Tan0020021 (gene) Snake gourd v1

Overview
NameTan0020021
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMuDRA-like transposase
LocationLG09: 8261574 .. 8262353 (-)
RNA-Seq ExpressionTan0020021
SyntenyTan0020021
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACAAGTGGATTTTCATTCGTTACGAAGGTGATTGGCAGGAGGACTCATGGACTTGTACCGGAGGACAAATGATCGGTATCGTGGTGCCGATAACGATTATGCTCGAAGAATGTAGGTCTGAGGTTTACGATGTTACATCAATTAATGAGTACGAGTATGAAATTGAAATGAGAGTTAAATTCAATACAGAATATCCCCCACCACCAATGTACATAAGTAACGATCAAGATGTTCGATTTTTTATGAACTATCTATACGTGTCAAGAGCTCAAGTATGGGTAACAAATGTATAAAATAAGTGAACAAACGACGGGTTGGAGAAGGATGATGATTCTGGTCAAGACCCAGAATACGAACCTAGGCAGGGCGATGAATGTGATTCAGATGAAGGAGTAGAAGAGGGTGTAATGGTAATAGAAAGCGATGAGTATGTTGAACATGATGATGATGATGAAGAAGAAGAAGAAGAAGAAGAATATGAATCAAAAGAGGGAGAAGATGGAGACGATGTCAAAGCTGGGCTTGATTTTGGCCATGTACAAGATACATAATGGTTTAAGACGTCAGATATTTTAAATCTATCACAGGCGACGCCATGTGGTTTAGGTCCTACCCCTGAGAAAGAAGTCCAACCTTTTTTAGGTGGTAACTTGTACGAGTGGGGTGATTATTCAGGGTACGCTATGAATGTTGATGATGCCGAGACCCGTTCACATTTGCTGCAAGATTCAGTACCCTATGGTCGAAGAGGCTCATGCCCTGAAGTTAGTTAG

mRNA sequence

ATGGAGAACAAGTGGATTTTCATTCGTTACGAAGGTGATTGGCAGGAGGACTCATGGACTTGTACCGGAGGACAAATGATCGGTATCGTGGTGCCGATAACGATTATGCTCGAAGAATGTAGGTCTGAGGTTTACGATGTTACATCAATTAATGAGTACGAGTATGAAATTGAAATGAGAGTTAAATTCAATACAGAATATCCCCCACCACCAATGTACATAAGTAACGATCAAGATGTTCGATTTTTTATGAACTATCTATACGTGTCAAGAGCTCAAGATGATGATTCTGGTCAAGACCCAGAATACGAACCTAGGCAGGGCGATGAATGTGATTCAGATGAAGGAGTAGAAGAGGGTGTAATGGTAATAGAAAGCGATGAGTATGTTGAACATGATGATGATGATGAAGAAGAAGAAGAAGAAGAAGAATATGAATCAAAAGAGGGAGAAGATGGAGACGATGTCAAAGCTGGGCTTGATTTTGGCCATGCGACGCCATGTGGTTTAGGTCCTACCCCTGAGAAAGAAGTCCAACCTTTTTTAGGTGGTAACTTGTACGAGTGGGGTGATTATTCAGGGTACGCTATGAATGTTGATGATGCCGAGACCCGTTCACATTTGCTGCAAGATTCAGTACCCTATGGTCGAAGAGGCTCATGCCCTGAAGTTAGTTAG

Coding sequence (CDS)

ATGGAGAACAAGTGGATTTTCATTCGTTACGAAGGTGATTGGCAGGAGGACTCATGGACTTGTACCGGAGGACAAATGATCGGTATCGTGGTGCCGATAACGATTATGCTCGAAGAATGTAGGTCTGAGGTTTACGATGTTACATCAATTAATGAGTACGAGTATGAAATTGAAATGAGAGTTAAATTCAATACAGAATATCCCCCACCACCAATGTACATAAGTAACGATCAAGATGTTCGATTTTTTATGAACTATCTATACGTGTCAAGAGCTCAAGATGATGATTCTGGTCAAGACCCAGAATACGAACCTAGGCAGGGCGATGAATGTGATTCAGATGAAGGAGTAGAAGAGGGTGTAATGGTAATAGAAAGCGATGAGTATGTTGAACATGATGATGATGATGAAGAAGAAGAAGAAGAAGAAGAATATGAATCAAAAGAGGGAGAAGATGGAGACGATGTCAAAGCTGGGCTTGATTTTGGCCATGCGACGCCATGTGGTTTAGGTCCTACCCCTGAGAAAGAAGTCCAACCTTTTTTAGGTGGTAACTTGTACGAGTGGGGTGATTATTCAGGGTACGCTATGAATGTTGATGATGCCGAGACCCGTTCACATTTGCTGCAAGATTCAGTACCCTATGGTCGAAGAGGCTCATGCCCTGAAGTTAGTTAG

Protein sequence

MENKWIFIRYEGDWQEDSWTCTGGQMIGIVVPITIMLEECRSEVYDVTSINEYEYEIEMRVKFNTEYPPPPMYISNDQDVRFFMNYLYVSRAQDDDSGQDPEYEPRQGDECDSDEGVEEGVMVIESDEYVEHDDDDEEEEEEEEYESKEGEDGDDVKAGLDFGHATPCGLGPTPEKEVQPFLGGNLYEWGDYSGYAMNVDDAETRSHLLQDSVPYGRRGSCPEVS
Homology
BLAST of Tan0020021 vs. NCBI nr
Match: XP_038902319.1 (trichohyalin-like [Benincasa hispida])

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-08
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 1   MENKWIFIRYEGDWQEDSWTCTGGQMIGIVVPITIMLEECRSEVYDVTSINEYEYEIEMR 60
           M  K + I Y G W E+     GG++IGIVVPIT+  EE ++ +Y + +I+  E+++ MR
Sbjct: 233 MTRKCVLIGYRGHWDENQNLYVGGELIGIVVPITLKYEELKAHIYRIENISCLEFDVVMR 292

Query: 61  VKFNTEYPPPPMYI 75
           VK+  ++  PP YI
Sbjct: 293 VKYKLDFEAPPHYI 306

BLAST of Tan0020021 vs. NCBI nr
Match: XP_022154925.1 (uncharacterized protein LOC111022071 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 8.1e-08
Identity = 26/88 (29.55%), Postives = 59/88 (67.05%), Query Frame = 0

Query: 4  KWIFIRYEGDWQEDSWTCTGGQMIGIVVPITIMLEECRSEVYDVTSINEYEYEIEMRVKF 63
          K +FIR+ G W++++ +  GG++ GI+VP+T+  +E ++ ++ +  +++  Y++ +RV +
Sbjct: 5  KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 64 NTEYPPPPMYISNDQDVRFFMNYLYVSR 92
          +     PPM++++D D+RF +    VS+
Sbjct: 65 HLACDSPPMFVTDDDDLRFALVQEQVSK 92

BLAST of Tan0020021 vs. NCBI nr
Match: XP_038888098.1 (uncharacterized protein LOC120078004 [Benincasa hispida])

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-07
Identity = 59/204 (28.92%), Postives = 94/204 (46.08%), Query Frame = 0

Query: 1   MENKWIFIRYEGDWQEDSWTCTGGQMIGIVVPITIMLEECRSEVYDVTSINEYEYEIEMR 60
           M  K +  RY   W E+     GG++ GIVVPIT+  +E ++ +Y V ++N  E+++ MR
Sbjct: 120 MTEKCVLFRYGSHWDENQNLYVGGELTGIVVPITLKYKEFKAHIYRVANVNCLEFDVVMR 179

Query: 61  VKFNTEYPPPPMYISNDQDVRFFMNYLYVSRAQ----------------DDDSGQDPEYE 120
           VK+  ++  PP+YI ND DV  F+    +SR Q                 D  G D +YE
Sbjct: 180 VKYKLDFEAPPLYIQNDDDVYIFLCLDDLSRVQLYVTLKSYHDENVKMIHDGIGVDRQYE 239

Query: 121 PR---QGDECDSDEGVEEGVMVIESDEYVEHDDDDEEEEEEEEYESKEGEDGDDVKAGLD 180
                  +ECD    +   +  +  D     +D+    + + E +      G++  AGL+
Sbjct: 240 ASYEFNQEECDIPLSMNTQLSTLSID-----NDNIHAVDLKRETQCYGPVFGNERSAGLN 299

Query: 181 FGHATPCGLGPTPEKEVQPFLGGN 186
           F     CG    P +E  PF+  N
Sbjct: 300 F---MDCG----PSEEHDPFVVDN 311

BLAST of Tan0020021 vs. NCBI nr
Match: KAA0051607.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 5.2e-07
Identity = 30/86 (34.88%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 1  MENKWIFIRYEGDWQEDSWTCTGGQMIGIVVPITIMLEECRSEVYDVTSINEYEYEIEMR 60
          M + WI +R+ G+W E      GG + GIVVP  I  ++ +SE+YD+  ++  +++I++R
Sbjct: 1  MAHVWILVRHGGEWDEGQRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIR 60

Query: 61 --VKFNTEYPPPPMYISNDQDVRFFM 85
             K   E   PP  +SND+D++F++
Sbjct: 61 CIYKIKGEKEAPPFELSNDRDLKFYI 86

BLAST of Tan0020021 vs. NCBI nr
Match: XP_038891939.1 (uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida])

HSP 1 Score: 65.5 bits (158), Expect = 6.8e-07
Identity = 44/142 (30.99%), Postives = 75/142 (52.82%), Query Frame = 0

Query: 10  YEGDWQEDSWTCTGGQMIGIVVPITIMLEECRSEVYDVTSINEYEYEIEMRVKFNTEYPP 69
           Y GDW E+  +C  GQ+ GI+VP+++  EE +S +Y VT+++  E+++ ++VK+  EY  
Sbjct: 45  YGGDWDENESSCIRGQLAGILVPVSLKYEEIKSHIYGVTNVSSSEFDLILKVKYKLEYEA 104

Query: 70  PPMYISNDQDVRFFMNYLYVSRAQDDDSGQDPEYEPRQGDECDSDEGVEEGVMVIESDEY 129
           PP YI ND  +RF +    +SR Q   + +            + DE +  G         
Sbjct: 105 PPQYIRNDDGIRFLLFREDLSRLQLSVTLKS-----------NVDENIRMGF------RN 164

Query: 130 VEHDDDDEEEEEEEEYESKEGE 152
           V +DD   E + +E Y+ ++ E
Sbjct: 165 VSYDDTTMERQYKESYQYRQEE 169

BLAST of Tan0020021 vs. ExPASy TrEMBL
Match: A0A6J1DL08 (uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022071 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.9e-08
Identity = 26/88 (29.55%), Postives = 59/88 (67.05%), Query Frame = 0

Query: 4  KWIFIRYEGDWQEDSWTCTGGQMIGIVVPITIMLEECRSEVYDVTSINEYEYEIEMRVKF 63
          K +FIR+ G W++++ +  GG++ GI+VP+T+  +E ++ ++ +  +++  Y++ +RV +
Sbjct: 5  KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 64 NTEYPPPPMYISNDQDVRFFMNYLYVSR 92
          +     PPM++++D D+RF +    VS+
Sbjct: 65 HLACDSPPMFVTDDDDLRFALVQEQVSK 92

BLAST of Tan0020021 vs. ExPASy TrEMBL
Match: A0A5A7UB55 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001530 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-07
Identity = 30/86 (34.88%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 1  MENKWIFIRYEGDWQEDSWTCTGGQMIGIVVPITIMLEECRSEVYDVTSINEYEYEIEMR 60
          M + WI +R+ G+W E      GG + GIVVP  I  ++ +SE+YD+  ++  +++I++R
Sbjct: 1  MAHVWILVRHGGEWDEGQRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIR 60

Query: 61 --VKFNTEYPPPPMYISNDQDVRFFM 85
             K   E   PP  +SND+D++F++
Sbjct: 61 CIYKIKGEKEAPPFELSNDRDLKFYI 86

BLAST of Tan0020021 vs. ExPASy TrEMBL
Match: A0A6J5W2L5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS3856 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-06
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 0

Query: 1  MENKWIFIRYEGDWQEDSWTCTGGQMIGIVVPITIMLEECRSEVYDVTSINEYEYEIEMR 60
          M    I I Y G W     T T G+  G++VP  I LEE R++VYD+T+++  +YEI M+
Sbjct: 1  MSRLTILISYGGSWVHS--TYTNGKTKGVLVPEKITLEELRNKVYDITNLDPNKYEITMK 60

Query: 61 VKFNTEYPPPPMYISNDQDVRFFM 85
          V +++     P+ I +D DV+FF+
Sbjct: 61 VIYDSTKNAWPVDIVDDDDVKFFI 82

BLAST of Tan0020021 vs. ExPASy TrEMBL
Match: A0A5A7U2Y3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00460 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-06
Identity = 29/86 (33.72%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 1  MENKWIFIRYEGDWQEDSWTCTGGQMIGIVVPITIMLEECRSEVYDVTSINEYEYEIEMR 60
          M + WI +R+ G W E      GG + GIVVP  I  ++ +SE+YD+  ++  +++I++R
Sbjct: 1  MAHVWILVRHGGAWDEGRRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIR 60

Query: 61 VKFNT--EYPPPPMYISNDQDVRFFM 85
            +    E   PP  +SND+D++F++
Sbjct: 61 CIYGIKGENEAPPFELSNDRDLKFYI 86

BLAST of Tan0020021 vs. ExPASy TrEMBL
Match: A0A5D3CZS8 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00720 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-06
Identity = 29/86 (33.72%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 1  MENKWIFIRYEGDWQEDSWTCTGGQMIGIVVPITIMLEECRSEVYDVTSINEYEYEIEMR 60
          M + WI +R+ G W E      GG + GIVVP  I  ++ +SE+YD+  ++  +++I++R
Sbjct: 1  MAHVWILVRHGGAWDEGRRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIR 60

Query: 61 VKFNT--EYPPPPMYISNDQDVRFFM 85
            +    E   PP  +SND+D++F++
Sbjct: 61 CIYGIKGENEAPPFELSNDRDLKFYI 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038902319.12.8e-0840.54trichohyalin-like [Benincasa hispida][more]
XP_022154925.18.1e-0829.55uncharacterized protein LOC111022071 [Momordica charantia][more]
XP_038888098.11.8e-0728.92uncharacterized protein LOC120078004 [Benincasa hispida][more]
KAA0051607.15.2e-0734.88MuDRA-like transposase [Cucumis melo var. makuwa][more]
XP_038891939.16.8e-0730.99uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1DL083.9e-0829.55uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A5A7UB552.5e-0734.88MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1... [more]
A0A6J5W2L51.6e-0639.29Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS3856 PE=4... [more]
A0A5A7U2Y32.8e-0633.72MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1... [more]
A0A5D3CZS82.8e-0633.72MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..177

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0020021.1Tan0020021.1mRNA