Tan0020244 (gene) Snake gourd v1

Overview


Name	Tan0020244
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerases I and III subunit RPAC1
Location	LG01: 19578295 .. 19586512 (+)
RNA-Seq Expression	Tan0020244
Synteny	Tan0020244

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCCGCCAAACCCTGCATAGCCGTGCCGCTCAGTCGCCGTCGCCGTCATCTTTCTCGATTTTGCTTCTCCGCCGCACCACGCCGTTCTTCGCCGATCTTCCTCCCTATTTTGGTCTCAGGTATTCTATCTGTCTCCATCTTTGCCCTACGAAGTCTCGCCTTGGACCTTCTTCCCTCTTTCTATTCGTTTTTCTTACTCCGTTCGAACCAAGTTTCTTAAACCCTAAATAAAACCTAATCTGTCTGAATTTTTCCTATCTCGAAGGTTTATAATGTCCGGTAAAGATAAGAACTCGCATAATATGTCGGAGTCGGAATCTGAACAAGAAAGTGTTGGCAAAGAAGGCATTGAATGGATAATGAATCTTCCAGATGTACCCATGAAGCTCCCACCACATGTGGAATTTCTGAGGACTCGAGTCGAATGCAAAGCAGATGCTCCCATTCATGTACCCTTCTTTTCCCTCTCCTCTCCCGTGTTTTGTTTGTTTTATCATCTCACTCGCTCTTATTCGAATTCGAAGAATGATATTTAATTCAAGGGAGTATAAATTTTGTATTTTTGTTGCGGAAGGTGAGTAGAATCTTGTTCAACTCTTTGCCCTTCAGCTTGAGGAAATATCCTTTTAACACGTTTAATGTAGTTATTATGTAGTAGGTTGAATGCATGAGTAAATAGCAACCTATTAAATTAATTCTCCCTCTTTCATACTTTGTGGGTCTATATTGTCTTACCAACTCTGTACTGTACTTGATTTTTATTCATAGAACGTGTACTTGTGATATTTGATACTGTAATTGGCTTATTTTAATTTTCTTCTCATGCTCCTTGTGGAAAATGTTGGCTTTTGTAGACAGATACCATACAGTATTCTGGAGCATTTTCTTCAATGGGTGTTGATAACAGTTTACGACTGGATCATTTTCGCAACAACTTCAAAATTGAAGTGATTGATCTCAAAGAAGATGACATTGAGTTCGACATGATCGGCATTGATCCAGCACTCGCTAATGCATTTCGGAGAATCCTGATAGCTGAGGTAGGTAATCAAACACATTGCATTAAAATTAAACTATTTATTCATTTTAGTAAGAATTTGCTGTGTGTTTGGTGTTTACTTCCTTGTCACCACTTCTTGTGTGCTATCGTGTGATCATTATACCAAAAGGCTCTTGAGATTTTCCTGACGACCAGGTGCAAATTTTTAGTCTCATGACTTGCACATTTGCTTCATCTGAAGCTTGTGTTTTATATGGAAGAGACATATGCTTCTACGATAATGTATGAAAGTTTGAAATCTTTGTGCCTCATGTAGTGATTGGAAGAATAACATTGGATTATCATCCATTCTTCTAAATATGAAACTTTGTTCATGTTTTGAAAGATAATAAAATAGGGATTTTGGTGATAATGGCATGGGCTGGTTGGAGTTTGTCTTGTTAGAGATGACATGGTCCTGGGTACATATTATTTCTCTTCCCACTGTAAGCTTACAGAAACACTACAGACGAAAGATAGGAATGGGGCAATCTCATTATCTTTAATGATGATGCTATTGAGATTGACCTTTAGAATCTTTTTTGTTTTTAACAAAATAATAATTATTATGACAGTGTTTTTTCTATTATACTCAATATTTTTCGATTTAAATAAGGCTTATGCTTTGTCTCTCTTGTTGAAAATCCTTTTGTCTTTTAGAGTGTTCGAGGTGATTAGGGATGTTTAATAATGAATGGAATATATGTTCGTTTGTTGTTTGCATTTTCTCATATTCGATCTCTTTCTATGTTAACAATTACATGATTTACATTGTTGCTATGCGGATATGGGTTTGATCTGAATTTTTCTGTAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTCGCCAACAATACATCAATAATCCAAGATGAAGTGCTTGCTCATAGGTTAGGTCTCATCCCGATTCGTGTTGATCCGAGGCTTTTTGAGTACTCAGGTATATATAAATATACATTTAATGTGCTTGTGTGCTGATGTTGGAAACTTCTATATGCATGTTTTCATTGAGGAAAAATAAAAAAGAATACAAGGATGCCCAAAAAAACTCGTATGTGCATACTGTGAAATACTTTCTATTTGGCTTACCCTTATTCTTTCTGAAGATGCTTAACTAATAATTTATATTCACAATTAGATAAAGACACACCAAATGAGAAGAATACCATTGTTTTTAGACTCCATGCTCGCTGTGAACGTGGAGAACCTCGTCTTACTGGTATTTTTCTTGTTTCCTTTGGAAGCTCTATGCTTAAATTTTCTTAAATTATAAACCTTTTTCAGTATTTTTCCTGTTTCGCTACTAATGATGAATGTATAATGGGTGATTCAGTGACATCAAAAACATTGACGTGGCTGCCAAATGGTAGTGAATTTCCTTTGGTATCTGACAAATCAGTTTCAAACTCAAAACCGAAAACGTATACTTCTTTTAGTTGCAGCCAAGACACACTTCCAGAATTTTCCAACAATCCAATTGGTCCAAGGGACAATGATATTATAATTGCTAGACTCGGCCCGGGTCAGGTAACTTAACTCTAAACTTTATCTATTATCTGTTGAAATATAGGGAAGAAGTGGTGTGCATGGGTAGATGATCAAGGTGATGAGTTATGCCGAGAATAACATAACATGCCTTGAATTTAAAATTGTTGATATATGTGCTTGTAATTTTGTTCACAAATAATTGTGGAGATCAGGAGGTATTTTAGGTTAATCGAGCTAGCAAATTTATTATAATGGATATAAAAATCATTACATAAGAATATGAAATTGCCATATATAATTTGTAATTGGAGTTAATACTCCCAATTGAAATGCATTTTTGTAGTTCCAATTCTGATATTATAAATTTCTTTGTACTTAATGAAATTCTAATTTTCTTATTAGCAAGAAAAGACTATTTATGTTGAAAGTACTCTTGAAGAAAAGGGGTATATGTTATGCTATGATTTTGGGTATGTTTCAGTGCTTAATGAGCTATTTTTGCTCGGTAGTTAGCAGGTGTAAGTTTCTAAATTTTTGTTTCAAATATTTATAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCAGTGGCCACTGCTTGGTACAGAATGCTTCCGGAGGTAAGAAAATATGTTACTTTTTAACTCAAAGATGCATAGATACTTTGAAGCCCTAATGGAACTTGTGATATTAGGTTGTACTTCTGGAAGAGATAGAGGATGAGTTGGCAGAAGAACTCAAAAAGAAATGTCCTGTTAATGTATTTGACATTGAAGACATAGCTAATGGTTAGTTTACTTCTTACATTTGCTATTAGTTTATGTTCATACTTGGAACATTATGGTCATAAAGATTCGGTGATGGGAAGGATTCTTTAAGAATAAAGTTATTGTCACGTATATAACTAATTTTCCTACTTTGGGAGTCTTGTTTATATCCTTGATGGAGTCTTAGCCTTGTAACTTCTCAAATATTGATGGAAAGTTGTCTTCCAATGTAAAAATAAAAGGGAGTTTAGTTTTTGTCCTCTCCCCAGTGCCCCATCTTGCAATTATGATGAATAAATGACGAATTATTTGGTTGTTCCTGATACTGAAAAGATGGATTCCATGTGGTTGCATGATGTTGGTTTCTTTTTGCAGAATTCAAATTGCATTCTTTTTTTTATCTACACTTCATTATTGACAATTTCTTTTTTGTAGGTAAGAAAAGGGCAACTGTAGCACGCCCACGAGATTGCACATTATGTAGAGAATGCATAAGAGGAGAAGCATGGGAGAAACGTGTCTCGTTGCAACGCGTGAAGGATCATTTCATTTGTAAGTAATGGTTTTTTGAGCGTAACTTAGAGGGTAGAACTAGACAGGATAAATCTGTGTGATGGTCGATATGTCTTTGTTCAATGCAGAGAGTGGCTTGATGACCATCGACATGACATCCTAACAAACAATAATTTGTCTCCTTCAATGTTGATTTTCCAAATTTTATCAGGCATTGGCTTCTTTTACCTTTTTGGGTTAAATTTCTTTTATTAACAAAAATAAATTTTTCATGAATTTGTTAGAAGCTGCATAGCAAGTTGAAAACACCAAATATTACAAACAAGGAAAAACTCCCCACGGAGCTTAAAACCCACCCAAGTTTTTGTTAATTTCAGAGTATAGTTGCTAAACTCTCTATCTATCGGAATGCAAAAAGTAACTTGATAGCATTAGCCCAAAGCTTCTTGGCTTTAGTCTTGAGAAGGTGACCTCACAACAACTAAATCAAGTTTACACCCAAAGAGTGAAAGACTTGAGACCATCCAAAATTTTGTATTATCGAGCAGGAACTCACCAAATACTTTAGCTAAAGAAACAAAGGAAGAAGAGATGATTCCACTGAGGGATTCAAGTCCATTGTGGGACATCTATTTTGCATATTTTCTATTATATTGATATGAATGCAAGCTAGAAGTGTAAGTTGTTTGGTTTGTGTCAGTTTTTGGCCAAAACGTAATCTAAATCTGATGATGTAATTGAACTGTTCTGCCCAACGACCAGACTGACCAAAACCAAACTGAACCGACCAAGAGGTATAATTTTGTCCTCTTTTTTCCTTAGAAATTTCAAGAAGGATCTGCCAGCCAACCGAATGAATCACTGTTGAGGATGTAAATCTTGGAGCAAAACAGAGAGATATGTCCATTCTTCCACCTCCCTGTTCATCAAATCTCTTCTCAACTGAACATTCCATTTTCTGTTAATCTCAAACCAGCAATTGTCAATAGAAAAGGACTTGGAACTTGCTATAGTGTAAATGGAGGGGGAAGAGGAACTGAGTGAGCGAAGAGAGATCCATATGCCTTCCCAGGAATTAAATTTTCATTTTCAAGTTTAGTAGTAGTGTTCTCCTCAATGAGAAATCTGGTTTTGCAAATTTCCTTCCAAGGGCTATAAGTAGCTTTTTTCCTAGTCTGATCTGGGAGCTAAGCACTAGCAGTCTTCCTAAACTTGCTTTTGATGATAGTTTTCCACAACTTTATCCTCTTAAGAATATCATCACATTCTTTAGCTAGAAGAGCCTTGTTTCTTTTTCTAAAATCTCCAATACCAATGCCTTAAAGGGGCTGTCACTTTAACCCAGCTCACAAGGTGACATCCACCCTCATTAGTATCACCTTCCCAAGGAAATCTCTGATTTTGTTTAACAAGGTTCATGGAGTTTTTCCACCCTTTCATTCCGTCACGCTCATGAATAAAGATATTAGGCTTTTCCTCCCCTTATGTTTAATAGGCTAATTTCCAATCACCCTTCCCCTTCTGTTAAAAGACTTCTCATCCATAATACATAATCATCACTTCCTGCTTTCCTGAAGGACTTATTCCTAGAGCTTTTCACAAGGCATTGCAGACACTCCCTAACCCAACAATTTGAAAATTATTTGATTAAGAAGTACTAGTTCTCACTCTTTCATTACCGTAGTATCCCCTAGTGGAAAAAAAGAATTGCCATCCTGGAATGAGGAAATTAGTATAATCAGAGTAAACACAATTCGATGGCTATTAACCTTTTTGGATTAATCAGCAACTAGTATATGGTCACAAGACCTCTGCAGTCTTGCTGCATCTTTTTTCACCTCTCTATGGGTTCTTTTTTTAGTTACAGTACCTAAATGACTTTCAGAAAGCTTTACGATAAGGTTGGTTGCTGTTTCTTGATCTCATTTTGAAATTAAAAGGTTTCAGCAAAAGGTGGAGAAGGTAGATTCAAGGGTTTCTTCCAAGCTCCAATTTCTCTGTTATGATAAATGGAAAACCTTTCTCTATTATGATAAATGGAAAACGTGCAGGGAAGATTGGGGTTCCTACAGGTCTTGGACAAAGAGATCTCCTTCCTCTTTTCTTTTTCACGATTGTTGCTATTCCTTTAGTTGTTTTGTTAATGTTTGTAATGATAAAGGGATCATTGAGATGGAGAGAATTAAAGTGAGAGTGGATTGAATGCAAATTTCACACATCCGTACGTAGATGATGCCTTTTTTTTTTTTTAGTCGCACTTGTAAAGTTGAGAATTGGCAATGGTTTCTGAGTTTGTTTCAAAATGCCTCTCGCCTCTTGATAAAGGAGGGCAGTCATCTGGTTAATGGGTCTAAATCACTCATCCTCAGTCCTCAGGAGGTCTGGGAGCTGTTTATCTAAGAATTTTTTTTGCTTTGCTCACTACATGGTTATGGGGGTACAAAGTTGAAGGCAAAACCCTTTGGAGAATCACTATTAACAGCGAGTTTTGAGATAGATAACTTCTGGAATTTTCCCTGCGGCATTAAATAGAAAGGCTCTTCATTCCCGTGGAAAGGCACTGCTAAGTACAGCAGGTTTGTCTGAAAGAACGTCAGCTTCACAGTGGGGAATGGCAGTGAAATTTCTTTTTAGGATGACTGTTGGGCCACCAATCAGCAGTTGAGAGAGTATCTGTCAAATCTGCTTCCTTGTCCCTTTATGAAGAGAGAAGAATCTTGGCTCTGGATTTGTGCAGATTGATCTGGGAAGGTAGTGGTCCTAAAAAAATAAAAAATTTCCTTTGGATAGTAGCTCACAGTAGCAATGAATACCTTCGATAGATAAGGTACAGCATAGTGGCACTACTATATTTCTCTTCCCCACGTTTGCATTTTGTGTAATTGTGAGGAAGATTCTCTATTCCTGCCTCTTCCCCAACATATCTCTATCCATCTTCCACTACATTTCTCTATCCCGTCTCGTTTGTATTTTGTTCAATGGTGAGGAAGAATCTCTATCCTACTTCTTTATTCATTGCATTGCAATCTTTACCTCTAAGGTATGGAATTTCATTTGTAAGCGGTTTGGTATAGTTTGGTGCTGCCCAAATCATTTAGAAGATTAAGTTGCTAGAGTACTTTGGTCAAATGCCAGTAAAGCATTTTTGCAGTTTTTCTACTTGTGGAAGGAAAGAAATGTTAGAATCTTTTCCTGGCATGTCAATCTCTCCTTATCACATTCGTGATATTGTACAGTTCAATGCCTCTAATTGGAGGGCTTTTGTTTAAACCCTTACTTTTTGGAGAATGGACACTTTTTGTGCTTTAGGTTGTTCTTTGGTGGTTGGCCTTGAATGGAATTTTCTCCATGTTTCTTATATAAAGAAAAATTAAGACTAAAAAGTATTTTGTGGGAGTGCTTTTGAAATCAATGATTTTAGCAAAAGCAAACCATTTGTGTTTGGTTCTACATTCTTTAAGGTGCTTTAAATGCTTCTTCTTGAACAGGTATTTTGGCCAAAAACACACTAATTCCTCACATAGTAGTTTAAGTGCCTTTTGCCTTTTGAAAAAGCACTTTAGATCACTTTTAAACATAACAAGTACAAGTCTAAATGGGAAGTTTTTTTTTTTTTTTTTTTTTTCATGGAAAAGGTTCTTTTATGCAGCGGGCCAAACGTACTCCCAAATAAACACACCCTTAGTTATCTTTGTTAGAAGAACACATTTGAGATGGTTTCAAGAAACTCGTTTTTCATTGATTGGGTTTTATATTCTTCTTCCCTTTCCTCTGTGCAGTTAAGATTGAATCAACAGGAGCGTTACCTCCAGAGGTGCTCTTCACTGAAGCTGTAAAGATATTGGAAGATAAGTGTGAACGTTTAATCGCTGAGCTCTCTTGATTCTTCCTATCCAAAAGAGATGGACCTGTACATTATTTCATTATATTCAGAAGTTACCCATTTTTGTAATATAGGAAATCTCATGTTCTATTTTTCTTTTGAATTGACAGTGGAATAGTAACACTTTTTGCTGAGCTCAGCTCTCTTGATTCCTCCTAAATTTTATGAATGCGGACTTTCGGAGGTGATCAAATAAGAGAATAGACGAAGATTACATTATTATTTCTTCAATGGAAATTTTAATTATTGATCAATTTGTCTTGAATGTGAAAAAGAGGTGATGGATAATCAAATCTATTATTGTTTTTGGATGGTTTATAGATAAGGCTGTTTACTTGCAAGGAATTCAAATACATCTTTGAATGAATAGAAATCAAAACTGCCTGTACTTTTGGTAGGATGTATTCGAAAGGTATACTGGAATATCTAGATATTTATGTATATTTGATAGGATTTGTTGATGACAATGTATTATGATATATGATGTTGTAAAGAGC

mRNA sequence

CTCCCGCCAAACCCTGCATAGCCGTGCCGCTCAGTCGCCGTCGCCGTCATCTTTCTCGATTTTGCTTCTCCGCCGCACCACGCCGTTCTTCGCCGATCTTCCTCCCTATTTTGGTCTCAGGTTTATAATGTCCGGTAAAGATAAGAACTCGCATAATATGTCGGAGTCGGAATCTGAACAAGAAAGTGTTGGCAAAGAAGGCATTGAATGGATAATGAATCTTCCAGATGTACCCATGAAGCTCCCACCACATGTGGAATTTCTGAGGACTCGAGTCGAATGCAAAGCAGATGCTCCCATTCATACAGATACCATACAGTATTCTGGAGCATTTTCTTCAATGGGTGTTGATAACAGTTTACGACTGGATCATTTTCGCAACAACTTCAAAATTGAAGTGATTGATCTCAAAGAAGATGACATTGAGTTCGACATGATCGGCATTGATCCAGCACTCGCTAATGCATTTCGGAGAATCCTGATAGCTGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTCGCCAACAATACATCAATAATCCAAGATGAAGTGCTTGCTCATAGGTTAGGTCTCATCCCGATTCGTGTTGATCCGAGGCTTTTTGAGTACTCAGATAAAGACACACCAAATGAGAAGAATACCATTGTTTTTAGACTCCATGCTCGCTGTGAACGTGGAGAACCTCGTCTTACTGTGACATCAAAAACATTGACGTGGCTGCCAAATGGTAGTGAATTTCCTTTGGTATCTGACAAATCAGTTTCAAACTCAAAACCGAAAACGTATACTTCTTTTAGTTGCAGCCAAGACACACTTCCAGAATTTTCCAACAATCCAATTGGTCCAAGGGACAATGATATTATAATTGCTAGACTCGGCCCGGGTCAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCAGTGGCCACTGCTTGGTACAGAATGCTTCCGGAGGTTGTACTTCTGGAAGAGATAGAGGATGAGTTGGCAGAAGAACTCAAAAAGAAATGTCCTGTTAATGTATTTGACATTGAAGACATAGCTAATGGTAAGAAAAGGGCAACTGTAGCACGCCCACGAGATTGCACATTATGTAGAGAATGCATAAGAGGAGAAGCATGGGAGAAACGTGTCTCGTTGCAACGCGTGAAGGATCATTTCATTTTTAAGATTGAATCAACAGGAGCGTTACCTCCAGAGGTGCTCTTCACTGAAGCTGTAAAGATATTGGAAGATAAGTGTGAACGTTTAATCGCTGAGCTCTCTTGATTCTTCCTATCCAAAAGAGATGGACCTGTACATTATTTCATTATATTCAGAAGTTACCCATTTTTGTAATATAGGAAATCTCATGTTCTATTTTTCTTTTGAATTGACAGTGGAATAGTAACACTTTTTGCTGAGCTCAGCTCTCTTGATTCCTCCTAAATTTTATGAATGCGGACTTTCGGAGGTGATCAAATAAGAGAATAGACGAAGATTACATTATTATTTCTTCAATGGAAATTTTAATTATTGATCAATTTGTCTTGAATGTGAAAAAGAGGTGATGGATAATCAAATCTATTATTGTTTTTGGATGGTTTATAGATAAGGCTGTTTACTTGCAAGGAATTCAAATACATCTTTGAATGAATAGAAATCAAAACTGCCTGTACTTTTGGTAGGATGTATTCGAAAGGTATACTGGAATATCTAGATATTTATGTATATTTGATAGGATTTGTTGATGACAATGTATTATGATATATGATGTTGTAAAGAGC

Coding sequence (CDS)

ATGTCCGGTAAAGATAAGAACTCGCATAATATGTCGGAGTCGGAATCTGAACAAGAAAGTGTTGGCAAAGAAGGCATTGAATGGATAATGAATCTTCCAGATGTACCCATGAAGCTCCCACCACATGTGGAATTTCTGAGGACTCGAGTCGAATGCAAAGCAGATGCTCCCATTCATACAGATACCATACAGTATTCTGGAGCATTTTCTTCAATGGGTGTTGATAACAGTTTACGACTGGATCATTTTCGCAACAACTTCAAAATTGAAGTGATTGATCTCAAAGAAGATGACATTGAGTTCGACATGATCGGCATTGATCCAGCACTCGCTAATGCATTTCGGAGAATCCTGATAGCTGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTCGCCAACAATACATCAATAATCCAAGATGAAGTGCTTGCTCATAGGTTAGGTCTCATCCCGATTCGTGTTGATCCGAGGCTTTTTGAGTACTCAGATAAAGACACACCAAATGAGAAGAATACCATTGTTTTTAGACTCCATGCTCGCTGTGAACGTGGAGAACCTCGTCTTACTGTGACATCAAAAACATTGACGTGGCTGCCAAATGGTAGTGAATTTCCTTTGGTATCTGACAAATCAGTTTCAAACTCAAAACCGAAAACGTATACTTCTTTTAGTTGCAGCCAAGACACACTTCCAGAATTTTCCAACAATCCAATTGGTCCAAGGGACAATGATATTATAATTGCTAGACTCGGCCCGGGTCAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCAGTGGCCACTGCTTGGTACAGAATGCTTCCGGAGGTTGTACTTCTGGAAGAGATAGAGGATGAGTTGGCAGAAGAACTCAAAAAGAAATGTCCTGTTAATGTATTTGACATTGAAGACATAGCTAATGGTAAGAAAAGGGCAACTGTAGCACGCCCACGAGATTGCACATTATGTAGAGAATGCATAAGAGGAGAAGCATGGGAGAAACGTGTCTCGTTGCAACGCGTGAAGGATCATTTCATTTTTAAGATTGAATCAACAGGAGCGTTACCTCCAGAGGTGCTCTTCACTGAAGCTGTAAAGATATTGGAAGATAAGTGTGAACGTTTAATCGCTGAGCTCTCTTGA

Protein sequence

MSGKDKNSHNMSESESEQESVGKEGIEWIMNLPDVPMKLPPHVEFLRTRVECKADAPIHTDTIQYSGAFSSMGVDNSLRLDHFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHARCERGEPRLTVTSKTLTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPRDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIANGKKRATVARPRDCTLCRECIRGEAWEKRVSLQRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLIAELS

Homology

[Close]

BLAST of Tan0020244 vs. ExPASy Swiss-Prot
Match: Q32L22 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=POLR1C PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 2.4e-79
Identity = 170/363 (46.83%), Postives = 225/363 (61.98%), Query Frame = 0


Query: 43  VEFLRTRVECKADAPIHTDTIQYSGAFSSMGVDNSLRLDHFRNNFKIEVIDLKEDDIEFD 102
           VE +RTRV        +  T  + G +S  G D++   D F  NF+++V+ + E+ +EFD
Sbjct: 7   VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66

Query: 103 MIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIRVDPRLFEY 162
           M+GID A+ANAFRRIL+AEVPTMA+EKVLV NNTSI+QDE+LAHRLGLIPI  DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126

Query: 163 SDK--DTPNEKNTIVFRLHARCER--------GEP-----RLTVTSKTLTWLPNGSEFPL 222
            ++  +   E +T+ FRL  RC R         +P        V ++ +TW+P G++  L
Sbjct: 127 RNQGDEGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGNQADL 186

Query: 223 VSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPRDNDIIIARLGPGQEIELEAHAVKGM 282
                                     F    I P  +DI+IA+L PGQEI+L  H VKG+
Sbjct: 187 --------------------------FPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGI 246

Query: 283 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIANGKKRATVAR 342
           GK HAK+SPVATA YR+LP++ LLE +E E AEEL +     V ++++I  GKK A VA 
Sbjct: 247 GKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVAN 306

Query: 343 PRDCTLCRECIRGEAWEKRVSLQRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLI 391
           PR  T  RE  R E  +K V L RV+DHFIF +ESTG LPP+VL +EA+K+L  KC+R +
Sbjct: 307 PRLDTFSREVFRNEKLKKVVRLARVRDHFIFSVESTGVLPPDVLVSEAIKVLMGKCQRFL 340

[Close]

BLAST of Tan0020244 vs. ExPASy Swiss-Prot
Match: O15160 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=POLR1C PE=1 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.1e-78
Identity = 167/363 (46.01%), Postives = 224/363 (61.71%), Query Frame = 0


Query: 43  VEFLRTRVECKADAPIHTDTIQYSGAFSSMGVDNSLRLDHFRNNFKIEVIDLKEDDIEFD 102
           VE +R+RV        +  T  + G +S  G D++   D F  NF+++V+ + E+ +EFD
Sbjct: 7   VEEMRSRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66

Query: 103 MIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIRVDPRLFEY 162
           M+GID A+ANAFRRIL+AEVPTMA+EKVLV NNTSI+QDE+LAHRLGLIPI  DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126

Query: 163 SDK--DTPNEKNTIVFRLHARCER--------GEP-----RLTVTSKTLTWLPNGSEFPL 222
            ++  +   E +T+ FRL  RC R         +P        V ++ +TW+P G++  L
Sbjct: 127 RNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADL 186

Query: 223 VSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPRDNDIIIARLGPGQEIELEAHAVKGM 282
                                     F    I P  +DI+IA+L PGQEI+L  H VKG+
Sbjct: 187 --------------------------FPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGI 246

Query: 283 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIANGKKRATVAR 342
           GK HAK+SPVATA YR+LP++ LLE +E E AEEL +     V +++++  GKK A VA 
Sbjct: 247 GKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGKKVARVAN 306

Query: 343 PRDCTLCRECIRGEAWEKRVSLQRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLI 391
           PR  T  RE  R E  +K V L RV+DH+IF +ESTG LPP+VL +EA+K+L  KC R +
Sbjct: 307 PRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFL 340

[Close]

BLAST of Tan0020244 vs. ExPASy Swiss-Prot
Match: P52432 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN=Polr1c PE=1 SV=3)

HSP 1 Score: 290.4 bits (742), Expect = 3.0e-77
Identity = 166/350 (47.43%), Postives = 218/350 (62.29%), Query Frame = 0


Query: 43  VEFLRTRVECKADAPIHTDTIQYSGAFSSMGVDNSLRLDHFRNNFKIEVIDLKEDDIEFD 102
           VE +RTRV        +  T  + G ++  G D++   + F  NF+++V+ + ED +EFD
Sbjct: 7   VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFD 66

Query: 103 MIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIRVDPRLFEY 162
           M+GID A+ANAFRRIL+AEVPTMA+EKVLV NNTSI+QDE+LAHRLGLIPI  DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 126

Query: 163 SD--KDTPNEKNTIVFRLHARCERGEPRLTVTSKTLTWLPNGSEFPLVSDKSVSNSKPKT 222
            +  ++   E +T+ FRL  RC R       +S       N   +          ++  T
Sbjct: 127 RNQGEEEGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVY----------TRHMT 186

Query: 223 YTSFSCSQDTLPEFSNNPIGPRDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATA 282
           +       D  PE     I P  +DI+IA+L PGQEI+L  H VKG+GK HAK+SPVATA
Sbjct: 187 WVPLGNQADVFPE---GTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATA 246

Query: 283 WYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIANGKKRATVARPRDCTLCRECIRG 342
            YR+LP + LLE +E E AEEL +     V ++E++  GKK A VA  R  T  RE  R 
Sbjct: 247 SYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREIFRH 306

Query: 343 EAWEKRVSLQRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLIAEL 391
           E  +K V L RV+DH+IF +ESTG LPP+VL +EA+KIL  KC R + EL
Sbjct: 307 EKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340

[Close]

BLAST of Tan0020244 vs. ExPASy Swiss-Prot
Match: Q54SN4 (DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum OX=44689 GN=polr1c PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.5e-73
Identity = 149/352 (42.33%), Postives = 213/352 (60.51%), Query Frame = 0


Query: 41  PHVEFLRTRVECKADAPIHTDTIQYSGAFSSMGVDNSLRLDHFRNNFKIEVIDLKEDDIE 100
           P++E  RT+V        +     YSGA++S+G DNS  L+ F+ NFKI ++    +++ 
Sbjct: 13  PNLENKRTKVTLTNSGVENARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANELV 72

Query: 101 FDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIRVDPRLF 160
           F+MIGID  +ANA RRI+I+E+PTMAIEKV + NNTSI+QDEVLAHRLG+IPI+VDPR F
Sbjct: 73  FEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIKVDPRKF 132

Query: 161 EYSDKDTPNE----KNTIVFRLHARCERGEP-----RLTVTSKTLTWLPNGSEFPLVSDK 220
            +     PN+    ++T++F+L  +CE+          T  SK L W+P   +       
Sbjct: 133 NFK---LPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIWVPTQDQ------- 192

Query: 221 SVSNSKPKTYTSFSCSQDTLPEFSNNPIGPRDNDIIIARLGPGQEIELEAHAVKGMGKTH 280
                           ++  P   + P  P ++DI I +L PGQ I+++ +  K +G+ H
Sbjct: 193 ----------------EEMFPNEEDRP-RPMEDDIPIMKLRPGQVIDIQCYCEKNIGREH 252

Query: 281 AKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIANGKKRATVARPRDC 340
            KWSPV TA YR+ P + + + I+ + A +L +KCP  VFDIED      +   ARP DC
Sbjct: 253 IKWSPVCTASYRLQPVISVDKSIKGDKANQLLEKCPKKVFDIED----SGQVVAARPLDC 312

Query: 341 TLCRECIRGEAWEKRVSLQRVKDHFIFKIESTGALPPEVLFTEAVKILEDKC 384
           T+CRECIR   +E+ V ++RV+DHFIF IESTGAL    +F EA+KI  +KC
Sbjct: 313 TMCRECIRDPEFEQNVKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKC 333

[Close]

BLAST of Tan0020244 vs. ExPASy Swiss-Prot
Match: O94616 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc40 PE=1 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 6.9e-66
Identity = 140/360 (38.89%), Postives = 211/360 (58.61%), Query Frame = 0


Query: 43  VEFLRTRVECKADAPIHTDTIQYSGAFSSMGVDNSLRLDHFRNNFKIEVIDLKEDDIEFD 102
           V+  RT +   +D      ++ + G +     DN   LD F+ N K+ +  L ++ + F+
Sbjct: 4   VDRSRTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFE 63

Query: 103 MIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIRVDPRLFEY 162
           + GID ++ANAFRRILIAE+PT+A E V + NNTSIIQDEVL+HR+GL+PI  DP +F++
Sbjct: 64  ISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKW 123

Query: 163 SDKDTPNEK------NTIVFRLHARC---------ERGEPRLTVTSKT----LTWLPNGS 222
                P ++      +T+VF L+ +C         E+   RL V S+     L W P G 
Sbjct: 124 FQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGR 183

Query: 223 EFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPRDNDIIIARLGPGQEIELEAHA 282
           +                             F++NPI   + DI++A+L PGQEI+LEAHA
Sbjct: 184 Q--------------------------EERFADNPIRVVNPDIVVAKLRPGQEIDLEAHA 243

Query: 283 VKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIANGKKRA 342
           + G+G+ HAK+SPVATA YR+LP + +L  IE E A + +K  P  V ++E+  +GKK+A
Sbjct: 244 ILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQA 303

Query: 343 TVARPRDCTLCRECIRGEAWEKRVSLQRVKDHFIFKIESTGALPPEVLFTEAVKILEDKC 384
            VA  R  T+ REC+R   +  +V L RV+DH++F +ESTG + P+VLF +++ +L+ KC
Sbjct: 304 RVADVRKDTVSRECLRHPEFADKVQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKSKC 335

[Close]

BLAST of Tan0020244 vs. NCBI nr
Match: KAG6596753.1 (DNA-directed RNA polymerases I and III subunit RPAC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 736.9 bits (1901), Expect = 9.2e-209
Identity = 362/391 (92.58%), Postives = 377/391 (96.42%), Query Frame = 0


Query: 1   MSGKDKNSHNMSESESEQESVGKEGIEWIMNLPDVPMKLPPHVEFLRTRVECKADAPIHT 60
           MSGKDKN HNMSES+SEQE VGKEGIEWIMNLPDVPMKLPPHVE  RTRVECKADAPIHT
Sbjct: 282 MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 341

Query: 61  DTIQYSGAFSSMGVDNSLRLDHFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGA++S+G+DNSLRLD FR NFKIEVIDLKEDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 342 DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 401

Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTSI+QDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLH 
Sbjct: 402 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 461

Query: 181 RCERGEPRLTVTSKTLTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERG+PRLT TSK LTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 462 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 521

Query: 241 PRDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           P+D DII+ARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAE
Sbjct: 522 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 581

Query: 301 ELKKKCPVNVFDIEDIANGKKRATVARPRDCTLCRECIRGEAWEKRVSLQRVKDHFIFKI 360
           ELK KCPVNVFDIEDIANGKKRATVARPR CTLCRECIRGEAWEKRVSL+RVKDHFIFKI
Sbjct: 582 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 641

Query: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 392
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 642 ESTGALPPEVLFTEAVKILEDKCERLIAELS 672

[Close]

BLAST of Tan0020244 vs. NCBI nr
Match: XP_022936430.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_022936440.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_022936448.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata])

HSP 1 Score: 736.9 bits (1901), Expect = 9.2e-209
Identity = 362/391 (92.58%), Postives = 377/391 (96.42%), Query Frame = 0


Query: 1   MSGKDKNSHNMSESESEQESVGKEGIEWIMNLPDVPMKLPPHVEFLRTRVECKADAPIHT 60
           MSGKDKN HNMSES+SEQE VGKEGIEWIMNLPDVPMKLPPHVE  RTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFSSMGVDNSLRLDHFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGA++S+G+DNSLRLD FR NFKIEVIDLKEDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTSI+QDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGEPRLTVTSKTLTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERG+PRLT TSK LTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PRDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           P+D DII+ARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIANGKKRATVARPRDCTLCRECIRGEAWEKRVSLQRVKDHFIFKI 360
           ELK KCPVNVFDIEDIANGKKRATVARPR CTLCRECIRGEAWEKRVSL+RVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 392
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Tan0020244 vs. NCBI nr
Match: XP_023540473.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo] >XP_023540474.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 736.1 bits (1899), Expect = 1.6e-208
Identity = 362/391 (92.58%), Postives = 376/391 (96.16%), Query Frame = 0


Query: 1   MSGKDKNSHNMSESESEQESVGKEGIEWIMNLPDVPMKLPPHVEFLRTRVECKADAPIHT 60
           MSGKDKN HNMSES+SE E VGKEGIEWIMNLPDVPMKLPPHVE  RTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEHEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFSSMGVDNSLRLDHFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGA++S+G+DNSLRLD FR NFKIEVIDLKEDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTSI+QDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGEPRLTVTSKTLTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERG+PRLT TSK LTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PRDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           P+D DII+ARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIANGKKRATVARPRDCTLCRECIRGEAWEKRVSLQRVKDHFIFKI 360
           ELK KCPVNVFDIEDIANGKKRATVARPR CTLCRECIRGEAWEKRVSL+RVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 392
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Tan0020244 vs. NCBI nr
Match: XP_023005438.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita maxima])

HSP 1 Score: 734.2 bits (1894), Expect = 6.0e-208
Identity = 361/391 (92.33%), Postives = 377/391 (96.42%), Query Frame = 0


Query: 1   MSGKDKNSHNMSESESEQESVGKEGIEWIMNLPDVPMKLPPHVEFLRTRVECKADAPIHT 60
           MSG+DKN H+MSES+SEQE VGKEGIEWIMNLPDVPMKLPPHVE  RTRVECKADAPIHT
Sbjct: 1   MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFSSMGVDNSLRLDHFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGA++S+G+DNSLRLD FR NFKIEVIDLKEDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTSI+QDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGEPRLTVTSKTLTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERG+PRLT TS+ LTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PRDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           P+D DII+ARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIANGKKRATVARPRDCTLCRECIRGEAWEKRVSLQRVKDHFIFKI 360
           ELK KCPVNVFDIEDIANGKKRATVARPR CTLCRECIRGEAWEKRVSL+RVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 392
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Tan0020244 vs. NCBI nr
Match: XP_038903474.1 (DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903475.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903476.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida])

HSP 1 Score: 733.4 bits (1892), Expect = 1.0e-207
Identity = 364/391 (93.09%), Postives = 379/391 (96.93%), Query Frame = 0


Query: 1   MSGKDKNSHNMSESESEQESVGKEGIEWIMNLPDVPMKLPPHVEFLRTRVECKADAPIHT 60
           MSGKDK+ HNMS+SESEQE V KEGIEWIMNLPDVPMKLPPH+E  RTRVECKADAPIHT
Sbjct: 1   MSGKDKSLHNMSDSESEQEGVAKEGIEWIMNLPDVPMKLPPHLELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFSSMGVDNSLRLDHFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGAF+SMGVDNSLRLD+FRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA
Sbjct: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTSI+QDEVLAHRLGL+PI VDPRLFEYSDKDTPNEKNTIVFRLHA
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLVPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180

Query: 181 RCERGEPRLTVTSKTLTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
            CERG+ RLTVTSK LTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG
Sbjct: 181 CCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240

Query: 241 PRDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           P+D+DII+ARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEI+DELAE
Sbjct: 241 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIKDELAE 300

Query: 301 ELKKKCPVNVFDIEDIANGKKRATVARPRDCTLCRECIRGEAWEKRVSLQRVKDHFIFKI 360
           ELKKKCPVNVFDIEDIA GKKRATVARPR CTLCRECIRG+ WEKRV+L+RVKDHFIFKI
Sbjct: 301 ELKKKCPVNVFDIEDIA-GKKRATVARPRACTLCRECIRGDVWEKRVALRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 392
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 390

[Close]

BLAST of Tan0020244 vs. ExPASy TrEMBL
Match: A0A6J1FDA3 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=3662 GN=LOC111443051 PE=3 SV=1)

HSP 1 Score: 736.9 bits (1901), Expect = 4.4e-209
Identity = 362/391 (92.58%), Postives = 377/391 (96.42%), Query Frame = 0


Query: 1   MSGKDKNSHNMSESESEQESVGKEGIEWIMNLPDVPMKLPPHVEFLRTRVECKADAPIHT 60
           MSGKDKN HNMSES+SEQE VGKEGIEWIMNLPDVPMKLPPHVE  RTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFSSMGVDNSLRLDHFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGA++S+G+DNSLRLD FR NFKIEVIDLKEDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTSI+QDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGEPRLTVTSKTLTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERG+PRLT TSK LTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PRDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           P+D DII+ARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIANGKKRATVARPRDCTLCRECIRGEAWEKRVSLQRVKDHFIFKI 360
           ELK KCPVNVFDIEDIANGKKRATVARPR CTLCRECIRGEAWEKRVSL+RVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 392
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Tan0020244 vs. ExPASy TrEMBL
Match: A0A6J1L269 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661 GN=LOC111498423 PE=3 SV=1)

HSP 1 Score: 734.2 bits (1894), Expect = 2.9e-208
Identity = 361/391 (92.33%), Postives = 377/391 (96.42%), Query Frame = 0


Query: 1   MSGKDKNSHNMSESESEQESVGKEGIEWIMNLPDVPMKLPPHVEFLRTRVECKADAPIHT 60
           MSG+DKN H+MSES+SEQE VGKEGIEWIMNLPDVPMKLPPHVE  RTRVECKADAPIHT
Sbjct: 1   MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFSSMGVDNSLRLDHFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGA++S+G+DNSLRLD FR NFKIEVIDLKEDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTSI+QDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGEPRLTVTSKTLTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERG+PRLT TS+ LTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PRDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           P+D DII+ARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIANGKKRATVARPRDCTLCRECIRGEAWEKRVSLQRVKDHFIFKI 360
           ELK KCPVNVFDIEDIANGKKRATVARPR CTLCRECIRGEAWEKRVSL+RVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 392
           ESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Tan0020244 vs. ExPASy TrEMBL
Match: A0A0A0L637 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 GN=Csa_3G047880 PE=3 SV=1)

HSP 1 Score: 725.7 bits (1872), Expect = 1.0e-205
Identity = 362/392 (92.35%), Postives = 378/392 (96.43%), Query Frame = 0


Query: 1   MSGKDKNSHNMSESESEQESVGKEGIEWIMNLPDVPMKLPPHVEFLRTRVECKADAPIHT 60
           MSGKDKN HNMSESESEQE V KEGIEWIMNLPDVPMKLPPHVE  RTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFSSMGVDNSLRLDHFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGAF+SMG DNSLRLD+FRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILI+
Sbjct: 61  DTIQYSGAFASMGFDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIS 120

Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHA 180
           EVPTMAIEKVL ANNTSI+QDEVLAHRLGL+PIRVDPRLF+YSDKD PNE NTIVFRLHA
Sbjct: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180

Query: 181 RCERGEPRLTVTSKTLTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTL-PEFSNNPI 240
            CERG+PRLTVTSK LTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQ+TL  EFSNNPI
Sbjct: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240

Query: 241 GPRDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELA 300
           GP+D+DII+ARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVL+EEIEDELA
Sbjct: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELA 300

Query: 301 EELKKKCPVNVFDIEDIANGKKRATVARPRDCTLCRECIRGEAWEKRVSLQRVKDHFIFK 360
           EEL+KKCPVNVFDIEDIA GKKRATVARPRDCTLCRECIRG+AWEKRV+L+RVKDHFIFK
Sbjct: 301 EELEKKCPVNVFDIEDIA-GKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFK 360

Query: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 392
           IESTGALPPEVLFTEAVKILEDKCERLIAELS
Sbjct: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Tan0020244 vs. ExPASy TrEMBL
Match: A0A6J1DXI7 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3673 GN=LOC111025015 PE=3 SV=1)

HSP 1 Score: 717.6 bits (1851), Expect = 2.8e-203
Identity = 357/381 (93.70%), Postives = 369/381 (96.85%), Query Frame = 0


Query: 11  MSESESEQESVGKEGIEWIMNLPDVPMKLPPHVEFLRTRVECKADAPIHTDTIQYSGAFS 70
           MS+SESEQ + GKEGIEWIMNLPDVPMKLPPH+E  RTRVECKADAPIHTDTIQYSGA++
Sbjct: 1   MSDSESEQVA-GKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYA 60

Query: 71  SMGVDNSLRLDHFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKV 130
           SMGVDNSLRLD+FRNNFKIEVIDL EDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKV
Sbjct: 61  SMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKV 120

Query: 131 LVANNTSIIQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHARCERGEPRLT 190
           LVANNTS+IQDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLHARCERG+PRLT
Sbjct: 121 LVANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLT 180

Query: 191 VTSKTLTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPRDNDIIIAR 250
           VTSK LTWLPNGSEFPLVSDKSV NSKPKTYTSFSCSQDTLPEFSNN IGP+DNDIIIAR
Sbjct: 181 VTSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIAR 240

Query: 251 LGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNV 310
           LGPGQEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL EEIEDELAEELKKKCPV+V
Sbjct: 241 LGPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDV 300

Query: 311 FDIEDIANGKKRATVARPRDCTLCRECIRGEAWEKRVSLQRVKDHFIFKIESTGALPPEV 370
           FDIEDIANGKKRA VARPR CTLCRECIRGEAWEKRVSL+RVKDHFIFKIESTGALPPEV
Sbjct: 301 FDIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEV 360

Query: 371 LFTEAVKILEDKCERLIAELS 392
           LFTEAVKILEDKCERLIAELS
Sbjct: 361 LFTEAVKILEDKCERLIAELS 380

[Close]

BLAST of Tan0020244 vs. ExPASy TrEMBL
Match: A0A6J1DY99 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3673 GN=LOC111025323 PE=3 SV=1)

HSP 1 Score: 708.4 bits (1827), Expect = 1.7e-200
Identity = 353/391 (90.28%), Postives = 370/391 (94.63%), Query Frame = 0


Query: 1   MSGKDKNSHNMSESESEQESVGKEGIEWIMNLPDVPMKLPPHVEFLRTRVECKADAPIHT 60
           MS KDK S ++  S+ EQ  VGKEGIEWIMNLPDVPMKLPPH+E  RTRVECKADAPIHT
Sbjct: 1   MSAKDKRSRDILGSKFEQ-CVGKEGIEWIMNLPDVPMKLPPHLELHRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFSSMGVDNSLRLDHFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
           DTIQYSGA++SMGVDNSL+LD+FRNNFKIEVIDL EDDIEFDMIGIDPALANAFRR LIA
Sbjct: 61  DTIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIA 120

Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTSIIQDEVLAHRLGL+PI VDPRLFEYSD+DTPNEKNTIVFRLHA
Sbjct: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHA 180

Query: 181 RCERGEPRLTVTSKTLTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERG+PRLTVTSK LTWLPNGSEFPLVSDKSV NSKPKTYTSFSCSQD LPEFS NPIG
Sbjct: 181 RCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIG 240

Query: 241 PRDNDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           P+D+DIIIARL PGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIANGKKRATVARPRDCTLCRECIRGEAWEKRVSLQRVKDHFIFKI 360
           ELK KCPV+VFDIEDIANGKKRATV RPR CTLCRECIRGEAWEKRVSL+RVK+HFIFKI
Sbjct: 301 ELKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKI 360

Query: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 392
           ESTGALPPEVLFTEA+KILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAIKILEDKCERLIAELS 390

[Close]

BLAST of Tan0020244 vs. TAIR 10
Match: AT1G60620.1 (RNA polymerase I subunit 43 )

HSP 1 Score: 511.1 bits (1315), Expect = 7.6e-145
Identity = 254/365 (69.59%), Postives = 298/365 (81.64%), Query Frame = 0


Query: 29  IMNLPDVPMKLPPHVEFLRTRVECKADAPIHTDTIQYSGAFSSMGVDNSLRLDHFRNNFK 88
           I +LPDVP  LPPH+E  RTRV CK D+ IH   I +SGA+SSMGVDNS+RL++F  +FK
Sbjct: 23  IFDLPDVPTGLPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSVRLENFSEDFK 82

Query: 89  IEVIDLKEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHRL 148
           ++VI L E D+ FDMIG+   +ANAFRRIL+AE+P+MAIEKV VANNTS+IQDEVLAHRL
Sbjct: 83  VDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRL 142

Query: 149 GLIPIRVDPRLFEY-SDKDTPNEKNTIVFRLHARCERGEPRLTVTSKTLTWLPNGSEFPL 208
           GLIPI  DPRLFEY S+ D PNEKNTIVF+LH +C +G+PR  V +  L WLPNGSE  L
Sbjct: 143 GLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGSE--L 202

Query: 209 VSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPRDNDIIIARLGPGQEIELEAHAVKGM 268
           + +   S + PKTYTSF+ SQD+ PEF+ NPI P   DI+IA+LGPGQEIELEAHAVKG+
Sbjct: 203 IKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVKGI 262

Query: 269 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIANGKKRATVAR 328
           GKTHAKWSPVATAWYRMLPEVVLL+E E + AEEL K CP  VFDIED+  G+KRATVAR
Sbjct: 263 GKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATVAR 322

Query: 329 PRDCTLCRECIR-GEAWEKRVSLQRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERL 388
           PRDC+LCRECIR G  WE +V L+RVK+HFIF IESTG+ PPEVLF EAVKILEDKCER+
Sbjct: 323 PRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKCERV 382

Query: 389 IAELS 392
           I+ELS
Sbjct: 383 ISELS 385

[Close]

BLAST of Tan0020244 vs. TAIR 10
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 474.2 bits (1219), Expect = 1.0e-133
Identity = 240/360 (66.67%), Postives = 283/360 (78.61%), Query Frame = 0


Query: 29  IMNLPDVPMKLPPHVEFLRTRVECKADAPIHTDTIQYSGAF-SSMGVDNSLRLDHFRNNF 88
           I +LPDVP  LPPH++  +TRV  K +AP HT +  YSG + SS   D++++L +F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 89  KIEVIDLKEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHR 148
           K++V+ L + D+EFDMIGID A ANAFRRILIAEVP+MAIEKVL+A NTS+I DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 149 LGLIPIRVDPRLFEY-SDKDTPNEKNTIVFRLHARCERGEPRLTVTSKTLTWLPNGSEFP 208
           +GLIPI  DPRLFEY S+ D  NEKNTIVF+LH +C +  PRL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 209 LVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPRDNDIIIARLGPGQEIELEAHAVKG 268
           L+ +     SKPKTYTSFSCSQD+LPEF+NNPI P D DI+IA+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 269 MGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIANGKKRATVA 328
           +GKTHAKWSPV TAWYRM PEVVL  E+EDELAE L   CP NVFDIED+  GKKRATVA
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314

Query: 329 RPRDCTLCRECIRGEAWEKRVSLQRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERL 387
           +PR CTLC+EC+R +     V L  VK+HFIF IESTG+LPPEVLFTEAVKILE KCE +
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372

[Close]

BLAST of Tan0020244 vs. TAIR 10
Match: AT1G60850.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 474.2 bits (1219), Expect = 1.0e-133
Identity = 240/360 (66.67%), Postives = 283/360 (78.61%), Query Frame = 0


Query: 29  IMNLPDVPMKLPPHVEFLRTRVECKADAPIHTDTIQYSGAF-SSMGVDNSLRLDHFRNNF 88
           I +LPDVP  LPPH++  +TRV  K +AP HT +  YSG + SS   D++++L +F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 89  KIEVIDLKEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHR 148
           K++V+ L + D+EFDMIGID A ANAFRRILIAEVP+MAIEKVL+A NTS+I DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 149 LGLIPIRVDPRLFEY-SDKDTPNEKNTIVFRLHARCERGEPRLTVTSKTLTWLPNGSEFP 208
           +GLIPI  DPRLFEY S+ D  NEKNTIVF+LH +C +  PRL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 209 LVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPRDNDIIIARLGPGQEIELEAHAVKG 268
           L+ +     SKPKTYTSFSCSQD+LPEF+NNPI P D DI+IA+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 269 MGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIANGKKRATVA 328
           +GKTHAKWSPV TAWYRM PEVVL  E+EDELAE L   CP NVFDIED+  GKKRATVA
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314

Query: 329 RPRDCTLCRECIRGEAWEKRVSLQRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERL 387
           +PR CTLC+EC+R +     V L  VK+HFIF IESTG+LPPEVLFTEAVKILE KCE +
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372

[Close]

BLAST of Tan0020244 vs. TAIR 10
Match: AT1G60850.3 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 342.0 bits (876), Expect = 6.1e-94
Identity = 173/262 (66.03%), Postives = 207/262 (79.01%), Query Frame = 0


Query: 29  IMNLPDVPMKLPPHVEFLRTRVECKADAPIHTDTIQYSGAF-SSMGVDNSLRLDHFRNNF 88
           I +LPDVP  LPPH++  +TRV  K +AP HT +  YSG + SS   D++++L +F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 89  KIEVIDLKEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHR 148
           K++V+ L + D+EFDMIGID A ANAFRRILIAEVP+MAIEKVL+A NTS+I DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 149 LGLIPIRVDPRLFEY-SDKDTPNEKNTIVFRLHARCERGEPRLTVTSKTLTWLPNGSEFP 208
           +GLIPI  DPRLFEY S+ D  NEKNTIVF+LH +C +  PRL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 209 LVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPRDNDIIIARLGPGQEIELEAHAVKG 268
           L+ +     SKPKTYTSFSCSQD+LPEF+NNPI P D DI+IA+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 269 MGKTHAKWSPVATAWYRMLPEV 289
           +GKTHAKWSPV TAWYRM PEV
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEV 274

[Close]

BLAST of Tan0020244 vs. TAIR 10
Match: AT2G15430.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 143.7 bits (361), Expect = 3.2e-34
Identity = 103/312 (33.01%), Postives = 162/312 (51.92%), Query Frame = 0


Query: 88  KIEVIDLKEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHR 147
           KI++ +LK+D  +F++   D ++ANA RR++I+EVPT+AI+ V +  N+S++ DE +AHR
Sbjct: 11  KIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 70

Query: 148 LGLIPIRVD-------PRLFEYSDKDTPNEKNTIVFRLHARCERGEPRLTVTSKTL-TWL 207
           LGLIP+  +        R  +  D D   E  ++ FRL ++C   +  L VTS+ L +  
Sbjct: 71  LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVT-DQTLDVTSRDLYSAD 130

Query: 208 PNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPRDNDIIIARLGPGQEIEL 267
           P  +      D SVS+S                             III +L  GQE++L
Sbjct: 131 PTVTPVDFTIDSSVSDSS------------------------EHKGIIIVKLRRGQELKL 190

Query: 268 EAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELK----KKCPVNVFDIED 327
            A A KG+GK HAKWSP AT  +   P++++ E++ D L++E K    +  P  VF ++ 
Sbjct: 191 RAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDP 250

Query: 328 IANGKKRATVARPRDCTLCRECI-RGEAWEK--RVSLQRVKDHFIFKIESTGALPPEVLF 385
           +    ++  V  P   T   E I + EA  K   + +    D FIF +ESTGA+    L 
Sbjct: 251 VT---RQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLV 294

The following BLAST results are available for this feature:

BLAST of Tan0020244 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32L22	2.4e-79	46.83	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=PO...	[more]
O15160	2.1e-78	46.01	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=...	[more]
P52432	3.0e-77	47.43	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN...	[more]
Q54SN4	1.5e-73	42.33	DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum...	[more]
O94616	6.9e-66	38.89	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pomb...	[more]

BLAST of Tan0020244 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596753.1	9.2e-209	92.58	DNA-directed RNA polymerases I and III subunit RPAC1, partial [Cucurbita argyros...	[more]
XP_022936430.1	9.2e-209	92.58	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_02...	[more]
XP_023540473.1	1.6e-208	92.58	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo...	[more]
XP_023005438.1	6.0e-208	92.33	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita maxima]	[more]
XP_038903474.1	1.0e-207	93.09	DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispi...	[more]

BLAST of Tan0020244 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDA3	4.4e-209	92.58	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=36...	[more]
A0A6J1L269	2.9e-208	92.33	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661...	[more]
A0A0A0L637	1.0e-205	92.35	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 ...	[more]
A0A6J1DXI7	2.8e-203	93.70	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3...	[more]
A0A6J1DY99	1.7e-200	90.28	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3...	[more]

BLAST of Tan0020244 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60620.1	7.6e-145	69.59	RNA polymerase I subunit 43	[more]
AT1G60850.2	1.0e-133	66.67	DNA-directed RNA polymerase family protein	[more]
AT1G60850.1	1.0e-133	66.67	DNA-directed RNA polymerase family protein	[more]
AT1G60850.3	6.1e-94	66.03	DNA-directed RNA polymerase family protein	[more]
AT2G15430.1	3.2e-34	33.01	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 98..294 e-value: 1.5E-47 score: 173.9
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 100..130 e-value: 2.0E-12 score: 47.3
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 124..272 e-value: 2.5E-42 score: 146.5
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 123..276
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 131..275 e-value: 2.3E-24 score: 85.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR11800:SF14	BNAA01G22480D PROTEIN	coord: 23..288
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 23..288
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 112..152
IPR033901	DNA-directed RNA polymerases I and III subunit AC40	CDD	cd07032	RNAP_I_II_AC40	coord: 87..288 e-value: 5.92974E-101 score: 295.657
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 85..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020244.1	Tan0020244.1	mRNA
Tan0020244.2	Tan0020244.2	mRNA
Tan0020244.3	Tan0020244.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006383	transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001054	RNA polymerase I activity
molecular_function	GO:0001056	RNA polymerase III activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity