Tan0020512 (gene) Snake gourd v1

Overview
NameTan0020512
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
LocationLG07: 28478948 .. 28479265 (-)
RNA-Seq ExpressionTan0020512
SyntenyTan0020512
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCAAAGGAAGTTACATCAACTGTTGCTGCTGCAAGCAACATCTACATGGGGCCGATAACTCGTAGTCGTTCCAAAGGGGTCGAGACAAGCGATGATCGAACTCCTGATGCAGTGGCAAACCACCTCACCAAATTACTGAATGAAGCTTCCAAAGCTAAGATTGTCATCAAAGACAACCCCTTGTTTGACCAATCAGCTCCTGCTCCAAATCCATTGAAGGAGACGCTAAATCAAGATATAATGTCAGTCATGATGGCTGATGTAGACCCTGATGAAAGTATGGCGGAAGTGGAGAAAAAATCAATCTCCTGA

mRNA sequence

ATGCAATCAAAGGAAGTTACATCAACTGTTGCTGCTGCAAGCAACATCTACATGGGGCCGATAACTCGTAGTCGTTCCAAAGGGGTCGAGACAAGCGATGATCGAACTCCTGATGCAGTGGCAAACCACCTCACCAAATTACTGAATGAAGCTTCCAAAGCTAAGATTGTCATCAAAGACAACCCCTTGTTTGACCAATCAGCTCCTGCTCCAAATCCATTGAAGGAGACGCTAAATCAAGATATAATGTCAGTCATGATGGCTGATGTAGACCCTGATGAAAGTATGGCGGAAGTGGAGAAAAAATCAATCTCCTGA

Coding sequence (CDS)

ATGCAATCAAAGGAAGTTACATCAACTGTTGCTGCTGCAAGCAACATCTACATGGGGCCGATAACTCGTAGTCGTTCCAAAGGGGTCGAGACAAGCGATGATCGAACTCCTGATGCAGTGGCAAACCACCTCACCAAATTACTGAATGAAGCTTCCAAAGCTAAGATTGTCATCAAAGACAACCCCTTGTTTGACCAATCAGCTCCTGCTCCAAATCCATTGAAGGAGACGCTAAATCAAGATATAATGTCAGTCATGATGGCTGATGTAGACCCTGATGAAAGTATGGCGGAAGTGGAGAAAAAATCAATCTCCTGA

Protein sequence

MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKDNPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVEKKSIS
Homology
[Close]
BLAST of Tan0020512 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 0 

Query: 1   MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKD 60
           M SK+  S  + ASN Y GPITRSRSKG+    D+  + VA  + K L E+ KA IVIK+
Sbjct: 1   MASKKAASNSSVASNAYTGPITRSRSKGITQEQDQGSN-VAQSILKQLMESLKAGIVIKE 60

Query: 61  NPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVEKK 103
           NPL+D S  + +  K+  + D+MSVMMAD+ P+ +MAE+E+K
Sbjct: 61  NPLYDNSDSSSSKSKKETHPDVMSVMMADITPEAAMAEMERK 101

[Close]
BLAST of Tan0020512 vs. NCBI nr
Match: KAA0054593.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27557.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 0 

Query: 1   MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKD 60
           M SK+V S    AS+ Y GPITRSRSKG+    D+  + V + L +L+ E+ KA IVIK 
Sbjct: 1   MASKKVASNSYVASDAYTGPITRSRSKGIIQEQDQDSNVVQSILKQLM-ESPKAGIVIKK 60

Query: 61  NPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVEKK 103
           NPL+D S  A +  K+  + D+MSVMMAD+  + +MAE+EKK
Sbjct: 61  NPLYDNSDLASSMSKKKAHPDVMSVMMADITVEAAMAEMEKK 101

[Close]
BLAST of Tan0020512 vs. NCBI nr
Match: TYK05006.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-12
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 0 

Query: 1   MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKD 60
           M SK+  S  + A++ Y GPITRSR KG+    D+  + VA  + K L E+ KA IVIK+
Sbjct: 92  MASKKAASDSSVANDAYTGPITRSRFKGIIQEQDQGSN-VAQSILKQLMESPKAGIVIKE 151

Query: 61  NPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVEKK 103
           NPL+D S  A +  K+  + D+MSVMMAD+  + SMAE+E+K
Sbjct: 152 NPLYDNSDSASSKSKKEAHPDVMSVMMADITTEASMAEMERK 192

[Close]
BLAST of Tan0020512 vs. NCBI nr
Match: KAA0032586.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK20899.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 4.3e-12
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 0 

Query: 1   MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKD 60
           M SK+  S  + AS+ Y GPITRSRSKG+    D+  + VA  + K L E+ K+ IVIK+
Sbjct: 1   MASKKDASNSSVASDAYTGPITRSRSKGIIQEQDQGSN-VAQSILKKLMESPKSGIVIKE 60

Query: 61  NPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVEKK 103
           NPL+D S  A +  K+  + D+MSVMMAD+    +MAE+E+K
Sbjct: 61  NPLYDNSNSASSKSKKEAHPDVMSVMMADITAKAAMAEMERK 101

[Close]
BLAST of Tan0020512 vs. NCBI nr
Match: TYK28164.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 5.6e-12
Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = 0 

Query: 1   MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKD 60
           M SK+V S  + AS+ Y GPIT SR KG+    D+  + VA  + K L E+ KA IVIK+
Sbjct: 1   MASKKVASNSSVASDAYTGPITHSRFKGIIQEQDQGSN-VAQSILKQLMESLKAGIVIKE 60

Query: 61  NPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVEKK 103
           NPL+D S  A +  K+  + D+MS+MMAD+  + +MAE+E+K
Sbjct: 61  NPLYDNSDSASSKSKKEAHPDVMSIMMADITVEAAMAEMERK 101

[Close]
BLAST of Tan0020512 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 0 

Query: 1   MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKD 60
           M SK+  S  + ASN Y GPITRSRSKG+    D+  + VA  + K L E+ KA IVIK+
Sbjct: 1   MASKKAASNSSVASNAYTGPITRSRSKGITQEQDQGSN-VAQSILKQLMESLKAGIVIKE 60

Query: 61  NPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVEKK 103
           NPL+D S  + +  K+  + D+MSVMMAD+ P+ +MAE+E+K
Sbjct: 61  NPLYDNSDSSSSKSKKETHPDVMSVMMADITPEAAMAEMERK 101

[Close]
BLAST of Tan0020512 vs. ExPASy TrEMBL
Match: A0A5A7UF60 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00260 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.5e-13
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 0 

Query: 1   MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKD 60
           M SK+V S    AS+ Y GPITRSRSKG+    D+  + V + L +L+ E+ KA IVIK 
Sbjct: 1   MASKKVASNSYVASDAYTGPITRSRSKGIIQEQDQDSNVVQSILKQLM-ESPKAGIVIKK 60

Query: 61  NPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVEKK 103
           NPL+D S  A +  K+  + D+MSVMMAD+  + +MAE+EKK
Sbjct: 61  NPLYDNSDLASSMSKKKAHPDVMSVMMADITVEAAMAEMEKK 101

[Close]
BLAST of Tan0020512 vs. ExPASy TrEMBL
Match: A0A5D3C3J8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002370 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 0 

Query: 1   MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKD 60
           M SK+  S  + A++ Y GPITRSR KG+    D+  + VA  + K L E+ KA IVIK+
Sbjct: 92  MASKKAASDSSVANDAYTGPITRSRFKGIIQEQDQGSN-VAQSILKQLMESPKAGIVIKE 151

Query: 61  NPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVEKK 103
           NPL+D S  A +  K+  + D+MSVMMAD+  + SMAE+E+K
Sbjct: 152 NPLYDNSDSASSKSKKEAHPDVMSVMMADITTEASMAEMERK 192

[Close]
BLAST of Tan0020512 vs. ExPASy TrEMBL
Match: A0A5D3DC86 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00350 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 0 

Query: 1   MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKD 60
           M SK+  S  + AS+ Y GPITRSRSKG+    D+  + VA  + K L E+ K+ IVIK+
Sbjct: 1   MASKKDASNSSVASDAYTGPITRSRSKGIIQEQDQGSN-VAQSILKKLMESPKSGIVIKE 60

Query: 61  NPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVEKK 103
           NPL+D S  A +  K+  + D+MSVMMAD+    +MAE+E+K
Sbjct: 61  NPLYDNSNSASSKSKKEAHPDVMSVMMADITAKAAMAEMERK 101

[Close]
BLAST of Tan0020512 vs. ExPASy TrEMBL
Match: A0A5D3DXA8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00780 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-12
Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = 0 

Query: 1   MQSKEVTSTVAAASNIYMGPITRSRSKGVETSDDRTPDAVANHLTKLLNEASKAKIVIKD 60
           M SK+V S  + AS+ Y GPIT SR KG+    D+  + VA  + K L E+ KA IVIK+
Sbjct: 1   MASKKVASNSSVASDAYTGPITHSRFKGIIQEQDQGSN-VAQSILKQLMESLKAGIVIKE 60

Query: 61  NPLFDQSAPAPNPLKETLNQDIMSVMMADVDPDESMAEVEKK 103
           NPL+D S  A +  K+  + D+MS+MMAD+  + +MAE+E+K
Sbjct: 61  NPLYDNSDSASSKSKKEAHPDVMSIMMADITVEAAMAEMERK 101

The following BLAST results are available for this feature:
BLAST of Tan0020512 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0020512 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0061113.12.1e-1449.02ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp... [more]
KAA0054593.11.1e-1249.02ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27557.1 ty3-gyp... [more]
TYK05006.12.5e-1247.06ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0032586.14.3e-1247.06ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK20899.1 ty3-gyp... [more]
TYK28164.15.6e-1246.08ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Tan0020512 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BY541.0e-1449.02Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UF605.5e-1349.02Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3C3J81.2e-1247.06Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DC862.1e-1247.06Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DXA82.7e-1246.08Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of Tan0020512 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0020512.1Tan0020512.1mRNA