Tan0020099 (gene) Snake gourd v1

Overview
NameTan0020099
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein indeterminate-domain 2-like
LocationLG06: 7116467 .. 7116721 (+)
RNA-Seq ExpressionTan0020099
SyntenyTan0020099
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAATTCAACCCTTTTGATCACAAAAACCCTCTCAAATCCCTCCCTCAAGAACTCAGCAATAACTCGAGCCCCTTCGCCGCCTCGGTCGGTACACCGGGAGGCTCGTTCATGATCGGAGCTAGAAGTAGCATCTCTTCCTCTTTCTCGAGTCTTCAGCTTAGTTCCACCACTTCTTCGCGCTTCAGCTGCCTTCACGACAGCAAGAATAGTTGTCTTCAGGTAAGGGCGAAGCGGAAAAGGAAGGAGTAA

mRNA sequence

ATGGCTGAATTCAACCCTTTTGATCACAAAAACCCTCTCAAATCCCTCCCTCAAGAACTCAGCAATAACTCGAGCCCCTTCGCCGCCTCGGTCGGTACACCGGGAGGCTCGTTCATGATCGGAGCTAGAAGTAGCATCTCTTCCTCTTTCTCGAGTCTTCAGCTTAGTTCCACCACTTCTTCGCGCTTCAGCTGCCTTCACGACAGCAAGAATAGTTGTCTTCAGGTAAGGGCGAAGCGGAAAAGGAAGGAGTAA

Coding sequence (CDS)

ATGGCTGAATTCAACCCTTTTGATCACAAAAACCCTCTCAAATCCCTCCCTCAAGAACTCAGCAATAACTCGAGCCCCTTCGCCGCCTCGGTCGGTACACCGGGAGGCTCGTTCATGATCGGAGCTAGAAGTAGCATCTCTTCCTCTTTCTCGAGTCTTCAGCTTAGTTCCACCACTTCTTCGCGCTTCAGCTGCCTTCACGACAGCAAGAATAGTTGTCTTCAGGTAAGGGCGAAGCGGAAAAGGAAGGAGTAA

Protein sequence

MAEFNPFDHKNPLKSLPQELSNNSSPFAASVGTPGGSFMIGARSSISSSFSSLQLSSTTSSRFSCLHDSKNSCLQVRAKRKRKE
Homology
BLAST of Tan0020099 vs. NCBI nr
Match: XP_038876751.1 (zinc finger protein GAI-ASSOCIATED FACTOR 1-like [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 0

Query: 4   FNPFDHKNPLKSLPQELSNNSSPF-AASVGTPGGSFMIGARSS-ISSSFSSLQLSSTTSS 63
           FNP+D KNP KSLPQEL+N++ PF A + G PGG FM G RSS  SSSFSSL+LSSTTSS
Sbjct: 267 FNPYDKKNPFKSLPQELNNSTPPFPAPATGAPGGLFMAGPRSSNNSSSFSSLKLSSTTSS 326

Query: 64  RFSCLHDSKNSCLQ 76
           RFSCL+DSKNSCLQ
Sbjct: 327 RFSCLYDSKNSCLQ 340

BLAST of Tan0020099 vs. NCBI nr
Match: KAE8646332.1 (hypothetical protein Csa_016679, partial [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 8.8e-16
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 0

Query: 1  MAEFNPFDHKNPLKSLPQELSNNSSPFAASVGTPGGSFMIGARS-SISSSFSSLQLSSTT 60
          M EFNP+D KNP K+LPQEL NNS+P   + G PGG FM+G RS + SSSFSSL+LSSTT
Sbjct: 1  MPEFNPYDQKNPFKTLPQEL-NNSTP-TTTTGAPGGLFMVGPRSNNNSSSFSSLKLSSTT 60

Query: 61 SSRFSCLHDSKNSCLQ 76
          SSRFSCL+DSKN CLQ
Sbjct: 61 SSRFSCLYDSKNGCLQ 74

BLAST of Tan0020099 vs. NCBI nr
Match: XP_004136179.1 (zinc finger protein GAI-ASSOCIATED FACTOR 1 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 8.8e-16
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 0

Query: 1   MAEFNPFDHKNPLKSLPQELSNNSSPFAASVGTPGGSFMIGARS-SISSSFSSLQLSSTT 60
           M EFNP+D KNP K+LPQEL NNS+P   + G PGG FM+G RS + SSSFSSL+LSSTT
Sbjct: 246 MPEFNPYDQKNPFKTLPQEL-NNSTP-TTTTGAPGGLFMVGPRSNNNSSSFSSLKLSSTT 305

Query: 61  SSRFSCLHDSKNSCLQ 76
           SSRFSCL+DSKN CLQ
Sbjct: 306 SSRFSCLYDSKNGCLQ 319

BLAST of Tan0020099 vs. NCBI nr
Match: XP_022153576.1 (protein indeterminate-domain 2-like [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-13
Identity = 53/78 (67.95%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 1   MAEFNPFDHKNPLKSLPQELSNNSSPFAASVG--TPGGSFMIGARSSISSSFSSLQLSST 60
           M EFN +DHKNPLKSLP +L +NS+PF A V     GG FM G  SS SSSFSSLQLSS 
Sbjct: 264 MPEFNLYDHKNPLKSLPWQL-DNSNPFPAPVAATASGGLFMAGPGSSNSSSFSSLQLSSA 323

Query: 61  TSSRFSCLHDSKNSCLQV 77
            +SRFS LHDSKNSC QV
Sbjct: 324 AASRFSYLHDSKNSCFQV 340

BLAST of Tan0020099 vs. NCBI nr
Match: KAA0068031.1 (protein indeterminate-domain 2-like [Cucumis melo var. makuwa] >TYK18097.1 protein indeterminate-domain 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1   MAEFNPFDHKNPLKSLPQELSNNSSPFAASVGTPGGSFMIG--ARSSISSSFSSLQLSST 60
           M EFNP+D K P KSLPQEL NNS+P   + G PGG FM G    ++ SSS SSL+LSST
Sbjct: 268 MPEFNPYDQKTPFKSLPQEL-NNSTP---TTGAPGGLFMGGHYRNNNNSSSLSSLKLSST 327

Query: 61  TSSRFSCLHDSKNSCLQ 76
           TSSRFSCL+DSKN CLQ
Sbjct: 328 TSSRFSCLYDSKNGCLQ 340

BLAST of Tan0020099 vs. ExPASy TrEMBL
Match: A0A0A0K5A7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G395230 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 1   MAEFNPFDHKNPLKSLPQELSNNSSPFAASVGTPGGSFMIGARS-SISSSFSSLQLSSTT 60
           M EFNP+D KNP K+LPQEL NNS+P   + G PGG FM+G RS + SSSFSSL+LSSTT
Sbjct: 59  MPEFNPYDQKNPFKTLPQEL-NNSTP-TTTTGAPGGLFMVGPRSNNNSSSFSSLKLSSTT 118

Query: 61  SSRFSCLHDSKNSCLQVRAKRKR 83
           SSRFSCL+DSKN CLQVRAK++R
Sbjct: 119 SSRFSCLYDSKNGCLQVRAKQRR 139

BLAST of Tan0020099 vs. ExPASy TrEMBL
Match: A0A6J1DL17 (protein indeterminate-domain 2-like OS=Momordica charantia OX=3673 GN=LOC111021044 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.8e-14
Identity = 53/78 (67.95%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 1   MAEFNPFDHKNPLKSLPQELSNNSSPFAASVG--TPGGSFMIGARSSISSSFSSLQLSST 60
           M EFN +DHKNPLKSLP +L +NS+PF A V     GG FM G  SS SSSFSSLQLSS 
Sbjct: 264 MPEFNLYDHKNPLKSLPWQL-DNSNPFPAPVAATASGGLFMAGPGSSNSSSFSSLQLSSA 323

Query: 61  TSSRFSCLHDSKNSCLQV 77
            +SRFS LHDSKNSC QV
Sbjct: 324 AASRFSYLHDSKNSCFQV 340

BLAST of Tan0020099 vs. ExPASy TrEMBL
Match: A0A5D3D2F3 (Protein indeterminate-domain 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00180 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.7e-13
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1   MAEFNPFDHKNPLKSLPQELSNNSSPFAASVGTPGGSFMIG--ARSSISSSFSSLQLSST 60
           M EFNP+D K P KSLPQEL NNS+P   + G PGG FM G    ++ SSS SSL+LSST
Sbjct: 268 MPEFNPYDQKTPFKSLPQEL-NNSTP---TTGAPGGLFMGGHYRNNNNSSSLSSLKLSST 327

Query: 61  TSSRFSCLHDSKNSCLQ 76
           TSSRFSCL+DSKN CLQ
Sbjct: 328 TSSRFSCLYDSKNGCLQ 340

BLAST of Tan0020099 vs. ExPASy TrEMBL
Match: A0A1S3BT63 (protein indeterminate-domain 2-like OS=Cucumis melo OX=3656 GN=LOC103492898 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.7e-13
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1   MAEFNPFDHKNPLKSLPQELSNNSSPFAASVGTPGGSFMIG--ARSSISSSFSSLQLSST 60
           M EFNP+D K P KSLPQEL NNS+P   + G PGG FM G    ++ SSS SSL+LSST
Sbjct: 247 MPEFNPYDQKTPFKSLPQEL-NNSTP---TTGAPGGLFMGGHYRNNNNSSSLSSLKLSST 306

Query: 61  TSSRFSCLHDSKNSCLQ 76
           TSSRFSCL+DSKN CLQ
Sbjct: 307 TSSRFSCLYDSKNGCLQ 319

BLAST of Tan0020099 vs. ExPASy TrEMBL
Match: A0A067HHA2 (C2H2-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g010444mg PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.2e-06
Identity = 44/86 (51.16%), Postives = 50/86 (58.14%), Query Frame = 0

Query: 1   MAEFNPFDHKNPLKSLPQEL------SNNSSPFAASVGTPGGSF------MIGARSSISS 60
           M+EFN FD KNP+KSLPQ+L      S N        G  GG F      + G   SISS
Sbjct: 176 MSEFNNFDPKNPMKSLPQDLVPMPFKSVNMGGGGGGGGGGGGMFSSSSGTLFGGPRSISS 235

Query: 61  SFSSLQLSSTTSSRFSCLHDSKNSCL 75
           S SSLQLSS +SS F+ L DSKN CL
Sbjct: 236 SSSSLQLSSNSSSGFNYLQDSKNGCL 261

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038876751.11.4e-1674.32zinc finger protein GAI-ASSOCIATED FACTOR 1-like [Benincasa hispida][more]
KAE8646332.18.8e-1671.05hypothetical protein Csa_016679, partial [Cucumis sativus][more]
XP_004136179.18.8e-1671.05zinc finger protein GAI-ASSOCIATED FACTOR 1 [Cucumis sativus][more]
XP_022153576.11.4e-1367.95protein indeterminate-domain 2-like [Momordica charantia][more]
KAA0068031.11.2e-1266.23protein indeterminate-domain 2-like [Cucumis melo var. makuwa] >TYK18097.1 prote... [more]
Match NameE-valueIdentityDescription
A0A0A0K5A71.2e-1871.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G395230 PE=4 SV=1[more]
A0A6J1DL176.8e-1467.95protein indeterminate-domain 2-like OS=Momordica charantia OX=3673 GN=LOC1110210... [more]
A0A5D3D2F35.7e-1366.23Protein indeterminate-domain 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A1S3BT635.7e-1366.23protein indeterminate-domain 2-like OS=Cucumis melo OX=3656 GN=LOC103492898 PE=4... [more]
A0A067HHA25.2e-0651.16C2H2-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g010444... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0020099.1Tan0020099.1mRNA