGNP 98

[Close]

BLAST of Tan0020513 vs. ExPASy TrEMBL
Match: A0A6J1JF43 (protodermal factor 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486335 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-12
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 3  SSQGSPSYGTIPPPYGSGGSHGGKPPSHGHGGKKHSPKPGKCGNP 48
          SS GSP YGT PPP GSGGSHGGKPPSHGHGGKK SPKPG CGNP
Sbjct: 54 SSPGSPPYGTTPPPDGSGGSHGGKPPSHGHGGKKRSPKPGNCGNP 98

[Close]

BLAST of Tan0020513 vs. ExPASy TrEMBL
Match: A0A6J1JPJ4 (leucine-rich repeat extensin-like protein 5 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486335 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-12
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 3  SSQGSPSYGTIPPPYGSGGSHGGKPPSHGHGGKKHSPKPGKCGNP 48
          SS GSP YGT PPP GSGGSHGGKPPSHGHGGKK SPKPG CGNP
Sbjct: 54 SSPGSPPYGTTPPPDGSGGSHGGKPPSHGHGGKKRSPKPGNCGNP 98

[Close]

BLAST of Tan0020513 vs. ExPASy TrEMBL
Match: A0A6J1ER90 (protodermal factor 1-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111437076 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.6e-12
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 3  SSQGSPSYGTIPPPYGSGGSHGGKPPSHGHGGKKHSPKPGKCGNP 48
          SS GSP YGT PPP GSGGSHGGKPP+HGHGGKK SPKPG CGNP
Sbjct: 54 SSPGSPPYGTTPPPDGSGGSHGGKPPTHGHGGKKRSPKPGNCGNP 98

[Close]

BLAST of Tan0020513 vs. ExPASy TrEMBL
Match: A0A6J1ES52 (protodermal factor 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437076 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.6e-12
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 3  SSQGSPSYGTIPPPYGSGGSHGGKPPSHGHGGKKHSPKPGKCGNP 48
          SS GSP YGT PPP GSGGSHGGKPP+HGHGGKK SPKPG CGNP
Sbjct: 54 SSPGSPPYGTTPPPDGSGGSHGGKPPTHGHGGKKRSPKPGNCGNP 98

The following BLAST results are available for this feature:

BLAST of Tan0020513 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0020513 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888912.1	4.7e-12	90.91	protodermal factor 1-like [Benincasa hispida]	[more]
XP_023530945.1	6.1e-12	86.67	protodermal factor 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023530946.1	6.1e-12	86.67	protodermal factor 1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KAG6589294.1	6.1e-12	86.67	Protodermal factor 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022989188.1	6.1e-12	86.67	leucine-rich repeat extensin-like protein 5 isoform X2 [Cucurbita maxima]	[more]

BLAST of Tan0020513 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JNN6	2.9e-12	86.67	protodermal factor 1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111486335...	[more]
A0A6J1JF43	2.9e-12	86.67	protodermal factor 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486335...	[more]
A0A6J1JPJ4	2.9e-12	86.67	leucine-rich repeat extensin-like protein 5 isoform X2 OS=Cucurbita maxima OX=36...	[more]
A0A6J1ER90	6.6e-12	84.44	protodermal factor 1-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A6J1ES52	6.6e-12	84.44	protodermal factor 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]

BLAST of Tan0020513 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020513.1	Tan0020513.1	mRNA