Tan0020179 (gene) Snake gourd v1

Overview
NameTan0020179
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDBD_Tnp_Mut domain-containing protein
LocationLG07: 47172310 .. 47172765 (+)
RNA-Seq ExpressionTan0020179
SyntenyTan0020179
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGTGCTCAGGATGTGGTTAAAATTCAAGAATATAAAGATGTTGCTTGGTTTTTAACTTTAGTGAAAGATCAAAATACAAGATATCTTTTAGTTACTCATATCAATGATGCTTGTTTTGATGGCTGCTCCTGTGATCTTAGTGATGGAAGTGACAAGTTGTTATCAATTGCTACTTTGTCGTCTTCTTCTAGGATTGATGGTGATTTCCACGTTATTACATATATTTATAGAGATGTTGATGTGGAGGAAAATGATGTTTTTGCAAGTAAGGAAATTGTGTCAAAGTTTTTTTCATTCCTTGTTGTGAAGAAGAATTTTGAGTTTAGGACATTAAAAACAAATTCAAAGTCACTTGAATTTCAATGTGCCCAAGAGGGTTGCCAATGGTATGTTCGAGCATCGCGTTATAAGAATAGTAACTTGTGGATGCTTAGGAATCATTCTGAATGA

mRNA sequence

ATGAATGGTGCTCAGGATGTGGTTAAAATTCAAGAATATAAAGATGTTGCTTGGTTTTTAACTTTAGTGAAAGATCAAAATACAAGATATCTTTTAGTTACTCATATCAATGATGCTTGTTTTGATGGCTGCTCCTGTGATCTTAGTGATGGAAGTGACAAGTTGTTATCAATTGCTACTTTGTCGTCTTCTTCTAGGATTGATGGTGATTTCCACGTTATTACATATATTTATAGAGATGTTGATGTGGAGGAAAATGATGTTTTTGCAAGTAAGGAAATTGTGTCAAAGTTTTTTTCATTCCTTGTTGTGAAGAAGAATTTTGAGTTTAGGACATTAAAAACAAATTCAAAGTCACTTGAATTTCAATGTGCCCAAGAGGGTTGCCAATGGTATGTTCGAGCATCGCGTTATAAGAATAGTAACTTGTGGATGCTTAGGAATCATTCTGAATGA

Coding sequence (CDS)

ATGAATGGTGCTCAGGATGTGGTTAAAATTCAAGAATATAAAGATGTTGCTTGGTTTTTAACTTTAGTGAAAGATCAAAATACAAGATATCTTTTAGTTACTCATATCAATGATGCTTGTTTTGATGGCTGCTCCTGTGATCTTAGTGATGGAAGTGACAAGTTGTTATCAATTGCTACTTTGTCGTCTTCTTCTAGGATTGATGGTGATTTCCACGTTATTACATATATTTATAGAGATGTTGATGTGGAGGAAAATGATGTTTTTGCAAGTAAGGAAATTGTGTCAAAGTTTTTTTCATTCCTTGTTGTGAAGAAGAATTTTGAGTTTAGGACATTAAAAACAAATTCAAAGTCACTTGAATTTCAATGTGCCCAAGAGGGTTGCCAATGGTATGTTCGAGCATCGCGTTATAAGAATAGTAACTTGTGGATGCTTAGGAATCATTCTGAATGA

Protein sequence

MNGAQDVVKIQEYKDVAWFLTLVKDQNTRYLLVTHINDACFDGCSCDLSDGSDKLLSIATLSSSSRIDGDFHVITYIYRDVDVEENDVFASKEIVSKFFSFLVVKKNFEFRTLKTNSKSLEFQCAQEGCQWYVRASRYKNSNLWMLRNHSE
Homology
BLAST of Tan0020179 vs. NCBI nr
Match: XP_038907134.1 (uncharacterized protein LOC120092945 [Benincasa hispida])

HSP 1 Score: 170.6 bits (431), Expect = 1.0e-38
Identity = 85/147 (57.82%), Postives = 110/147 (74.83%), Query Frame = 0

Query: 1   MNGAQDVVKIQEYKDVAWFLTLVKDQNTRYLLVTHINDACFDGCSCDLSDGSDKLLSIAT 60
           MN  Q++V+I E KDVAWFLTLVK+Q+TR+ LV H+   C +G S  +S  ++  LSI  
Sbjct: 64  MNKVQNIVEIHEDKDVAWFLTLVKEQSTRHPLVAHVTSMCLEGSSSVVSSEAENYLSIVP 123

Query: 61  LSSSSRIDGDFHVITYIYRDVDVEENDVFASKEIVSKFFSFLVVKKNFEFRTLKTNSKSL 120
             S   ID DF VI  I+   D++E DVFASKEI+SK F ++ VKKNFEF+TL++NS+S+
Sbjct: 124 Y-SMPMIDDDFQVIMDIHIARDLKEKDVFASKEILSKCFYYIAVKKNFEFKTLRSNSRSI 183

Query: 121 EFQCAQEGCQWYVRASRYKNSNLWMLR 148
           EF+C Q+GCQWYVRASRYK S+LWMLR
Sbjct: 184 EFRCVQDGCQWYVRASRYKASDLWMLR 209

BLAST of Tan0020179 vs. NCBI nr
Match: KAA0065296.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 5.6e-29
Identity = 76/154 (49.35%), Postives = 102/154 (66.23%), Query Frame = 0

Query: 5   QDVVKIQEYKDVAWFLTLVKDQNTRYLLV----THINDACFDGCSCDLSDGSDKLLSIAT 64
           Q VV+IQE KDV WFL+LVK Q TR+ LV     H+ D   +  S  +  G D L S   
Sbjct: 70  QTVVQIQEDKDVTWFLSLVKGQITRHPLVAHAIAHVPDMDLEWSSV-VDSGMDNLCS--- 129

Query: 65  LSSSSRIDGDFHVITYIY-----RDVDVEENDVFASKEIVSKFFSFLVVKKNFEFRTLKT 124
           L  SS ID DF ++T I+        D++END+FASKE++SK F ++ +K NFEF+T+++
Sbjct: 130 LLPSSSIDDDFQILTDIHVSSFSSTFDLKENDMFASKELLSKSFYYIAIKNNFEFKTVRS 189

Query: 125 NSKSLEFQCAQEGCQWYVRASRYKNSNLWMLRNH 150
           NSKS+EF+C+Q+ C WYVRASRYK   LW LR +
Sbjct: 190 NSKSIEFKCSQDNCPWYVRASRYKGGKLWRLRKY 219

BLAST of Tan0020179 vs. NCBI nr
Match: KAA0062637.1 (uncharacterized protein E6C27_scaffold79G001490 [Cucumis melo var. makuwa])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-28
Identity = 72/157 (45.86%), Postives = 97/157 (61.78%), Query Frame = 0

Query: 2   NGAQDVVKIQEYKDVAWFLTLVKDQNTRYLLVTHINDACFDGCSCDLSDGSDKLLSIATL 61
           NG Q V+KI E KDV WFLTLVKDQ+T+Y LV H  +   D              S+ + 
Sbjct: 65  NGVQHVLKIVENKDVTWFLTLVKDQSTQYPLVAHSVNTVLDA-------------SVGSS 124

Query: 62  SSSSRIDGDFHVITYIYRDVDV---------EENDVFASKEIVSKFFSFLVVKKNFEFRT 121
            SSS ++ D      I+RDVD+         +E D+F SKEI+ K F F+ VK NFEF+T
Sbjct: 125 CSSSIVEVDLGDELVIFRDVDITNSKDGLTFKEKDLFCSKEILLKSFRFIAVKSNFEFKT 184

Query: 122 LKTNSKSLEFQCAQEGCQWYVRASRYKNSNLWMLRNH 150
           L++NS+S+E +C ++GC W+VRASRYK S  WM+R +
Sbjct: 185 LRSNSRSIELRCNEDGCLWFVRASRYKRSESWMIRKY 208

BLAST of Tan0020179 vs. NCBI nr
Match: TYK23827.1 (MuDR family transposase [Cucumis melo var. makuwa])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-28
Identity = 76/153 (49.67%), Postives = 103/153 (67.32%), Query Frame = 0

Query: 5   QDVVKIQEYKDVAWFLTLVKDQNTRYLLVTH--INDACFD-GCSCDLSDGSDKLLSIATL 64
           Q VV+IQE KDV WFL+LVK Q TR+ LV H  ++ +  D   S  +  G D L S   L
Sbjct: 70  QTVVQIQEDKDVTWFLSLVKGQITRHPLVAHAIVHVSNMDLEWSSVVDSGMDNLCS---L 129

Query: 65  SSSSRIDGDFHVITYIY-----RDVDVEENDVFASKEIVSKFFSFLVVKKNFEFRTLKTN 124
            SSS ID DF ++T I+        D++E D+FASKE++SK F ++ +K NFEF+T+++N
Sbjct: 130 LSSSSIDDDFQILTDIHVSSLSSTFDLKEKDMFASKELLSKSFYYIAIKNNFEFKTVRSN 189

Query: 125 SKSLEFQCAQEGCQWYVRASRYKNSNLWMLRNH 150
           SKS+EF+C+Q+ C WYVRASRYK   LW LR +
Sbjct: 190 SKSIEFKCSQDNCPWYVRASRYKGGELWRLRKY 219

BLAST of Tan0020179 vs. NCBI nr
Match: TYJ96591.1 (uncharacterized protein E5676_scaffold1278G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-28
Identity = 72/157 (45.86%), Postives = 97/157 (61.78%), Query Frame = 0

Query: 2   NGAQDVVKIQEYKDVAWFLTLVKDQNTRYLLVTHINDACFDGCSCDLSDGSDKLLSIATL 61
           N  Q V+KI E KDV WFLTLVKDQ+T+Y LV H  +   D              S+ + 
Sbjct: 65  NSVQHVLKIVENKDVTWFLTLVKDQSTQYPLVAHSVNTVLDA-------------SVGSS 124

Query: 62  SSSSRIDGDFHVITYIYRDVDV---------EENDVFASKEIVSKFFSFLVVKKNFEFRT 121
            SSS ++ D      I+RDVD+         +E D+F SKEI+ K F F+ VK NFEF+T
Sbjct: 125 CSSSIVEVDLGDELVIFRDVDITNSKDGLTFKEKDLFCSKEILLKSFRFIAVKSNFEFKT 184

Query: 122 LKTNSKSLEFQCAQEGCQWYVRASRYKNSNLWMLRNH 150
           L++NS+S+E +C ++GC W+VRASRYK S LWM+R +
Sbjct: 185 LRSNSRSIELRCNEDGCLWFVRASRYKRSELWMIRKY 208

BLAST of Tan0020179 vs. ExPASy TrEMBL
Match: A0A5A7VG38 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00100 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.7e-29
Identity = 76/154 (49.35%), Postives = 102/154 (66.23%), Query Frame = 0

Query: 5   QDVVKIQEYKDVAWFLTLVKDQNTRYLLV----THINDACFDGCSCDLSDGSDKLLSIAT 64
           Q VV+IQE KDV WFL+LVK Q TR+ LV     H+ D   +  S  +  G D L S   
Sbjct: 70  QTVVQIQEDKDVTWFLSLVKGQITRHPLVAHAIAHVPDMDLEWSSV-VDSGMDNLCS--- 129

Query: 65  LSSSSRIDGDFHVITYIY-----RDVDVEENDVFASKEIVSKFFSFLVVKKNFEFRTLKT 124
           L  SS ID DF ++T I+        D++END+FASKE++SK F ++ +K NFEF+T+++
Sbjct: 130 LLPSSSIDDDFQILTDIHVSSFSSTFDLKENDMFASKELLSKSFYYIAIKNNFEFKTVRS 189

Query: 125 NSKSLEFQCAQEGCQWYVRASRYKNSNLWMLRNH 150
           NSKS+EF+C+Q+ C WYVRASRYK   LW LR +
Sbjct: 190 NSKSIEFKCSQDNCPWYVRASRYKGGKLWRLRKY 219

BLAST of Tan0020179 vs. ExPASy TrEMBL
Match: A0A5D3DJR8 (MuDR family transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00300 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.9e-29
Identity = 76/153 (49.67%), Postives = 103/153 (67.32%), Query Frame = 0

Query: 5   QDVVKIQEYKDVAWFLTLVKDQNTRYLLVTH--INDACFD-GCSCDLSDGSDKLLSIATL 64
           Q VV+IQE KDV WFL+LVK Q TR+ LV H  ++ +  D   S  +  G D L S   L
Sbjct: 70  QTVVQIQEDKDVTWFLSLVKGQITRHPLVAHAIVHVSNMDLEWSSVVDSGMDNLCS---L 129

Query: 65  SSSSRIDGDFHVITYIY-----RDVDVEENDVFASKEIVSKFFSFLVVKKNFEFRTLKTN 124
            SSS ID DF ++T I+        D++E D+FASKE++SK F ++ +K NFEF+T+++N
Sbjct: 130 LSSSSIDDDFQILTDIHVSSLSSTFDLKEKDMFASKELLSKSFYYIAIKNNFEFKTVRSN 189

Query: 125 SKSLEFQCAQEGCQWYVRASRYKNSNLWMLRNH 150
           SKS+EF+C+Q+ C WYVRASRYK   LW LR +
Sbjct: 190 SKSIEFKCSQDNCPWYVRASRYKGGELWRLRKY 219

BLAST of Tan0020179 vs. ExPASy TrEMBL
Match: A0A5A7V6N4 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001490 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.9e-29
Identity = 72/157 (45.86%), Postives = 97/157 (61.78%), Query Frame = 0

Query: 2   NGAQDVVKIQEYKDVAWFLTLVKDQNTRYLLVTHINDACFDGCSCDLSDGSDKLLSIATL 61
           NG Q V+KI E KDV WFLTLVKDQ+T+Y LV H  +   D              S+ + 
Sbjct: 65  NGVQHVLKIVENKDVTWFLTLVKDQSTQYPLVAHSVNTVLDA-------------SVGSS 124

Query: 62  SSSSRIDGDFHVITYIYRDVDV---------EENDVFASKEIVSKFFSFLVVKKNFEFRT 121
            SSS ++ D      I+RDVD+         +E D+F SKEI+ K F F+ VK NFEF+T
Sbjct: 125 CSSSIVEVDLGDELVIFRDVDITNSKDGLTFKEKDLFCSKEILLKSFRFIAVKSNFEFKT 184

Query: 122 LKTNSKSLEFQCAQEGCQWYVRASRYKNSNLWMLRNH 150
           L++NS+S+E +C ++GC W+VRASRYK S  WM+R +
Sbjct: 185 LRSNSRSIELRCNEDGCLWFVRASRYKRSESWMIRKY 208

BLAST of Tan0020179 vs. ExPASy TrEMBL
Match: A0A5D3BD68 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1278G00090 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.9e-29
Identity = 72/157 (45.86%), Postives = 97/157 (61.78%), Query Frame = 0

Query: 2   NGAQDVVKIQEYKDVAWFLTLVKDQNTRYLLVTHINDACFDGCSCDLSDGSDKLLSIATL 61
           N  Q V+KI E KDV WFLTLVKDQ+T+Y LV H  +   D              S+ + 
Sbjct: 65  NSVQHVLKIVENKDVTWFLTLVKDQSTQYPLVAHSVNTVLDA-------------SVGSS 124

Query: 62  SSSSRIDGDFHVITYIYRDVDV---------EENDVFASKEIVSKFFSFLVVKKNFEFRT 121
            SSS ++ D      I+RDVD+         +E D+F SKEI+ K F F+ VK NFEF+T
Sbjct: 125 CSSSIVEVDLGDELVIFRDVDITNSKDGLTFKEKDLFCSKEILLKSFRFIAVKSNFEFKT 184

Query: 122 LKTNSKSLEFQCAQEGCQWYVRASRYKNSNLWMLRNH 150
           L++NS+S+E +C ++GC W+VRASRYK S LWM+R +
Sbjct: 185 LRSNSRSIELRCNEDGCLWFVRASRYKRSELWMIRKY 208

BLAST of Tan0020179 vs. ExPASy TrEMBL
Match: A0A5D3DWG1 (Mutator-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00290 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.0e-28
Identity = 74/154 (48.05%), Postives = 103/154 (66.88%), Query Frame = 0

Query: 5   QDVVKIQEYKDVAWFLTLVKDQNTRYLLV----THINDACFDGCSCDLSDGSDKLLSIAT 64
           Q+VV+IQE KDV WFL+LVK   TR+ LV     H+++   +  S  +  G D L S   
Sbjct: 70  QNVVQIQEDKDVTWFLSLVKGHITRHPLVAHAIAHVSNMDLEWSSV-VDSGMDNLCS--- 129

Query: 65  LSSSSRIDGDFHVITYIY-----RDVDVEENDVFASKEIVSKFFSFLVVKKNFEFRTLKT 124
           L  SS ID DF ++T I+        D++E D+FASKE++SK F ++ +K NFEF+T+++
Sbjct: 130 LLPSSSIDDDFQILTDIHVSSLSSTFDLKEKDMFASKELLSKSFYYIAIKNNFEFKTVRS 189

Query: 125 NSKSLEFQCAQEGCQWYVRASRYKNSNLWMLRNH 150
           NSKS+EF+C+Q+ C WYVRASRYK   LW LRN+
Sbjct: 190 NSKSMEFKCSQDNCPWYVRASRYKGGELWRLRNY 219

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038907134.11.0e-3857.82uncharacterized protein LOC120092945 [Benincasa hispida][more]
KAA0065296.15.6e-2949.35protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa][more]
KAA0062637.11.6e-2845.86uncharacterized protein E6C27_scaffold79G001490 [Cucumis melo var. makuwa][more]
TYK23827.11.6e-2849.67MuDR family transposase [Cucumis melo var. makuwa][more]
TYJ96591.11.6e-2845.86uncharacterized protein E5676_scaffold1278G00090 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5A7VG382.7e-2949.35Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DJR87.9e-2949.67MuDR family transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V6N47.9e-2945.86SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3BD687.9e-2945.86SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3DWG11.0e-2848.05Mutator-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004332Transposase, MuDR, plantPFAMPF03108DBD_Tnp_Mutcoord: 103..145
e-value: 5.0E-8
score: 32.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0020179.1Tan0020179.1mRNA