Tan0020304 (gene) Snake gourd v1

Overview


Name	Tan0020304
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG10: 37210990 .. 37211397 (+)
RNA-Seq Expression	Tan0020304
Synteny	Tan0020304

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGACAACCGTCTGGACAGATTCGACAAAAATCCCTCAAATACGTTTATAACTCCCGTATAAAGGAGGGGTCATCGGTGAGAGAACACGTTCTTGATCTGATGGTCCACTTCAACGTGGCTGAGATGAACGGAGCGGTCATTGACGAGCAAAGTCAGGTATCATTCATCCTGGAGTCTCTTCCGAAGAGTTTCCTGCAATTCCGCAACAATGCAGTGATGAACAAGATAGAGTATAACCTGACTACTCTCCTTAATGAACTACAGACTTCCCAGTCTCTTATGAAGAATAAGGGACAGGCTAATGGAGAGGCAAATCTGTTTGCCCATTCCAGAAGGTTCCAGAAGGGTTCATCCTCTGGGACTAAGTCCTGTAGCTCCTCTTCTGGGCTTAAGAAGACCTAA

mRNA sequence

ATGTTTGGACAACCGTCTGGACAGATTCGACAAAAATCCCTCAAATACGTTTATAACTCCCGTATAAAGGAGGGGTCATCGGTGAGAGAACACGTTCTTGATCTGATGGTCCACTTCAACGTGGCTGAGATGAACGGAGCGGTCATTGACGAGCAAAGTCAGGTATCATTCATCCTGGAGTCTCTTCCGAAGAGTTTCCTGCAATTCCGCAACAATGCAGTGATGAACAAGATAGAGTATAACCTGACTACTCTCCTTAATGAACTACAGACTTCCCAGTCTCTTATGAAGAATAAGGGACAGGCTAATGGAGAGGCAAATCTGTTTGCCCATTCCAGAAGGTTCCAGAAGGGTTCATCCTCTGGGACTAAGTCCTGTAGCTCCTCTTCTGGGCTTAAGAAGACCTAA

Coding sequence (CDS)

ATGTTTGGACAACCGTCTGGACAGATTCGACAAAAATCCCTCAAATACGTTTATAACTCCCGTATAAAGGAGGGGTCATCGGTGAGAGAACACGTTCTTGATCTGATGGTCCACTTCAACGTGGCTGAGATGAACGGAGCGGTCATTGACGAGCAAAGTCAGGTATCATTCATCCTGGAGTCTCTTCCGAAGAGTTTCCTGCAATTCCGCAACAATGCAGTGATGAACAAGATAGAGTATAACCTGACTACTCTCCTTAATGAACTACAGACTTCCCAGTCTCTTATGAAGAATAAGGGACAGGCTAATGGAGAGGCAAATCTGTTTGCCCATTCCAGAAGGTTCCAGAAGGGTTCATCCTCTGGGACTAAGTCCTGTAGCTCCTCTTCTGGGCTTAAGAAGACCTAA

Protein sequence

MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKGQANGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKT

Homology

[Close]

BLAST of Tan0020304 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 5.1e-42
Identity = 99/134 (73.88%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKGQANGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKK 135
           SGTKS  SSSG KK
Sbjct: 221 SGTKSMPSSSGNKK 233

[Close]

BLAST of Tan0020304 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 5.1e-42
Identity = 99/134 (73.88%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 100 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 159

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKGQANGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 160 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 219

Query: 121 SGTKSCSSSSGLKK 135
           SGTKS  SSSG KK
Sbjct: 220 SGTKSMPSSSGNKK 232

[Close]

BLAST of Tan0020304 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 5.1e-42
Identity = 99/134 (73.88%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKGQANGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKK 135
           SGTKS  SSSG KK
Sbjct: 221 SGTKSMPSSSGNKK 233

[Close]

BLAST of Tan0020304 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 5.1e-42
Identity = 99/134 (73.88%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKGQANGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKK 135
           SGTKS  SSSG KK
Sbjct: 221 SGTKSMPSSSGNKK 233

[Close]

BLAST of Tan0020304 vs. NCBI nr
Match: KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 5.1e-42
Identity = 99/134 (73.88%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKGQANGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKK 135
           SGTKS  SSSG KK
Sbjct: 221 SGTKSMPSSSGNKK 233

[Close]

BLAST of Tan0020304 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.5e-42
Identity = 99/134 (73.88%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKGQANGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKK 135
           SGTKS  SSSG KK
Sbjct: 221 SGTKSMPSSSGNKK 233

[Close]

BLAST of Tan0020304 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.5e-42
Identity = 99/134 (73.88%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKGQANGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKK 135
           SGTKS  SSSG KK
Sbjct: 221 SGTKSMPSSSGNKK 233

[Close]

BLAST of Tan0020304 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.5e-42
Identity = 99/134 (73.88%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 218 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 277

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKGQANGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 278 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 337

Query: 121 SGTKSCSSSSGLKK 135
           SGTKS  SSSG KK
Sbjct: 338 SGTKSMPSSSGNKK 350

[Close]

BLAST of Tan0020304 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.5e-42
Identity = 99/134 (73.88%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKGQANGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKK 135
           SGTKS  SSSG KK
Sbjct: 221 SGTKSMPSSSGNKK 233

[Close]

BLAST of Tan0020304 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.5e-42
Identity = 99/134 (73.88%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MFGQPSGQIRQKSLKYVYNSRIKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILE 60
           MFGQ S QI+  +LKY+YN+R+ EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILE
Sbjct: 101 MFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILE 160

Query: 61  SLPKSFLQFRNNAVMNKIEYNLTTLLNELQTSQSLMKNKGQANGEANLFAHSRRFQKGSS 120
           SLP+SFLQFR+NAVMNKI Y LTTLLNELQT +SLMK KGQ  GEAN+   +R+F +GS+
Sbjct: 161 SLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGST 220

Query: 121 SGTKSCSSSSGLKK 135
           SGTKS  SSSG KK
Sbjct: 221 SGTKSMPSSSGNKK 233

The following BLAST results are available for this feature:

BLAST of Tan0020304 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0020304 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044955.1	5.1e-42	73.88	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	5.1e-42	73.88	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	5.1e-42	73.88	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	5.1e-42	73.88	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061339.1	5.1e-42	73.88	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0020304 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	2.5e-42	73.88	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	2.5e-42	73.88	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	2.5e-42	73.88	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	2.5e-42	73.88	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	2.5e-42	73.88	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Tan0020304 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 16..97 e-value: 7.7E-10 score: 38.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..135
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..125
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020304.1	Tan0020304.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding