Tan0020206 (gene) Snake gourd v1

Overview
NameTan0020206
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG07: 71909237 .. 71909680 (+)
RNA-Seq ExpressionTan0020206
SyntenyTan0020206
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACACAAACCCAAAAAATTCAATGGCCAAAATCTCTTTCAACTTCATCTTCATCTTCATTTTGGCCTTCATTTCAGTTGCAGCCATGGCAGAGGCCAAAGAAAAAGAAGTTGCAGTGACTTTTCAAGATCAACAGTTCATGTGGGGAAGGAAGGAGAGAGTGAATCATGGAAGCTTTAGAAGCCCTAAGAAACACCTTCTCAATCCTCACCAAAATGAGCCACTATTTGATCACTTTCAAGATCCTATTGATCTGTAAAAACTTTTTCTTATGCTCTTTTGGTACTTCTTTTTTGGTGGTTTTTTAGAGGTGAGTTGCTAGATTTTTATTGTTTGGGAAAGTTCAAATGATCATGTTGTTTGTATTTGATTTGGTGTACTTTGATTTGTACTATAAGGTTGAGTTTGCTTTTTAATTGATGTATGAAGAACTTTGTTTGTGG

mRNA sequence

AAAACACAAACCCAAAAAATTCAATGGCCAAAATCTCTTTCAACTTCATCTTCATCTTCATTTTGGCCTTCATTTCAGTTGCAGCCATGGCAGAGGCCAAAGAAAAAGAAGTTGCAGTGACTTTTCAAGATCAACAGTTCATGTGGGGAAGGAAGGAGAGAGTGAATCATGGAAGCTTTAGAAGCCCTAAGAAACACCTTCTCAATCCTCACCAAAATGAGCCACTATTTGATCACTTTCAAGATCCTATTGATCTGTAAAAACTTTTTCTTATGCTCTTTTGGTACTTCTTTTTTGGTGGTTTTTTAGAGGTGAGTTGCTAGATTTTTATTGTTTGGGAAAGTTCAAATGATCATGTTGTTTGTATTTGATTTGGTGTACTTTGATTTGTACTATAAGGTTGAGTTTGCTTTTTAATTGATGTATGAAGAACTTTGTTTGTGG

Coding sequence (CDS)

ATGGCCAAAATCTCTTTCAACTTCATCTTCATCTTCATTTTGGCCTTCATTTCAGTTGCAGCCATGGCAGAGGCCAAAGAAAAAGAAGTTGCAGTGACTTTTCAAGATCAACAGTTCATGTGGGGAAGGAAGGAGAGAGTGAATCATGGAAGCTTTAGAAGCCCTAAGAAACACCTTCTCAATCCTCACCAAAATGAGCCACTATTTGATCACTTTCAAGATCCTATTGATCTGTAA

Protein sequence

MAKISFNFIFIFILAFISVAAMAEAKEKEVAVTFQDQQFMWGRKERVNHGSFRSPKKHLLNPHQNEPLFDHFQDPIDL
Homology
[Close]
BLAST of Tan0020206 vs. NCBI nr
Match: KGN60344.1 (hypothetical protein Csa_002159 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 6.7e-10
Identity = 48/82 (58.54%), Postives = 55/82 (67.07%), Query Frame = 0 

Query: 1  MAKISFNFIFIFILAFISVAAMAE----AKEKEVAVTFQ-DQQFMWGRKERVNHGSFRSP 60
          MAK  F+FI IFILAFISV   A     +K K+VA  F    +F+WGRKER+NHGSFR P
Sbjct: 1  MAK--FSFILIFILAFISVTVAAAIGDMSKGKDVATKFHYHDEFIWGRKERINHGSFRGP 60

Query: 61 KKHLLN-PHQNEPLFDHFQDPI 77
           K+LLN PH   P FD FQ PI
Sbjct: 61 DKYLLNDPHPFHP-FDQFQGPI 79

[Close]
BLAST of Tan0020206 vs. ExPASy TrEMBL
Match: A0A0A0LH37 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895900 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.2e-10
Identity = 48/82 (58.54%), Postives = 55/82 (67.07%), Query Frame = 0 

Query: 1  MAKISFNFIFIFILAFISVAAMAE----AKEKEVAVTFQ-DQQFMWGRKERVNHGSFRSP 60
          MAK  F+FI IFILAFISV   A     +K K+VA  F    +F+WGRKER+NHGSFR P
Sbjct: 1  MAK--FSFILIFILAFISVTVAAAIGDMSKGKDVATKFHYHDEFIWGRKERINHGSFRGP 60

Query: 61 KKHLLN-PHQNEPLFDHFQDPI 77
           K+LLN PH   P FD FQ PI
Sbjct: 61 DKYLLNDPHPFHP-FDQFQGPI 79

The following BLAST results are available for this feature:
BLAST of Tan0020206 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0020206 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60344.16.7e-1058.54hypothetical protein Csa_002159 [Cucumis sativus][more]
BLAST of Tan0020206 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LH373.2e-1058.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895900 PE=4 SV=1[more]
BLAST of Tan0020206 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0020206.1Tan0020206.1mRNA