Tan0020191 (gene) Snake gourd v1

Overview
NameTan0020191
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Description30S ribosomal protein S8, chloroplastic
LocationContig00034: 104447 .. 104866 (-)
RNA-Seq ExpressionTan0020191
SyntenyTan0020191
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGCATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGACGAGGTTTTTTGAAAACGTAAGAAAACGTAAGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCAGGTCTCCGAATCTATTCTAACTATCAACGAATTCCTAGAATTTTAGGCGGAATGGGCATTGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGAAATCGGCGGAGAAATTTTGTGTTATATATGGTAA

mRNA sequence

ATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGCATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGACGAGGTTTTTTGAAAACCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCAGGTCTCCGAATCTATTCTAACTATCAACGAATTCCTAGAATTTTAGGCGGAATGGGCATTGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGAAATCGGCGGAGAAATTTTGTGTTATATATGGTAA

Coding sequence (CDS)

ATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGCATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGACGAGGTTTTTTGAAAACCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCAGGTCTCCGAATCTATTCTAACTATCAACGAATTCCTAGAATTTTAGGCGGAATGGGCATTGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGAAATCGGCGGAGAAATTTTGTGTTATATATGGTAA

Protein sequence

MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFLKTNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLQEIGGEILCYIW
Homology
[Close]
BLAST of Tan0020191 vs. ExPASy Swiss-Prot
Match: Q4VZK0 (30S ribosomal protein S8, chloroplastic OS=Cucumis sativus OX=3659 GN=rps8 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.2e-60
Identity = 120/136 (88.24%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDF 60
           MGKDTIANIITS  IRNADMNRKGMVRIP+TNITENIVKILLR GF+       ++NKDF
Sbjct: 1   MGKDTIANIITS--IRNADMNRKGMVRIPATNITENIVKILLREGFIENVRKHRESNKDF 60

Query: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120
           WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQ+IPRILGGMGIVILSTSRGIMTDR
Sbjct: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQKIPRILGGMGIVILSTSRGIMTDR 120

Query: 121 EARLQEIGGEILCYIW 130
           EARLQ IGGEILCYIW
Sbjct: 121 EARLQGIGGEILCYIW 134

[Close]
BLAST of Tan0020191 vs. ExPASy Swiss-Prot
Match: Q49KW3 (30S ribosomal protein S8, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps8 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.9e-55
Identity = 113/136 (83.09%), Postives = 120/136 (88.24%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFLK-------TNKDF 60
           MG+DTIA+IITS  IRNADMNRKG ++I STNITENIVKILLR GF+K        NK F
Sbjct: 1   MGRDTIADIITS--IRNADMNRKGTIQIASTNITENIVKILLREGFIKNVRKHQENNKYF 60

Query: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120
            VLTLRHRRNRKGPY+TILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR
Sbjct: 61  LVLTLRHRRNRKGPYRTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120

Query: 121 EARLQEIGGEILCYIW 130
           EARL+ IGGEILCYIW
Sbjct: 121 EARLEGIGGEILCYIW 134

[Close]
BLAST of Tan0020191 vs. ExPASy Swiss-Prot
Match: A0ZZ70 (30S ribosomal protein S8, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps8 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-52
Identity = 109/136 (80.15%), Postives = 120/136 (88.24%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDF 60
           MGKDTIA+IITS  IRNADMNRKG ++I STNITENIV+ILLR GF+       + NK F
Sbjct: 1   MGKDTIADIITS--IRNADMNRKGTIQIGSTNITENIVQILLREGFIDNVRKHRERNKYF 60

Query: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120
            VLTLRHRRNRKGP++TILNL+RISRPGLRIYSNYQ+IPRILGGMGIVILSTSRGIMTDR
Sbjct: 61  LVLTLRHRRNRKGPHRTILNLRRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDR 120

Query: 121 EARLQEIGGEILCYIW 130
           EARL+ IGGEILCYIW
Sbjct: 121 EARLEGIGGEILCYIW 134

[Close]
BLAST of Tan0020191 vs. ExPASy Swiss-Prot
Match: Q0ZIY3 (30S ribosomal protein S8, chloroplastic OS=Vitis vinifera OX=29760 GN=rps8 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.4e-52
Identity = 110/136 (80.88%), Postives = 118/136 (86.76%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDF 60
           MG+DTIA+IITS  IRN DM+RK  VRI STNITENIVKILLR GF+       ++NK F
Sbjct: 1   MGRDTIADIITS--IRNVDMDRKVTVRIASTNITENIVKILLREGFIENVRKHQESNKYF 60

Query: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120
            VLTLRHRRNRKG Y+TILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR
Sbjct: 61  LVLTLRHRRNRKGTYRTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120

Query: 121 EARLQEIGGEILCYIW 130
           EARL+ IGGEILCYIW
Sbjct: 121 EARLERIGGEILCYIW 134

[Close]
BLAST of Tan0020191 vs. ExPASy Swiss-Prot
Match: Q09ME2 (30S ribosomal protein S8, chloroplastic OS=Citrus sinensis OX=2711 GN=rps8 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.2e-52
Identity = 109/138 (78.99%), Postives = 116/138 (84.06%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL---------KTNK 60
           MGKDTIA+IITS  IRNADMNRKG VRI STNITEN+VKILLR GF+         K  K
Sbjct: 1   MGKDTIADIITS--IRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKK 60

Query: 61  DFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMT 120
           +F VLTLRHRRNRKGPY+ ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMT
Sbjct: 61  EFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMT 120

Query: 121 DREARLQEIGGEILCYIW 130
           DR ARL+ IGGEILCYIW
Sbjct: 121 DRAARLERIGGEILCYIW 136

[Close]
BLAST of Tan0020191 vs. NCBI nr
Match: YP_009752278.1 (ribosomal protein S8 [Trichosanthes baviensis] >YP_009752531.1 ribosomal protein S8 [Trichosanthes tubiflora] >YP_009753209.1 ribosomal protein S8 [Trichosanthes truncata] >YP_009753824.1 ribosomal protein S8 [Trichosanthes pilosa] >YP_009753909.1 ribosomal protein S8 [Trichosanthes lobata] >QIT04252.1 ribosomal protein S8 [Trichosanthes baviensis] >QIT04927.1 ribosomal protein S8 [Trichosanthes tubiflora] >QIT05688.1 ribosomal protein S8 [Trichosanthes pilosa] >QIT05857.1 ribosomal protein S8 [Trichosanthes lobata] >QIT06281.1 ribosomal protein S8 [Trichosanthes truncata])

HSP 1 Score: 237.3 bits (604), Expect = 7.5e-59
Identity = 123/136 (90.44%), Postives = 126/136 (92.65%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDF 60
           MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDF
Sbjct: 1   MGKDTIANIITS--IRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 60

Query: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120
           WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR
Sbjct: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120

Query: 121 EARLQEIGGEILCYIW 130
           EARLQEIGGEILCYIW
Sbjct: 121 EARLQEIGGEILCYIW 134

[Close]
BLAST of Tan0020191 vs. NCBI nr
Match: YP_009752616.1 (ribosomal protein S8 [Trichosanthes homophylla] >QIT05097.1 ribosomal protein S8 [Trichosanthes kirilowii] >QJD26505.1 ribosomal protein S8 [Trichosanthes kirilowii var. japonica] >QJD26679.1 ribosomal protein S8 [Trichosanthes rosthornii] >QIT05012.1 ribosomal protein S8 [Trichosanthes homophylla] >QJD26330.1 ribosomal protein S8 [Trichosanthes kirilowii])

HSP 1 Score: 235.0 bits (598), Expect = 3.7e-58
Identity = 122/136 (89.71%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDF 60
           MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++ KDF
Sbjct: 1   MGKDTIANIITS--IRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESTKDF 60

Query: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120
           WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR
Sbjct: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120

Query: 121 EARLQEIGGEILCYIW 130
           EARLQEIGGEILCYIW
Sbjct: 121 EARLQEIGGEILCYIW 134

[Close]
BLAST of Tan0020191 vs. NCBI nr
Match: YP_009525221.1 (ribosomal protein S8 [Hodgsonia macrocarpa] >YP_009560871.1 ribosomal protein S8 [Trichosanthes kirilowii] >YP_009674426.1 ribosomal protein S8 [Siraitia grosvenorii] >YP_009738237.1 ribosomal protein S8 [Siraitia siamensis] >YP_009751941.1 ribosomal protein S8 [Cyclanthera pedata] >YP_009752362.1 ribosomal protein S8 [Bryonia marmorata] >YP_009752447.1 ribosomal protein S8 [Trichosanthes tricuspidata] >YP_009753293.1 ribosomal protein S8 [Nothoalsomitra suberosa] >YP_009753655.1 ribosomal protein S8 [Trichosanthes wallichiana] >QIT04085.1 ribosomal protein S8 [Luffa aegyptiaca] >QKX48510.1 ribosomal protein S8 [Luffa acutangula] >AXR94584.1 ribosomal protein S8 [Hodgsonia macrocarpa] >AXR94670.1 ribosomal protein S8 [Hodgsonia macrocarpa] >AXR94753.1 ribosomal protein S8 [Hodgsonia macrocarpa])

HSP 1 Score: 234.6 bits (597), Expect = 4.9e-58
Identity = 122/136 (89.71%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDF 60
           MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDF
Sbjct: 1   MGKDTIANIITS--IRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 60

Query: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120
           WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR
Sbjct: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120

Query: 121 EARLQEIGGEILCYIW 130
           EARLQ IGGEILCYIW
Sbjct: 121 EARLQGIGGEILCYIW 134

[Close]
BLAST of Tan0020191 vs. NCBI nr
Match: YP_009751857.1 (ribosomal protein S8 [Indofevillea khasiana] >QIT04590.1 ribosomal protein S8 [Indofevillea khasiana] >QJS52358.1 ribosomal protein S8 [Indofevillea khasiana])

HSP 1 Score: 234.2 bits (596), Expect = 6.4e-58
Identity = 121/136 (88.97%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDF 60
           MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENI+KILLR GF+       ++NKDF
Sbjct: 1   MGKDTIANIITS--IRNADMNRKGMVRIPSTNITENIIKILLREGFIENVRKHRESNKDF 60

Query: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120
           WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR
Sbjct: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120

Query: 121 EARLQEIGGEILCYIW 130
           EARLQ IGGEILCYIW
Sbjct: 121 EARLQGIGGEILCYIW 134

[Close]
BLAST of Tan0020191 vs. NCBI nr
Match: YP_009752870.1 (ribosomal protein S8 [Baijiania yunnanensis] >QIT05942.1 ribosomal protein S8 [Baijiania yunnanensis])

HSP 1 Score: 233.8 bits (595), Expect = 8.3e-58
Identity = 121/136 (88.97%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDF 60
           MGKDTIANI+TS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDF
Sbjct: 1   MGKDTIANILTS--IRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 60

Query: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120
           WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR
Sbjct: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120

Query: 121 EARLQEIGGEILCYIW 130
           EARLQ IGGEILCYIW
Sbjct: 121 EARLQGIGGEILCYIW 134

[Close]
BLAST of Tan0020191 vs. ExPASy TrEMBL
Match: A0A6H0ET37 (30S ribosomal protein S8, chloroplastic OS=Trichosanthes tubiflora OX=1144424 GN=rps8 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.6e-59
Identity = 123/136 (90.44%), Postives = 126/136 (92.65%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDF 60
           MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDF
Sbjct: 1   MGKDTIANIITS--IRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 60

Query: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120
           WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR
Sbjct: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120

Query: 121 EARLQEIGGEILCYIW 130
           EARLQEIGGEILCYIW
Sbjct: 121 EARLQEIGGEILCYIW 134

[Close]
BLAST of Tan0020191 vs. ExPASy TrEMBL
Match: A0A6H0EPH4 (30S ribosomal protein S8, chloroplastic OS=Trichosanthes baviensis OX=1054457 GN=rps8 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.6e-59
Identity = 123/136 (90.44%), Postives = 126/136 (92.65%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDF 60
           MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDF
Sbjct: 1   MGKDTIANIITS--IRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 60

Query: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120
           WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR
Sbjct: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120

Query: 121 EARLQEIGGEILCYIW 130
           EARLQEIGGEILCYIW
Sbjct: 121 EARLQEIGGEILCYIW 134

[Close]
BLAST of Tan0020191 vs. ExPASy TrEMBL
Match: A0A6H0EVQ2 (30S ribosomal protein S8, chloroplastic OS=Trichosanthes lobata OX=2613913 GN=rps8 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.6e-59
Identity = 123/136 (90.44%), Postives = 126/136 (92.65%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDF 60
           MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDF
Sbjct: 1   MGKDTIANIITS--IRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 60

Query: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120
           WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR
Sbjct: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120

Query: 121 EARLQEIGGEILCYIW 130
           EARLQEIGGEILCYIW
Sbjct: 121 EARLQEIGGEILCYIW 134

[Close]
BLAST of Tan0020191 vs. ExPASy TrEMBL
Match: A0A6H0EVD8 (30S ribosomal protein S8, chloroplastic OS=Trichosanthes truncata OX=685060 GN=rps8 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.6e-59
Identity = 123/136 (90.44%), Postives = 126/136 (92.65%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDF 60
           MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDF
Sbjct: 1   MGKDTIANIITS--IRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 60

Query: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120
           WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR
Sbjct: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120

Query: 121 EARLQEIGGEILCYIW 130
           EARLQEIGGEILCYIW
Sbjct: 121 EARLQEIGGEILCYIW 134

[Close]
BLAST of Tan0020191 vs. ExPASy TrEMBL
Match: A0A6H0ETP6 (30S ribosomal protein S8, chloroplastic OS=Trichosanthes pilosa OX=1144454 GN=rps8 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.6e-59
Identity = 123/136 (90.44%), Postives = 126/136 (92.65%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDF 60
           MGKDTIANIITS  IRNADMNRKGMVRIPSTNITENIVKILLR GF+       ++NKDF
Sbjct: 1   MGKDTIANIITS--IRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDF 60

Query: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120
           WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR
Sbjct: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120

Query: 121 EARLQEIGGEILCYIW 130
           EARLQEIGGEILCYIW
Sbjct: 121 EARLQEIGGEILCYIW 134

[Close]
BLAST of Tan0020191 vs. TAIR 10
Match: ATCG00770.1 (ribosomal protein S8 )

HSP 1 Score: 199.5 bits (506), Expect = 1.6e-51
Identity = 107/136 (78.68%), Postives = 117/136 (86.03%), Query Frame = 0 

Query: 1   MGKDTIANIITSIRIRNADMNRKGMVRIPSTNITENIVKILLRRGFL-------KTNKDF 60
           MGKDTIA+IITS  IRNADMNRKG VRI STNITE+IVKILLR GF+       + N+ F
Sbjct: 1   MGKDTIADIITS--IRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRKHRENNQYF 60

Query: 61  WVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDR 120
            +LTLRHRRN+K  YKTILNLKRISRPGLRIYSN QRIPRILGG+GIVILSTS+GIMTDR
Sbjct: 61  LILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDR 120

Query: 121 EARLQEIGGEILCYIW 130
           EARL+ IGGEILCYIW
Sbjct: 121 EARLKRIGGEILCYIW 134

The following BLAST results are available for this feature:
BLAST of Tan0020191 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZK03.2e-6088.2430S ribosomal protein S8, chloroplastic OS=Cucumis sativus OX=3659 GN=rps8 PE=3 ... [more]
Q49KW36.9e-5583.0930S ribosomal protein S8, chloroplastic OS=Eucalyptus globulus subsp. globulus O... [more]
A0ZZ701.1e-5280.1530S ribosomal protein S8, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps8 ... [more]
Q0ZIY32.4e-5280.8830S ribosomal protein S8, chloroplastic OS=Vitis vinifera OX=29760 GN=rps8 PE=3 ... [more]
Q09ME23.2e-5278.9930S ribosomal protein S8, chloroplastic OS=Citrus sinensis OX=2711 GN=rps8 PE=3 ... [more]
BLAST of Tan0020191 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009752278.17.5e-5990.44ribosomal protein S8 [Trichosanthes baviensis] >YP_009752531.1 ribosomal protein... [more]
YP_009752616.13.7e-5889.71ribosomal protein S8 [Trichosanthes homophylla] >QIT05097.1 ribosomal protein S8... [more]
YP_009525221.14.9e-5889.71ribosomal protein S8 [Hodgsonia macrocarpa] >YP_009560871.1 ribosomal protein S8... [more]
YP_009751857.16.4e-5888.97ribosomal protein S8 [Indofevillea khasiana] >QIT04590.1 ribosomal protein S8 [I... [more]
YP_009752870.18.3e-5888.97ribosomal protein S8 [Baijiania yunnanensis] >QIT05942.1 ribosomal protein S8 [B... [more]
BLAST of Tan0020191 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6H0ET373.6e-5990.4430S ribosomal protein S8, chloroplastic OS=Trichosanthes tubiflora OX=1144424 GN... [more]
A0A6H0EPH43.6e-5990.4430S ribosomal protein S8, chloroplastic OS=Trichosanthes baviensis OX=1054457 GN... [more]
A0A6H0EVQ23.6e-5990.4430S ribosomal protein S8, chloroplastic OS=Trichosanthes lobata OX=2613913 GN=rp... [more]
A0A6H0EVD83.6e-5990.4430S ribosomal protein S8, chloroplastic OS=Trichosanthes truncata OX=685060 GN=r... [more]
A0A6H0ETP63.6e-5990.4430S ribosomal protein S8, chloroplastic OS=Trichosanthes pilosa OX=1144454 GN=rp... [more]
BLAST of Tan0020191 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00770.11.6e-5178.68ribosomal protein S8 [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1370.30coord: 1..71
e-value: 7.5E-17
score: 62.9
NoneNo IPR availableGENE3D3.30.1490.10coord: 72..129
e-value: 8.5E-30
score: 104.0
NoneNo IPR availablePANTHERPTHR11758:SF437S RIBOSOMAL PROTEIN S8, MITOCHONDRIALcoord: 1..128
IPR000630Ribosomal protein S8PFAMPF00410Ribosomal_S8coord: 4..129
e-value: 7.0E-37
score: 126.2
IPR000630Ribosomal protein S8PANTHERPTHR1175840S RIBOSOMAL PROTEIN S15Acoord: 1..128
IPR000630Ribosomal protein S8PROSITEPS00053RIBOSOMAL_S8coord: 99..116
IPR000630Ribosomal protein S8HAMAPMF_01302_BRibosomal_S8_Bcoord: 1..129
score: 26.650923
IPR035987Ribosomal protein S8 superfamilySUPERFAMILY56047Ribosomal protein S8coord: 2..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0020191.1Tan0020191.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome