Tan0020295 (gene) Snake gourd v1

Overview


Name	Tan0020295
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Location	LG02: 58549647 .. 58550327 (-)
RNA-Seq Expression	Tan0020295
Synteny	Tan0020295

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCAACTAGAATTCAGTGCACCTGGTATCTGTGCTGATTTGGAAGAGATAGGGTTTCACAAATGGGCTCGTGCATTCTGTCCTCGTCGACGTATGTCAATGACAACCAATCCATCTGAAAGTTATAATAAAGCGATTTTAAAAGCAAGAGAATTGCCAGTAACATCGATGTTTGAAGTTGTCAGAATGTATTTGCAAGATTGGTTCTATAGAAGAAGGAGTGATGCATCTTTTCAAGCGACTATCTTTTCAAAGTCATGCGAGACTGAGCTACGACAACAGATCGAAAGTGGCAGAACAATGCAGGTATTTATCTTAAATAATAACATATATATTCTGAATATATACACTATATGTTTGCTAAATACATACGTATATATTCTCCAAATAACATTTGTATTTGTTGATGTTTCATAGGTATACCCTGTTGATAATGTTCAGTATCAAGTCGTTAATGGAACTGAACAACATGAAGTTAATCTTTTCCAGAAGACATGTACATGTCGAATGTTGGACCAATTGCAAATTCCTTGTTCACATGCGTGTATTGTGTTGTCACGAAAACCCTTGTCCACCAAATATTTTGTGTCTCCTTATTATTCGAACAACATTTTGCGCGCCACCTACAATGGTTTGATTCATCCTGTTGGTGGTCAGGCAAGTTGGGTCATTCCATAA

mRNA sequence

ATGCGTCAACTAGAATTCAGTGCACCTGGTATCTGTGCTGATTTGGAAGAGATAGGGTTTCACAAATGGGCTCGTGCATTCTGTCCTCGTCGACGTATGTCAATGACAACCAATCCATCTGAAAGTTATAATAAAGCGATTTTAAAAGCAAGAGAATTGCCAGTAACATCGATGTTTGAAGTTGTCAGAATGTATTTGCAAGATTGGTTCTATAGAAGAAGGAGTGATGCATCTTTTCAAGCGACTATCTTTTCAAAGTCATGCGAGACTGAGCTACGACAACAGATCGAAAGTGGCAGAACAATGCAGGTATACCCTGTTGATAATGTTCAGTATCAAGTCGTTAATGGAACTGAACAACATGAAGTTAATCTTTTCCAGAAGACATGTACATGTCGAATGTTGGACCAATTGCAAATTCCTTGTTCACATGCGTGTATTGTGTTGTCACGAAAACCCTTGTCCACCAAATATTTTGTGTCTCCTTATTATTCGAACAACATTTTGCGCGCCACCTACAATGGTTTGATTCATCCTGTTGGTGGTCAGGCAAGTTGGGTCATTCCATAA

Coding sequence (CDS)

ATGCGTCAACTAGAATTCAGTGCACCTGGTATCTGTGCTGATTTGGAAGAGATAGGGTTTCACAAATGGGCTCGTGCATTCTGTCCTCGTCGACGTATGTCAATGACAACCAATCCATCTGAAAGTTATAATAAAGCGATTTTAAAAGCAAGAGAATTGCCAGTAACATCGATGTTTGAAGTTGTCAGAATGTATTTGCAAGATTGGTTCTATAGAAGAAGGAGTGATGCATCTTTTCAAGCGACTATCTTTTCAAAGTCATGCGAGACTGAGCTACGACAACAGATCGAAAGTGGCAGAACAATGCAGGTATACCCTGTTGATAATGTTCAGTATCAAGTCGTTAATGGAACTGAACAACATGAAGTTAATCTTTTCCAGAAGACATGTACATGTCGAATGTTGGACCAATTGCAAATTCCTTGTTCACATGCGTGTATTGTGTTGTCACGAAAACCCTTGTCCACCAAATATTTTGTGTCTCCTTATTATTCGAACAACATTTTGCGCGCCACCTACAATGGTTTGATTCATCCTGTTGGTGGTCAGGCAAGTTGGGTCATTCCATAA

Protein sequence

MRQLEFSAPGICADLEEIGFHKWARAFCPRRRMSMTTNPSESYNKAILKARELPVTSMFEVVRMYLQDWFYRRRSDASFQATIFSKSCETELRQQIESGRTMQVYPVDNVQYQVVNGTEQHEVNLFQKTCTCRMLDQLQIPCSHACIVLSRKPLSTKYFVSPYYSNNILRATYNGLIHPVGGQASWVIP

Homology

[Close]

BLAST of Tan0020295 vs. NCBI nr
Match: XP_008465177.1 (PREDICTED: uncharacterized protein LOC103502841 [Cucumis melo] >KAA0037688.1 uncharacterized protein E6C27_scaffold1593G00110 [Cucumis melo var. makuwa] >TYK10685.1 uncharacterized protein E5676_scaffold25G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 7.0e-37
Identity = 83/153 (54.25%), Postives = 111/153 (72.55%), Query Frame = 0


Query: 1   MRQLEFSAPGICADLEEIGFHKWARAFCPRRRMS-MTTNPSESYNKAILKARELPVTSMF 60
           MR LE SA GI  +LE IGF KW+RA+ P RR + MTTN SES N A+LKARELP+ SM 
Sbjct: 1   MRLLESSASGIREELESIGFAKWSRAYSPCRRYNVMTTNISESLNSAMLKARELPMCSML 60

Query: 61  EVVRMYLQDWFYRRRSDASFQATIFSKSCETELRQQIESGRTMQVYPVDNVQYQVVNGTE 120
           E +RM LQ WF+  R+DA +Q T F+K+ E+ LR+QIE  R+++V PV+N++YQV++G  
Sbjct: 61  EALRMMLQRWFFEWRNDAEYQVTDFTKTIESILRKQIELSRSVKVNPVNNMKYQVIDGIS 120

Query: 121 QHEVNLFQKTCTCRMLDQLQIPCSHACIVLSRK 153
           Q+ + L  K C+CRM D L+IPC+H C V + K
Sbjct: 121 QYVIYLPTKVCSCRMWDILEIPCAHVCAVFTMK 153

[Close]

BLAST of Tan0020295 vs. NCBI nr
Match: XP_038907134.1 (uncharacterized protein LOC120092945 [Benincasa hispida])

HSP 1 Score: 158.3 bits (399), Expect = 6.5e-35
Identity = 78/187 (41.71%), Postives = 110/187 (58.82%), Query Frame = 0


Query: 1   MRQLEFSAPGICADLEEIGFHKWARAFCPRRR-MSMTTNPSESYNKAILKARELPVTSMF 60
           M+ +E   P I   L E+GF KWARA+  R+R   MTTN SES +  + ++RE P+ S+ 
Sbjct: 464 MKWMESIYPSIREYLSEVGFEKWARAYSRRKRYRMMTTNISESLSSVLEESREFPIASLL 523

Query: 61  EVVRMYLQDWFYRRRSDASFQATIFSKSCETELRQQIESGRTMQVYPVDNVQYQVVNGTE 120
           + +R  LQDWFY R   AS   T+ +   E ELR Q    R  +V  ++N +Y+VV+G  
Sbjct: 524 DSIRQLLQDWFYERSKLASSMKTVLTSWAENELRDQHNQSRNFKVDSINNEEYKVVDGDN 583

Query: 121 QHEVNLFQKTCTCRMLDQLQIPCSHACIVLSRKPLSTKYFVSPYYSNNILRATYNGLIHP 180
            + VN+  K+C+C   D  +IPC+HAC VLS   L +  FVS YY +N   +TY   IHP
Sbjct: 584 HYVVNVISKSCSCCFWDLEEIPCAHACAVLSELNLDSYAFVSDYYFSNTFSSTYKRSIHP 643

Query: 181 VGGQASW 187
           +G  + W
Sbjct: 644 IGNHSDW 650

[Close]

BLAST of Tan0020295 vs. NCBI nr
Match: XP_022134813.1 (uncharacterized protein LOC111006994 [Momordica charantia])

HSP 1 Score: 157.9 bits (398), Expect = 8.5e-35
Identity = 92/190 (48.42%), Postives = 112/190 (58.95%), Query Frame = 0


Query: 1   MRQLEFSAPGICADLEEIGFHKWARAFCPRRRMS-MTTNPSESYNKAILKARELPVTSMF 60
           MR L+ +  GI  +L  IGF KW+ AF    R + MTTN SES N A+  ARELP+TSM 
Sbjct: 433 MRLLDSTVRGIREELSVIGFSKWSCAFSSSSRYNFMTTNISESLNAAMKDARELPITSML 492

Query: 61  EVVRMYLQDWFYRRRSDASFQATIFSKSCETELRQQIESGRTMQVYPVDNVQYQVVNGTE 120
           EVVRM LQ WFY R++ A FQ T F+KS E +LR+QI  GRTM VY V+N  YQV++   
Sbjct: 493 EVVRMMLQRWFYERKNHADFQITEFTKSVEKKLREQISDGRTMHVYAVNNDIYQVIDNHR 552

Query: 121 QHEVNLFQKTCTCRMLDQLQIPCSHACIVLSRKPLSTKYFVSPYYSNNILRATYNGLIHP 180
           Q E                             K L TK +VS YYSNN LR+TY+G IHP
Sbjct: 553 QVE-----------------------------KHLPTKGYVSLYYSNNYLRSTYSGSIHP 593

Query: 181 VGGQASWVIP 190
           +G Q+SW IP
Sbjct: 613 LGHQSSWNIP 593

[Close]

BLAST of Tan0020295 vs. NCBI nr
Match: TYK23827.1 (MuDR family transposase [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 6.1e-33
Identity = 77/186 (41.40%), Postives = 117/186 (62.90%), Query Frame = 0


Query: 1   MRQLEFSAPGICADLEEIGFHKWARAFCPRRR-MSMTTNPSESYNKAILKARELPVTSMF 60
           MR +E   P I   L ++ F KWARA+C R+R   MTTN SES N  + ++R+LPV ++ 
Sbjct: 470 MRWMESMYPSIRDYLSKVSFEKWARAYCTRKRYQMMTTNISESLNAVLKESRDLPVAALL 529

Query: 61  EVVRMYLQDWFYRRRSDASFQATIFSKSCETELRQQIESGRTMQVYPVDNVQYQVVNGTE 120
           + +R  LQ+WFY RR  A    T+ +   E ELR Q ++ R+  V  +++V++QV++G +
Sbjct: 530 DSIRQILQNWFYDRRKVACCMRTVLTSWAEGELRIQHQNSRSFTVNAINDVEFQVIDGRK 589

Query: 121 QHEVNLFQKTCTCRMLDQLQIPCSHACIVLSRKPLSTKYFVSPYYSNNILRATYNGLIHP 180
           Q  V L  K+CTCR+ D  +IPC+HA  VL  + ++T  FVS Y+ ++ L +TY G + P
Sbjct: 590 QFIVRLDCKSCTCRVWDLDEIPCAHALAVLRGRNMNTYSFVSKYFLSSTLISTYTGSVRP 649

Query: 181 VGGQAS 186
           VG  A+
Sbjct: 650 VGNHAN 655

[Close]

BLAST of Tan0020295 vs. NCBI nr
Match: XP_038885920.1 (uncharacterized protein LOC120076228 [Benincasa hispida])

HSP 1 Score: 149.8 bits (377), Expect = 2.3e-32
Identity = 78/182 (42.86%), Postives = 110/182 (60.44%), Query Frame = 0


Query: 1   MRQLEFSAPGICADLEEIGFHKWARAFCPRRRMS-MTTNPSESYNKAILKARELPVTSMF 60
           MRQL+  AP I  +LE++G  KWARAFC R+R S MTTN  E  N A+ +ARELPV  + 
Sbjct: 1   MRQLDGVAPSIRIELEDVGKSKWARAFCRRKRYSLMTTNIFECMNSALKEARELPVIGLL 60

Query: 61  EVVRMYLQDWFYRRRSDASFQATIFSKSCETELRQQIESGRTMQVYPVDNVQYQVVNGTE 120
           E +R  +Q WFY+RRS  SFQ +  S   E  +R  +   R++ +YP++  +++V + + 
Sbjct: 61  ESIRSLVQKWFYKRRSHWSFQYSELSLHAENIIRSALRDSRSIDLYPINQYEFEVHDRSN 120

Query: 121 QHEVNLFQKTCTCRMLDQLQIPCSHACIVLSRKPLSTKYFVSPYYSNNILRATYNGLIHP 180
           Q  VN+  +T +CR  D   IPCSHACI LSRK L  + +V  +Y  + LR  Y      
Sbjct: 121 QFVVNILNRTYSCRWWDLDMIPCSHACIALSRKNLQLQSYVHDFYRVSNLRLLYRKKTRL 180

Query: 181 VG 182
           +G
Sbjct: 181 IG 182

[Close]

BLAST of Tan0020295 vs. ExPASy TrEMBL
Match: A0A5D3CGP0 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00510 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 3.4e-37
Identity = 83/153 (54.25%), Postives = 111/153 (72.55%), Query Frame = 0


Query: 1   MRQLEFSAPGICADLEEIGFHKWARAFCPRRRMS-MTTNPSESYNKAILKARELPVTSMF 60
           MR LE SA GI  +LE IGF KW+RA+ P RR + MTTN SES N A+LKARELP+ SM 
Sbjct: 1   MRLLESSASGIREELESIGFAKWSRAYSPCRRYNVMTTNISESLNSAMLKARELPMCSML 60

Query: 61  EVVRMYLQDWFYRRRSDASFQATIFSKSCETELRQQIESGRTMQVYPVDNVQYQVVNGTE 120
           E +RM LQ WF+  R+DA +Q T F+K+ E+ LR+QIE  R+++V PV+N++YQV++G  
Sbjct: 61  EALRMMLQRWFFEWRNDAEYQVTDFTKTIESILRKQIELSRSVKVNPVNNMKYQVIDGIS 120

Query: 121 QHEVNLFQKTCTCRMLDQLQIPCSHACIVLSRK 153
           Q+ + L  K C+CRM D L+IPC+H C V + K
Sbjct: 121 QYVIYLPTKVCSCRMWDILEIPCAHVCAVFTMK 153

[Close]

BLAST of Tan0020295 vs. ExPASy TrEMBL
Match: A0A1S3CNA2 (uncharacterized protein LOC103502841 OS=Cucumis melo OX=3656 GN=LOC103502841 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 3.4e-37
Identity = 83/153 (54.25%), Postives = 111/153 (72.55%), Query Frame = 0


Query: 1   MRQLEFSAPGICADLEEIGFHKWARAFCPRRRMS-MTTNPSESYNKAILKARELPVTSMF 60
           MR LE SA GI  +LE IGF KW+RA+ P RR + MTTN SES N A+LKARELP+ SM 
Sbjct: 1   MRLLESSASGIREELESIGFAKWSRAYSPCRRYNVMTTNISESLNSAMLKARELPMCSML 60

Query: 61  EVVRMYLQDWFYRRRSDASFQATIFSKSCETELRQQIESGRTMQVYPVDNVQYQVVNGTE 120
           E +RM LQ WF+  R+DA +Q T F+K+ E+ LR+QIE  R+++V PV+N++YQV++G  
Sbjct: 61  EALRMMLQRWFFEWRNDAEYQVTDFTKTIESILRKQIELSRSVKVNPVNNMKYQVIDGIS 120

Query: 121 QHEVNLFQKTCTCRMLDQLQIPCSHACIVLSRK 153
           Q+ + L  K C+CRM D L+IPC+H C V + K
Sbjct: 121 QYVIYLPTKVCSCRMWDILEIPCAHVCAVFTMK 153

[Close]

BLAST of Tan0020295 vs. ExPASy TrEMBL
Match: A0A6J1C328 (uncharacterized protein LOC111006994 OS=Momordica charantia OX=3673 GN=LOC111006994 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 4.1e-35
Identity = 92/190 (48.42%), Postives = 112/190 (58.95%), Query Frame = 0


Query: 1   MRQLEFSAPGICADLEEIGFHKWARAFCPRRRMS-MTTNPSESYNKAILKARELPVTSMF 60
           MR L+ +  GI  +L  IGF KW+ AF    R + MTTN SES N A+  ARELP+TSM 
Sbjct: 433 MRLLDSTVRGIREELSVIGFSKWSCAFSSSSRYNFMTTNISESLNAAMKDARELPITSML 492

Query: 61  EVVRMYLQDWFYRRRSDASFQATIFSKSCETELRQQIESGRTMQVYPVDNVQYQVVNGTE 120
           EVVRM LQ WFY R++ A FQ T F+KS E +LR+QI  GRTM VY V+N  YQV++   
Sbjct: 493 EVVRMMLQRWFYERKNHADFQITEFTKSVEKKLREQISDGRTMHVYAVNNDIYQVIDNHR 552

Query: 121 QHEVNLFQKTCTCRMLDQLQIPCSHACIVLSRKPLSTKYFVSPYYSNNILRATYNGLIHP 180
           Q E                             K L TK +VS YYSNN LR+TY+G IHP
Sbjct: 553 QVE-----------------------------KHLPTKGYVSLYYSNNYLRSTYSGSIHP 593

Query: 181 VGGQASWVIP 190
           +G Q+SW IP
Sbjct: 613 LGHQSSWNIP 593

[Close]

BLAST of Tan0020295 vs. ExPASy TrEMBL
Match: A0A5D3DJR8 (MuDR family transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00300 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.0e-33
Identity = 77/186 (41.40%), Postives = 117/186 (62.90%), Query Frame = 0


Query: 1   MRQLEFSAPGICADLEEIGFHKWARAFCPRRR-MSMTTNPSESYNKAILKARELPVTSMF 60
           MR +E   P I   L ++ F KWARA+C R+R   MTTN SES N  + ++R+LPV ++ 
Sbjct: 470 MRWMESMYPSIRDYLSKVSFEKWARAYCTRKRYQMMTTNISESLNAVLKESRDLPVAALL 529

Query: 61  EVVRMYLQDWFYRRRSDASFQATIFSKSCETELRQQIESGRTMQVYPVDNVQYQVVNGTE 120
           + +R  LQ+WFY RR  A    T+ +   E ELR Q ++ R+  V  +++V++QV++G +
Sbjct: 530 DSIRQILQNWFYDRRKVACCMRTVLTSWAEGELRIQHQNSRSFTVNAINDVEFQVIDGRK 589

Query: 121 QHEVNLFQKTCTCRMLDQLQIPCSHACIVLSRKPLSTKYFVSPYYSNNILRATYNGLIHP 180
           Q  V L  K+CTCR+ D  +IPC+HA  VL  + ++T  FVS Y+ ++ L +TY G + P
Sbjct: 590 QFIVRLDCKSCTCRVWDLDEIPCAHALAVLRGRNMNTYSFVSKYFLSSTLISTYTGSVRP 649

Query: 181 VGGQAS 186
           VG  A+
Sbjct: 650 VGNHAN 655

[Close]

BLAST of Tan0020295 vs. ExPASy TrEMBL
Match: A0A5D3E198 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001100 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.3e-32
Identity = 77/182 (42.31%), Postives = 107/182 (58.79%), Query Frame = 0


Query: 1   MRQLEFSAPGICADLEEIGFHKWARAFCPRRRMS-MTTNPSESYNKAILKARELPVTSMF 60
           MRQLE  +P +  +LE +G HKWARAF  R+R   +TTN SES N  + + RELPV  + 
Sbjct: 380 MRQLEQLSPSMRHELEAVGRHKWARAFFRRKRYQVITTNISESMNSTLKEQRELPVIGLL 439

Query: 61  EVVRMYLQDWFYRRRSDASFQATIFSKSCETELRQQIESGRTMQVYPVDNVQYQVVNGTE 120
           E +R  +Q WFY RR+  SFQ T  S   E  +R+ +   R+M +YPVD  +++V +  E
Sbjct: 440 ESIRSLIQKWFYERRTKWSFQRTQLSIYAEDMIRESLAQSRSMNIYPVDQHEFEVHHRKE 499

Query: 121 QHEVNLFQKTCTCRMLDQLQIPCSHACIVLSRKPLSTKYFVSPYYSNNILRATYNGLIHP 180
           Q  VN+  +TC+CR  D   IPCSHACI LS + L+   +   +Y  + L   Y     P
Sbjct: 500 QFVVNILNRTCSCRQWDLDLIPCSHACIALSTRNLNLHLYTDKFYYVSNLINLYKKGTRP 559

Query: 181 VG 182
           +G
Sbjct: 560 IG 561

The following BLAST results are available for this feature:

BLAST of Tan0020295 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0020295 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465177.1	7.0e-37	54.25	PREDICTED: uncharacterized protein LOC103502841 [Cucumis melo] >KAA0037688.1 unc...	[more]
XP_038907134.1	6.5e-35	41.71	uncharacterized protein LOC120092945 [Benincasa hispida]	[more]
XP_022134813.1	8.5e-35	48.42	uncharacterized protein LOC111006994 [Momordica charantia]	[more]
TYK23827.1	6.1e-33	41.40	MuDR family transposase [Cucumis melo var. makuwa]	[more]
XP_038885920.1	2.3e-32	42.86	uncharacterized protein LOC120076228 [Benincasa hispida]	[more]

BLAST of Tan0020295 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGP0	3.4e-37	54.25	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3CNA2	3.4e-37	54.25	uncharacterized protein LOC103502841 OS=Cucumis melo OX=3656 GN=LOC103502841 PE=...	[more]
A0A6J1C328	4.1e-35	48.42	uncharacterized protein LOC111006994 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A5D3DJR8	3.0e-33	41.40	MuDR family transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E198	4.3e-32	42.31	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]

BLAST of Tan0020295 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006564	Zinc finger, PMZ-type	SMART	SM00575	26again6	coord: 128..155 e-value: 0.0025 score: 24.3
IPR007527	Zinc finger, SWIM-type	PFAM	PF04434	SWIM	coord: 112..151 e-value: 2.0E-6 score: 27.3
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 112..153 score: 9.111788

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020295.1	Tan0020295.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding