Tan0020264 (gene) Snake gourd v1

Overview
NameTan0020264
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
LocationLG07: 63184814 .. 63185709 (-)
RNA-Seq ExpressionTan0020264
SyntenyTan0020264
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACGAACCTTGGTACTACCATAGAGTTATCCTTCTCATAGATGAGCCCAGAGGATCGAGACGATTTGTTGACCATGAATTCCGATATGCTTCTTTCTGGTTACATATCCACAACTTACCACCTGCAGGTCAGACAAAAAAGATGGCTCAAGTTTATAGCAATCGGTTAGGAAGCTTCCAAAAGGTGGACTCATTTGATTCGGAATTTTGCTGGGGGAATACTTTGTGCATCAGAATTCGGATTGATGTTACAGAACCATTGAGGAGAGGACTGAAGGTGAAGATTGGAGTTATGACCAAGGAGATTTGGTGCCCGGTGACCTATAAAAAGCTTACGGATTTCTGTTACAGATGCGGGAAAATCGGACACACAGATCGTGAGTGCTCATTTTAAGTGGAGACAGAGGCTGAGGGGAAACAATTCGACCCCAATCTTCAACATCTCACCTTGCACAAAACAGCTCTACCGGGATTCTGGGCTAAATACATGGATGGTAGGGGCCGAGGGAGATTCCATCGGGGGAGAAGTGAGGGCTCAGGACACCGAAACGCGAGTGAGGAAGACCCAGAGGAAGATCCAAAGCAAATCCCTTTCTCAACCCCGTCAGTTCAGTTCAGGCGAGTGGTGGAGGCTCTTCGGCGGCAGAGGAGAAGGAAAAGGGAGCGACCGACAGCTAGGATTCAGGGAAGTTCTCCGATGACTTTCAAATTATTTTAAATGCGATTAATTTTTCAGATTCAACAGCTTCAAAGGGTGAATTGACGGCGGGATTCAAAGAGCATTCAAAGGCTCCACGGGAAATCAAAACTGCAGTGATTATAGAGGTTTCAAAGGAACTAGGTTTGCCGAAACGGTTTCAGAAGGAAAAAACGAAAAACCAGGCGAGTTGA

mRNA sequence

ATGGAGAACGAACCTTGGTACTACCATAGAGTTATCCTTCTCATAGATGAGCCCAGAGGATCGAGACGATTTGTTGACCATGAATTCCGATATGCTTCTTTCTGGTTACATATCCACAACTTACCACCTGCAGGTCAGACAAAAAAGATGGCTCAAGTTTATAGCAATCGGTTAGGAAGCTTCCAAAAGGTGGACTCATTTGATTCGGAATTTTGCTGGGGGAATACTTTGTGCATCAGAATTCGGATTGATGTTACAGAACCATTGAGGAGAGGACTGAAGGTGAAGATTGGAGTTATGACCAAGGAGATTTGGTGCCCGGTGACCTATAAAAAGCTTACGGATTTCTGTTACAGATGCGGGAAAATCGGACACACAGATCGGGCCGAGGGAGATTCCATCGGGGGAGAAGTGAGGGCTCAGGACACCGAAACGCGAGTGAGGAAGACCCAGAGGAAGATCCAAAGCAAATCCCTTTCTCAACCCCATTCAACAGCTTCAAAGGGTGAATTGACGGCGGGATTCAAAGAGCATTCAAAGGCTCCACGGGAAATCAAAACTGCAGTGATTATAGAGGTTTCAAAGGAACTAGGTTTGCCGAAACGGTTTCAGAAGGAAAAAACGAAAAACCAGGCGAGTTGA

Coding sequence (CDS)

ATGGAGAACGAACCTTGGTACTACCATAGAGTTATCCTTCTCATAGATGAGCCCAGAGGATCGAGACGATTTGTTGACCATGAATTCCGATATGCTTCTTTCTGGTTACATATCCACAACTTACCACCTGCAGGTCAGACAAAAAAGATGGCTCAAGTTTATAGCAATCGGTTAGGAAGCTTCCAAAAGGTGGACTCATTTGATTCGGAATTTTGCTGGGGGAATACTTTGTGCATCAGAATTCGGATTGATGTTACAGAACCATTGAGGAGAGGACTGAAGGTGAAGATTGGAGTTATGACCAAGGAGATTTGGTGCCCGGTGACCTATAAAAAGCTTACGGATTTCTGTTACAGATGCGGGAAAATCGGACACACAGATCGGGCCGAGGGAGATTCCATCGGGGGAGAAGTGAGGGCTCAGGACACCGAAACGCGAGTGAGGAAGACCCAGAGGAAGATCCAAAGCAAATCCCTTTCTCAACCCCATTCAACAGCTTCAAAGGGTGAATTGACGGCGGGATTCAAAGAGCATTCAAAGGCTCCACGGGAAATCAAAACTGCAGTGATTATAGAGGTTTCAAAGGAACTAGGTTTGCCGAAACGGTTTCAGAAGGAAAAAACGAAAAACCAGGCGAGTTGA

Protein sequence

MENEPWYYHRVILLIDEPRGSRRFVDHEFRYASFWLHIHNLPPAGQTKKMAQVYSNRLGSFQKVDSFDSEFCWGNTLCIRIRIDVTEPLRRGLKVKIGVMTKEIWCPVTYKKLTDFCYRCGKIGHTDRAEGDSIGGEVRAQDTETRVRKTQRKIQSKSLSQPHSTASKGELTAGFKEHSKAPREIKTAVIIEVSKELGLPKRFQKEKTKNQAS
Homology
BLAST of Tan0020264 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 1.7e-23
Identity = 49/126 (38.89%), Postives = 78/126 (61.90%), Query Frame = 0

Query: 1   MENEPWYYHRVILLIDEPRGSRRFVDHEFRYASFWLHIHNLPPAGQTKKMAQVYSNRLGS 60
           M+  PW++ + ++++ +P  S+   + EF   +FW+H+ +LP +   K MA    N +G+
Sbjct: 95  MKTGPWFFDKALIVLQKPCSSKNISELEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGN 154

Query: 61  FQKVDSFDSEFCWGNTLCIRIRIDVTEPLRRGLKVKIGVMTKEIWCPVTYKKLTDFCYRC 120
           F  VD  +  F WG +L IR+ ID+T+PLRRG+K+ I       W P+ Y++L DFCY C
Sbjct: 155 FVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFC 214

Query: 121 GKIGHT 127
           G IGH+
Sbjct: 215 GVIGHS 220

BLAST of Tan0020264 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-22
Identity = 47/128 (36.72%), Postives = 84/128 (65.62%), Query Frame = 0

Query: 1   MENEPWYYHRVILLIDEPRGSRRFVDHEFRYASFWLHIHNLPPAGQTKKMAQVYSNRLGS 60
           + + PW +++ +L++  P  + + +D  F + +FW+ IHN+P    + +MA +   +LG 
Sbjct: 92  LSSGPWTFNKSLLVLTSPTATNQPLDMNFNFCAFWIQIHNIPFECISTEMANILGAKLGD 151

Query: 61  FQKVDSFDSEFCWGNTLCIRIRIDVTEPLRRGLKVKIGVMTKEIWCPVTYKKLTDFCYRC 120
            ++++   ++   G  + +R++IDV++PLRRG+K+K     K+IWCP+ Y+KL DFCY C
Sbjct: 152 VEEIEGDGADGWAGPFIRVRVKIDVSKPLRRGIKLK-NSDGKDIWCPLRYEKLPDFCYEC 211

Query: 121 GKIGHTDR 129
           GKIGH+ R
Sbjct: 212 GKIGHSGR 218

BLAST of Tan0020264 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-20
Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 0

Query: 5   PWYYHRVILLIDEPRGSRRFVDHEFRYASFWLHIHNLPPAGQTKKMAQVYSNRLGSFQKV 64
           PW + R +++ID P    + +D +FR  S W+H  +L  A   K MA    N +G F+ V
Sbjct: 100 PWTFDRALIIIDNPVSLTKPLDMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDV 159

Query: 65  DSFDSEFCWGNTLCIRIRIDVTEPLRRGLKVKIGVMTKEIWCPVTYKKLTDFCYRCGKIG 124
           +S  + FCWG+ L +R+R DV +PL RG+K+ +       W P+ Y++L DF Y CG++ 
Sbjct: 160 ESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLD 219

Query: 125 H 126
           H
Sbjct: 220 H 220

BLAST of Tan0020264 vs. NCBI nr
Match: TXG54013.1 (hypothetical protein EZV62_019269 [Acer yangbiense])

HSP 1 Score: 108.6 bits (270), Expect = 6.7e-20
Identity = 48/128 (37.50%), Postives = 76/128 (59.38%), Query Frame = 0

Query: 1   MENEPWYYHRVILLIDEPRGSRRFVDHEFRYASFWLHIHNLPPAGQTKKMAQVYSNRLGS 60
           +E  PW + + +L++ E  GS +  D +FRY  FW+ +HNLP A   +++       +G 
Sbjct: 94  LEGGPWLFDKQLLVLREASGSEKVTDLQFRYVPFWIQLHNLPLACLNREIGLHLGGLVGQ 153

Query: 61  FQKVDSFDSEFCWGNTLCIRIRIDVTEPLRRGLKVKIGVMTKEIWCPVTYKKLTDFCYRC 120
            +++D+ +S  C G  + IR+ IDV  PL+RGL+V +G   K     + Y++L +FCY C
Sbjct: 154 VKEIDAGESGECVGQFIRIRVLIDVMNPLKRGLRVALGDDEKVNEVMICYERLPNFCYYC 213

Query: 121 GKIGHTDR 129
           GKIGH  R
Sbjct: 214 GKIGHLVR 221

BLAST of Tan0020264 vs. NCBI nr
Match: XP_039815364.1 (uncharacterized protein LOC120678302 [Panicum virgatum])

HSP 1 Score: 108.2 bits (269), Expect = 8.7e-20
Identity = 57/175 (32.57%), Postives = 91/175 (52.00%), Query Frame = 0

Query: 1   MENEPWYYHRVILLIDEPRGSRRFVDHEFRYASFWLHIHNLPPAGQTKKMAQVYSNRLGS 60
           M++ PW   +  L++ +   S+   + EF     W+ +  LP     K++A      LG 
Sbjct: 28  MDDGPWTISKEALVMADYDESKSIDEVEFTTIPIWIRVARLPMGLMKKEVAIQIGEELGE 87

Query: 61  FQKVDSFDSEFCWGNTLCIRIRIDVTEPLRRGLKVKIGVMTKEIWCPVTYKKLTDFCYRC 120
           F +VD  + EF  G  L +++RI++ +PLRRG+ + +G   +E WCP+TY+ L DFCY C
Sbjct: 88  FMEVDLENDEFAAGRFLRVKVRIEIEKPLRRGIMIDVGEGAQERWCPITYEFLPDFCYVC 147

Query: 121 GKIGHTDRAEGDSI-GGEVRAQDTETRVRKTQRKIQSKSLSQPHSTASKGELTAG 175
           G+IGHTD+A    +  GE      E R    ++K   +S     +  S G  + G
Sbjct: 148 GRIGHTDKACLTKLAAGEQAPFGRELRYIPPKKKFGGESWRSQENRRSGGGRSGG 202

BLAST of Tan0020264 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 8.2e-24
Identity = 49/126 (38.89%), Postives = 78/126 (61.90%), Query Frame = 0

Query: 1   MENEPWYYHRVILLIDEPRGSRRFVDHEFRYASFWLHIHNLPPAGQTKKMAQVYSNRLGS 60
           M+  PW++ + ++++ +P  S+   + EF   +FW+H+ +LP +   K MA    N +G+
Sbjct: 95  MKTGPWFFDKALIVLQKPCSSKNISELEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGN 154

Query: 61  FQKVDSFDSEFCWGNTLCIRIRIDVTEPLRRGLKVKIGVMTKEIWCPVTYKKLTDFCYRC 120
           F  VD  +  F WG +L IR+ ID+T+PLRRG+K+ I       W P+ Y++L DFCY C
Sbjct: 155 FVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFC 214

Query: 121 GKIGHT 127
           G IGH+
Sbjct: 215 GVIGHS 220

BLAST of Tan0020264 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.0e-23
Identity = 47/128 (36.72%), Postives = 84/128 (65.62%), Query Frame = 0

Query: 1   MENEPWYYHRVILLIDEPRGSRRFVDHEFRYASFWLHIHNLPPAGQTKKMAQVYSNRLGS 60
           + + PW +++ +L++  P  + + +D  F + +FW+ IHN+P    + +MA +   +LG 
Sbjct: 92  LSSGPWTFNKSLLVLTSPTATNQPLDMNFNFCAFWIQIHNIPFECISTEMANILGAKLGD 151

Query: 61  FQKVDSFDSEFCWGNTLCIRIRIDVTEPLRRGLKVKIGVMTKEIWCPVTYKKLTDFCYRC 120
            ++++   ++   G  + +R++IDV++PLRRG+K+K     K+IWCP+ Y+KL DFCY C
Sbjct: 152 VEEIEGDGADGWAGPFIRVRVKIDVSKPLRRGIKLK-NSDGKDIWCPLRYEKLPDFCYEC 211

Query: 121 GKIGHTDR 129
           GKIGH+ R
Sbjct: 212 GKIGHSGR 218

BLAST of Tan0020264 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.0e-21
Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 0

Query: 5   PWYYHRVILLIDEPRGSRRFVDHEFRYASFWLHIHNLPPAGQTKKMAQVYSNRLGSFQKV 64
           PW + R +++ID P    + +D +FR  S W+H  +L  A   K MA    N +G F+ V
Sbjct: 100 PWTFDRALIIIDNPVSLTKPLDMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDV 159

Query: 65  DSFDSEFCWGNTLCIRIRIDVTEPLRRGLKVKIGVMTKEIWCPVTYKKLTDFCYRCGKIG 124
           +S  + FCWG+ L +R+R DV +PL RG+K+ +       W P+ Y++L DF Y CG++ 
Sbjct: 160 ESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLD 219

Query: 125 H 126
           H
Sbjct: 220 H 220

BLAST of Tan0020264 vs. ExPASy TrEMBL
Match: A0A5C7H9Y2 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_019269 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.2e-20
Identity = 48/128 (37.50%), Postives = 76/128 (59.38%), Query Frame = 0

Query: 1   MENEPWYYHRVILLIDEPRGSRRFVDHEFRYASFWLHIHNLPPAGQTKKMAQVYSNRLGS 60
           +E  PW + + +L++ E  GS +  D +FRY  FW+ +HNLP A   +++       +G 
Sbjct: 94  LEGGPWLFDKQLLVLREASGSEKVTDLQFRYVPFWIQLHNLPLACLNREIGLHLGGLVGQ 153

Query: 61  FQKVDSFDSEFCWGNTLCIRIRIDVTEPLRRGLKVKIGVMTKEIWCPVTYKKLTDFCYRC 120
            +++D+ +S  C G  + IR+ IDV  PL+RGL+V +G   K     + Y++L +FCY C
Sbjct: 154 VKEIDAGESGECVGQFIRIRVLIDVMNPLKRGLRVALGDDEKVNEVMICYERLPNFCYYC 213

Query: 121 GKIGHTDR 129
           GKIGH  R
Sbjct: 214 GKIGHLVR 221

BLAST of Tan0020264 vs. ExPASy TrEMBL
Match: A0A6P4AIH1 (uncharacterized protein At4g02000-like OS=Ziziphus jujuba OX=326968 GN=LOC107428565 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-19
Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 0

Query: 1   MENEPWYYHRVILLIDEPRGSRRFVDHEFRYASFWLHIHNLPPAGQTKKMAQVYSNRLGS 60
           ++  PW++ R ++L +E  GS          A FW+H+HN P    TK   +   + LG 
Sbjct: 8   IDGAPWHFERALVLTEEISGSITPHSTNIHTAYFWIHVHNFPLQSMTKSTGEAIGSHLGE 67

Query: 61  FQKVDSFDSEFCWGNTLCIRIRIDVTEPLRRGLKVKIGVMTKEIWCPVTYKKLTDFCYRC 120
              V+S +   C+G  + +RI++D+  PLR G+KV +G    + W    Y+KL DFC++C
Sbjct: 68  CVMVNSDEEGLCFGKFMRVRIKLDIRRPLRTGMKVDLG-DKHQFWVEFQYEKLFDFCFQC 127

Query: 121 GKIGHTDR 129
           G +GHT +
Sbjct: 128 GLLGHTQK 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022156185.11.7e-2338.89uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022149484.11.4e-2236.72uncharacterized protein LOC111017902 [Momordica charantia][more]
XP_022132681.11.0e-2038.02uncharacterized protein LOC111005481 [Momordica charantia][more]
TXG54013.16.7e-2037.50hypothetical protein EZV62_019269 [Acer yangbiense][more]
XP_039815364.18.7e-2032.57uncharacterized protein LOC120678302 [Panicum virgatum][more]
Match NameE-valueIdentityDescription
A0A6J1DU558.2e-2438.89uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1D7657.0e-2336.72uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1BSZ15.0e-2138.02uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A5C7H9Y23.2e-2037.50CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01926... [more]
A0A6P4AIH12.1e-1934.38uncharacterized protein At4g02000-like OS=Ziziphus jujuba OX=326968 GN=LOC107428... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 83..128
e-value: 1.2E-9
score: 37.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..168
NoneNo IPR availablePANTHERPTHR31286:SF84SUBFAMILY NOT NAMEDcoord: 3..129
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 3..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0020264.1Tan0020264.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding