Tan0020488 (gene) Snake gourd v1

Overview


Name	Tan0020488
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	precursor of CEP12
Location	LG01: 105690763 .. 105691023 (-)
RNA-Seq Expression	Tan0020488
Synteny	Tan0020488

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCATAGAAGCTTATACGTGAACTTGTTTGCCCTTATCACTCTTATCATTTTTCTCCTTCATTTCCTCTCTGTAACATCACGGCCACTGACCACGGTGGCCGGTCCTGGCAATCGCCATGCAATATCACCTCCGGCTCCGGTGTCGATGTCGTTCTCGATAAATCGGTATAAATACGTCGAGATGGATGCTTTTCGGCCGACCTCGCCCGGGCACAGCCCCGGGGTTGGTCACAAGGATCCACCCGGTGCGCCGTAG

mRNA sequence

ATGGCTCATAGAAGCTTATACGTGAACTTGTTTGCCCTTATCACTCTTATCATTTTTCTCCTTCATTTCCTCTCTGTAACATCACGGCCACTGACCACGGTGGCCGGTCCTGGCAATCGCCATGCAATATCACCTCCGGCTCCGGTGTCGATGTCGTTCTCGATAAATCGGTATAAATACGTCGAGATGGATGCTTTTCGGCCGACCTCGCCCGGGCACAGCCCCGGGGTTGGTCACAAGGATCCACCCGGTGCGCCGTAG

Coding sequence (CDS)

ATGGCTCATAGAAGCTTATACGTGAACTTGTTTGCCCTTATCACTCTTATCATTTTTCTCCTTCATTTCCTCTCTGTAACATCACGGCCACTGACCACGGTGGCCGGTCCTGGCAATCGCCATGCAATATCACCTCCGGCTCCGGTGTCGATGTCGTTCTCGATAAATCGGTATAAATACGTCGAGATGGATGCTTTTCGGCCGACCTCGCCCGGGCACAGCCCCGGGGTTGGTCACAAGGATCCACCCGGTGCGCCGTAG

Protein sequence

MAHRSLYVNLFALITLIIFLLHFLSVTSRPLTTVAGPGNRHAISPPAPVSMSFSINRYKYVEMDAFRPTSPGHSPGVGHKDPPGAP

Homology

[Close]

BLAST of Tan0020488 vs. ExPASy Swiss-Prot
Match: P0DN99 (Precursor of CEP12 OS=Arabidopsis thaliana OX=3702 GN=CEP12 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 11 FALITLIIFLLHFLSVT-SRPLTTVAGPGNRHAISPPAPVSMS---FSINRYKYVEMDAF 70
          F ++ L++  LHF + T +R    V GP +    SPP+P       F IN YK +E  AF
Sbjct: 13 FFMLFLLVLHLHFETTTAARKPVRVFGPPSSIEWSPPSPPKDDFEWFEINIYKNIEQTAF 72

Query: 71 RPTSPGHSPGVGHKDPPGAP 87
          RPT  G S G+GHKDPPGAP
Sbjct: 73 RPTGQGPSQGIGHKDPPGAP 92

[Close]

BLAST of Tan0020488 vs. ExPASy Swiss-Prot
Match: Q3EBM6 (Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-06
Identity = 33/78 (42.31%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 13 LITLIIFLLHFLSVTSRPLTTVAGPGNRHAISPPAPVSMSF----SINRYKYVEMDAFRP 72
          LI L++  +HF +  +     V       + SPP P    F     INR+K +E DAFRP
Sbjct: 15 LIVLLVIQVHFENTKAARHAPVV------SWSPPEPPKDDFVWYHKINRFKNIEQDAFRP 74

Query: 73 TSPGHSPGVGHKDPPGAP 87
          T  G S G+GHK+PPGAP
Sbjct: 75 THQGPSQGIGHKNPPGAP 86

[Close]

BLAST of Tan0020488 vs. NCBI nr
Match: KAG6608019.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.9 bits (276), Expect = 5.4e-21
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 11 FALITLIIFLLHFLSVTSRPL------TTVAGPGNRHAISPPAPVSMSFSINRYKYVEMD 70
          F L+ L++FLL+FLSVTSRP         V G GNRHAI+PPA +S +FSINRYKYVEMD
Sbjct: 6  FHLLALVVFLLYFLSVTSRPRHDIYSPAIVVGFGNRHAITPPASMS-TFSINRYKYVEMD 65

Query: 71 AFRPTSPGHSPGVGHKDPPGA 86
          AFRPTSPGHSPGVGHKDPPGA
Sbjct: 66 AFRPTSPGHSPGVGHKDPPGA 85

[Close]

BLAST of Tan0020488 vs. NCBI nr
Match: KAG6591857.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-16
Identity = 59/95 (62.11%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 2  AHRSL-YVNLFALITLIIFLLHFLSVTSRPL----------TTVAGPGNRHAISPPAPVS 61
          A RSL ++NL  LITL   LLH LSVTSRPL                 + HAI PPAPVS
Sbjct: 3  ARRSLHFINLLPLITL---LLHSLSVTSRPLHGIDPLPSAAAMAVVSAHCHAILPPAPVS 62

Query: 62 -MSFSINRYKYVEMDAFRPTSPGHSPGVGHKDPPG 85
           ++FSINRYKYVE DAFRPT+PGHSPGVGH DPPG
Sbjct: 63 TLAFSINRYKYVETDAFRPTTPGHSPGVGHTDPPG 94

[Close]

BLAST of Tan0020488 vs. NCBI nr
Match: OAY29952.1 (hypothetical protein MANES_15G184800v8 [Manihot esculenta])

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 10 LFALITLIIFLLH----FLSVTSRPLTTVAGP-GNRHAISPPAPVS-MSFSINRYKYVEM 69
          LF+L+  ++ LLH         SR L     P  N+ ++  P P S + + INRYKY E 
Sbjct: 7  LFSLVAGVVILLHLQMDLAEAASRQLHIHPPPFPNKLSLRNPKPPSFILYGINRYKYTES 66

Query: 70 DAFRPTSPGHSPGVGHKDPPGAP 87
          +AFRPTSPGHSPGVGHKDPPGAP
Sbjct: 67 EAFRPTSPGHSPGVGHKDPPGAP 89

[Close]

BLAST of Tan0020488 vs. NCBI nr
Match: KAB9571943.1 (hypothetical protein FH972_027045 [Carpinus fangiana])

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-08
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 2  AHRSLYVNLFALITLIIFLLHFLSV-TSRPLTTVAGPGNRHAISPPAPVSMSFSINRYKY 61
          AHRS  +    ++ L++   +F SV  +RP            + P  P ++SFS+NRYK 
Sbjct: 3  AHRSFMLITLFMVILLLLQQNFGSVAAARP------------VKPKPPSTISFSVNRYKM 62

Query: 62 VEMDAFRPTSPGHSPGVGHKDPP 84
          +E DAFRPT+PGHSPGVGH+DPP
Sbjct: 63 IESDAFRPTTPGHSPGVGHRDPP 73

[Close]

BLAST of Tan0020488 vs. NCBI nr
Match: KAB5574551.1 (hypothetical protein DKX38_001745 [Salix brachista])

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-08
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 12 ALITLIIFLLH---FLSVTSRPL----TTVAGPGN-RHAISPPAPV--SMSFSINRYKYV 71
          A  T ++ LLH    L+  SRPL      + GPG+ R+   PPA +     + INRYK +
Sbjct: 11 AFFTAVLLLLHQHFDLTAASRPLDIHSPAIPGPGSLRYPKPPPADIVHDSWYRINRYKNM 70

Query: 72 EMDAFRPTSPGHSPGVGHKDPPGAP 87
          E DAFRPT+PGHSPGVGH++PP AP
Sbjct: 71 ESDAFRPTTPGHSPGVGHEEPPPAP 95

[Close]

BLAST of Tan0020488 vs. ExPASy TrEMBL
Match: A0A0A0KWX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.9e-19
Identity = 61/92 (66.30%), Postives = 70/92 (76.09%), Query Frame = 0


Query: 1  MAHRSLYVNLF---ALITLIIFLLHFLSVT-SRPLTTVAGPGNRHAISPPAPVSM--SFS 60
          MAHRSL++N F     + L++ LLH L VT SRPL  +  P N HAI+PPAPVS+  SFS
Sbjct: 1  MAHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGI-HPHNPHAITPPAPVSLETSFS 60

Query: 61 INRYKYVEMDAFRPTSPGHSPGVGHKDPPGAP 87
          INRYKYVE DAFRPTSPGHSPGVGH +PPG P
Sbjct: 61 INRYKYVETDAFRPTSPGHSPGVGHNEPPGKP 91

[Close]

BLAST of Tan0020488 vs. ExPASy TrEMBL
Match: A0A2C9UJ23 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G184800 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 10 LFALITLIIFLLH----FLSVTSRPLTTVAGP-GNRHAISPPAPVS-MSFSINRYKYVEM 69
          LF+L+  ++ LLH         SR L     P  N+ ++  P P S + + INRYKY E 
Sbjct: 7  LFSLVAGVVILLHLQMDLAEAASRQLHIHPPPFPNKLSLRNPKPPSFILYGINRYKYTES 66

Query: 70 DAFRPTSPGHSPGVGHKDPPGAP 87
          +AFRPTSPGHSPGVGHKDPPGAP
Sbjct: 67 EAFRPTSPGHSPGVGHKDPPGAP 89

[Close]

BLAST of Tan0020488 vs. ExPASy TrEMBL
Match: A0A5N6L638 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_027045 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.7e-09
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 2  AHRSLYVNLFALITLIIFLLHFLSV-TSRPLTTVAGPGNRHAISPPAPVSMSFSINRYKY 61
          AHRS  +    ++ L++   +F SV  +RP            + P  P ++SFS+NRYK 
Sbjct: 3  AHRSFMLITLFMVILLLLQQNFGSVAAARP------------VKPKPPSTISFSVNRYKM 62

Query: 62 VEMDAFRPTSPGHSPGVGHKDPP 84
          +E DAFRPT+PGHSPGVGH+DPP
Sbjct: 63 IESDAFRPTTPGHSPGVGHRDPP 73

[Close]

BLAST of Tan0020488 vs. ExPASy TrEMBL
Match: A0A7N2N0V5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.8e-09
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 8  VNLFALITLIIFLL---HFLSV-TSRPLTTVAGPG--NRHAISPPAPVSMSFSINRYKYV 67
          +  F L  L++ LL   +F S+  SRP  T+  P     +  SP AP ++SF+INRYK V
Sbjct: 3  IRTFMLTFLMVILLLQRNFGSIAASRPAGTIHPPAIPRSYLSSPKAPPTVSFTINRYKMV 62

Query: 68 EMDAFRPTSPGHSPGVGHKDPPGA 86
          E +AFRPT+PGHSPGVGH  PP A
Sbjct: 63 ETEAFRPTTPGHSPGVGHDTPPAA 86

[Close]

BLAST of Tan0020488 vs. ExPASy TrEMBL
Match: A0A5N5P6Z5 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_001745 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 12 ALITLIIFLLH---FLSVTSRPL----TTVAGPGN-RHAISPPAPV--SMSFSINRYKYV 71
          A  T ++ LLH    L+  SRPL      + GPG+ R+   PPA +     + INRYK +
Sbjct: 11 AFFTAVLLLLHQHFDLTAASRPLDIHSPAIPGPGSLRYPKPPPADIVHDSWYRINRYKNM 70

Query: 72 EMDAFRPTSPGHSPGVGHKDPPGAP 87
          E DAFRPT+PGHSPGVGH++PP AP
Sbjct: 71 ESDAFRPTTPGHSPGVGHEEPPPAP 95

[Close]

BLAST of Tan0020488 vs. TAIR 10
Match: AT1G31670.1 (Copper amine oxidase family protein )

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-08
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 11 FALITLIIFLLHFLSVT-SRPLTTVAGPGNRHAISPPAPVSMS---FSINRYKYVEMDAF 70
          F ++ L++  LHF + T +R    V GP +    SPP+P       F IN YK +E  AF
Sbjct: 13 FFMLFLLVLHLHFETTTAARKPVRVFGPPSSIEWSPPSPPKDDFEWFEINIYKNIEQTAF 72

Query: 71 RPTSPGHSPGVGHKDPP 84
          RPT  G S G+GHKDPP
Sbjct: 73 RPTGQGPSQGIGHKDPP 89

[Close]

BLAST of Tan0020488 vs. TAIR 10
Match: AT2G35612.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-07
Identity = 33/78 (42.31%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 13 LITLIIFLLHFLSVTSRPLTTVAGPGNRHAISPPAPVSMSF----SINRYKYVEMDAFRP 72
          LI L++  +HF +  +     V       + SPP P    F     INR+K +E DAFRP
Sbjct: 15 LIVLLVIQVHFENTKAARHAPVV------SWSPPEPPKDDFVWYHKINRFKNIEQDAFRP 74

Query: 73 TSPGHSPGVGHKDPPGAP 87
          T  G S G+GHK+PPGAP
Sbjct: 75 THQGPSQGIGHKNPPGAP 86

The following BLAST results are available for this feature:

BLAST of Tan0020488 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DN99	1.1e-08	46.25	Precursor of CEP12 OS=Arabidopsis thaliana OX=3702 GN=CEP12 PE=2 SV=1	[more]
Q3EBM6	2.3e-06	42.31	Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1	[more]

BLAST of Tan0020488 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608019.1	5.4e-21	72.84	Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6591857.1	2.4e-16	62.11	Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
OAY29952.1	2.1e-09	51.81	hypothetical protein MANES_15G184800v8 [Manihot esculenta]	[more]
KAB9571943.1	1.4e-08	45.78	hypothetical protein FH972_027045 [Carpinus fangiana]	[more]
KAB5574551.1	2.4e-08	49.41	hypothetical protein DKX38_001745 [Salix brachista]	[more]

BLAST of Tan0020488 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWX0	1.9e-19	66.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1	[more]
A0A2C9UJ23	1.0e-09	51.81	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G184800 PE=3 SV=...	[more]
A0A5N6L638	6.7e-09	45.78	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_027045 PE=3 SV=1	[more]
A0A7N2N0V5	8.8e-09	50.00	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A5N5P6Z5	1.1e-08	49.41	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_001745 PE=3 SV=1	[more]

BLAST of Tan0020488 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31670.1	3.3e-08	44.16	Copper amine oxidase family protein	[more]
AT2G35612.1	1.6e-07	42.31	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..86
None	No IPR available	PANTHER	PTHR33348:SF20	PRECURSOR OF CEP4	coord: 1..85
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020488.1	Tan0020488.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050793	regulation of developmental process
biological_process	GO:0048364	root development