Tan0019966 (gene) Snake gourd v1

Overview
NameTan0019966
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSWIB domain-containing protein
LocationLG03: 17328977 .. 17343564 (-)
RNA-Seq ExpressionTan0019966
SyntenyTan0019966
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCCATCCCCTTCATCTTCTACAACTTCAACCACACCTCCCATCTTCGCGTGAAACGAGCGCCGCCCATCCCTTTCTTCTCGACTTTCTTCTCTGACATCCTCTCCCTCGTTTTCTTCTTCATCTCGTAGACCCACGACTCCGGCAACGACACACACAAACGCACGCTCTCAACCCAGCAACGACAGAATCGCGATGGCGGCGCAGCAGAGGATCGACGCGAGGTTCGGTAGGCAGAGCAATGCACGGTGACGTCTTCCTCAACGTGTTTGGCTTGAGATTGTTCGAGCATCAACGTTCCCCTTCTTTACGGTAAGGTTCGACACCAACCTACACTCCGTTCAGCCTCGATTTGGATTATCCATACCTTAAACATCTCTAATTTGGAGTTTTAGGCTCGCTCGGACGTCGACCTGCCACTTTAGAGGTCGTTTGGTGCTAAATCCACGTTTTCCAGCAAGACCCACTCAGTTTTGAATTTGAGAATCTCTTCTATTCGTGTTTCTCAACTCGTTTTGGTCTAGAATCGATTACCTATTGACTGTGAGGTTTGATTCTGCAACTTTAAACTCTGTCGATTGCTGTCCAGATTGCTGTCCGGCGCATGTTTATGTGTTGGTTGTTAAGCTTTAGAGTTTTTAGTAGTTTTGATTACTCTTTAGACTCTGTAAATTTAGTTATAACGCGTAGTAACCTTCAATGTTGCTGTTCAGAATCTATTCGAACACCTTTGAATAGCAAACAACAAGTGTAATGGCTCTTTCGGTAAGTTTTAATGCGTTTAAGATCTTTCGCAAATCACTCTAGGTGTTATAGCTTTGGTGCTAACACATAAGAGCCTTTTGTTTGCAGTTTCAACCCAATTAGATCTCATTCAAACACTCCCAACATGTATTCGAGTCCATTTGGTGAAGTTTGGTAAGCTTCGCGGTTTTGGATTTCTATGCTTGAAGCTTTTGGTTGGTGTTTTCCATTTCCAAATGATGCTTTTGGATTCTTATTTTCAGTTTTAGTGGGACATCCCTTCCGTGGTTGGAAGAAAGTCCCCTGGTTAGCCTTCGTTCGTGCTTTCTTTTGGACCATCTGGATTGAATGGAATGACCGACTTTTTAGGGAAGTCTCTTCTACTTTTGATTGTTTTTGGGAATTGGTTCTTGTTAATGCATTCTTGTGGTGTAAAGATGGGAACACACCCTTCGATAATTGATAGTTCTTCAATATCGAAGGGGGGTTGTTCTATTAATCCGAGAAGAAAGATCAGGTAACAGTCACAAAATGCACAACAATTCGAGAGGCTGGCTCCCTCCTATAGCAACAACTTTCGAAAATAAAACCTACCTTTCACAGAGACACAAAAACCCTTTTAAAACCCTTACTCCCATGCCCTTTACACGCACCACACGAATTATTCCCTCGTGGTCCTAGTTTCCCCATTCACATTTACCCTCTTGCCCCTCCTAAAGTATTTTTTGATAATAGGGGGTCTACTGCCACCTTGTCCTCAAGGTGAAATTGAGGATAGTGTTTCTTGATCTCTTCGTAAGCTTCCCAGGTGGCATCACTGTGTGGCCTCTTAACCCATTGGATTAAGCATTCCCAGATATAGAAGTCTTCGTTCCAGCGATAGCCCAACACTTCAGAAGGTGTTTCAATCCACTCATATTCATCGGAGAACCGTGGGGGAGCAGATTGAAGAACAACATGCGACCCTATCATCTTCTTTAACTGAGATACGTGAAAAACAGGGTGGATGGTTGCGGTGGGAGGCAGATGCAACTTATAAGCGACTTGACCTATACGCTTCAACACTTCGTATGACCTGTAAAATTTTGGTGACAATTTTTCACTCCTCTTTGCTAGGGACTTCTGTCTGTAGGGCTTAAGTTTTAAGTACACCCAATCCCCTGGTTCAAACTCAACCTCCCTTCGATGGCGATCAAACTTTTTTCTCATCCTCTCCTGAGCTATTGTTCCTTCAAAGCTGCCAAGGCCACATCCTTGTCGAGTAATTGTTGTTCCAGAGTACAATTTGATGTTTTTTCTCTCCATAAGAAATCAACGGTGGTGGCGCTCTCCCATACACGACATTGAAAGGAGTGGTATTAATGGATACATGATAGTTGGTATTATACCAATATTCTGCCCAGCTAATCCATTTCTCCCATTGTCGCGGTTGTTCATTGCAGAAGCATTGGAGATTGGTTTCGAGGCACCTGTTGACTCTCTCTGTTAGTCCATCTGTTTGGGGATGAAAAACAGTACTCTTCTTAAGGCGGGTCCCCTGCATCCAAAACAGCTCACTCCAGAAATTACTCAAGAAAATGACGTCTCGATCTAATATTATCGATTTCGAATAGCCGTGCAGTCGAACAATCTCCTTAATAAATAGGGTTGCTACCTCTTTAGCCGAAAAAGGATGTTTCAGAAGGCAGAAATGAGCGTACTTACTGAGGCGATCTACTACTACCAATATTGAATCAAAGCCATGGGATTTGGGTAGACCTTCAATGAAATCCAAGCTGATTTCTTCCCAGATTCGATCTGGAATAGGCAATGGTTGCAGTAAACCTGCTGGGGCCATGACCTCTGCCTTATTCCTCTGACAAACACTACACTTTGCAACATAATTTTGCACAAACTTCTTCATTCCCTTCCGACAGAGTTCACCTTTCATTCTCTTATAAGTGCGAAGGAATCCCGAGTGACCCCACAAAACTGAGTCATGAAACATCTGCAAGATGGCTGGTATGAGAGTGGATCGACTCGATATAACTAACCTATCCTTGTAACGGAGTTGCCCCTAATTTAATGAAAATTTGGGGTGACTCGTAGGATCAACCTCGATATCTCTCATTACTTTGGTCAATTCGTCATCCTCCTTAATTTCCCTTCGGATAATATCAATATCAATGATCCTTGGGGCAGATAAAAAAGAACACTCTCCTGTCTGACGCATTTGGGACAAAGCATCTGCTGCTCGATTCAAGATCCCAACCTTATATTTGATCTCAAAGGAGTATCCCAAAAGCTTCATGAGCCATTTTTGGTATTCAGGATGGACTTCTCGTTGCTCGAACAAATTTTTTAGCGCTCGTTGGTCTGTTAAAACGATGAATTTCTGCCCTAGAAGATAATGGCGCTACCTTTGCACTGCAAACACAATTGCCATTAATTCTCGCTCGTAGACCGATTTCAACCTTGCTTTCTCCGTCAGCGCTTGGCTAAAATAAGCTATTGGTCTCTGGTTCTGTGTAAGCACGACTCCCAAGCCTACCCTCAAAGCATTTGTATCAATAATGAATGGCATGGTAACATCAGGTAATGCGTGTACTGGAATGGTCGTCATTGCCTTCTTCAATCTCTCAAAGGCTTCAATGGACTCCGTGCTCCAATGGAAGGAGTTCTTTTTAAGCATGTGATGTAAGGGTGAGGCTATGCTTTCGTAATTCAACACGAAATGACGGTAGTATCCTGTGAGACCCATAAATCCCCCGAGTTCTTTCAATGAAGAAGGCTGAGGCCAATTCAACATTGCTCGGATCTTCCCTTCATCCGCTTCGACTCCCTTTCCGGATATCCAATGTCCCAAATATTCTATTCAACTTTGGCCGAAGCTACATTTCTTATCATTTAGAACTAGTCTGTTCTCTTTCAGTACATTGAACACAAGTTCCGAGTGTAGTAGATGAGCTTCATAACTGGGGCTGGATACAAGGATATCATAAAAAAAAAACCAACACACATCGTCTAAGGAAAGGGCGAAATCCCTTGTTCATTAGAGATTGGAAGGTCGTAGGAGCATTTGTGAGGCCGAACGACATGACTAGGAATTCGTAATGCCCCTCGTGCGTGCGAAGCACAGTTTTCTCAATATCTTCTTTGCTCATTCTAATCTAATGGTACCCTGATTTCAAATCCAGTTTCGAAAAAATGGTTGACCCGTTTAACTCGTCGTGTAACTCCTCGATCATTGGAATGGGGAACCTAAGAAGCACGGACACGGACACGGACACGGACACAGCGACATGCCAATTTCTAAAAATGTAGGACATGGACACGTTGGGGGACACGTTCTTTATTTTATTTTTTTAGGTAATATGTGTGTATATATTAAATAATATGTGCTTCATTAATACATAAATGACAATACTAAGAAGTTCAATATCCAACATGTGAATACAACAAAATATTACAATACAAATGAAAGTACTAGAAAGTTAGAAAGTCATTCTTCCATACAAAAAAAAAGACAAACTCTCCTCTCAAACTTCTACTATGTCTTCATCTCGATCAGTATCACATTTGTCAAACCCACTACCACTACCATCATCAGTAAAGACCACAACCTCTAAATCTGGTTCATCCAATGATAAATTTGCTACTTCAAGCATTCCAACTTCCTCAAAAGAATCAAAACAATCTCCAGCAATATCCCATGATTTCGTCTCTCCTTGTGAATATCCTGGAGTTCTTCTTGACAAAAGACGCAAATTACTATGGACAAATACCAAATCATCTGCACGTTGAGGCATCATCTTATTTCGTCTTACAGAGTTGATAAATGAGTAGGTGCTCCAATTTCTCTCACAACATGAAGATGATGAAGGTTGTACTAGTAGCTTGAAAGCAATTGATTGAAGGATTGGTGCATAGACACCATGGACAACCCACCAATCTTTAGGATTTGAACGATACCTTTCACTTATGGAATCAATGTCGGAAAAATCTTTTCCCTTTGTTGAAAAATTAGCAAACTCCAGGTTCACTTTTATACGGTCTTCTGGATCAGAAAAATATCTCTTGAGACACCTCCTTCTCTCACGAGTTACTTCAATATCTTTATGTGGAGGTACTCGATTAGGGCCTTCTTTAAGCCATTGCTCACTATAGTACCTAAATATTTATATAAGTTAAGAAAATGTTGAACTTTAGAAATTATAATACAAATGGAATAAGAATGGAAAAAATGTAAGGATCAAAAAGTACCTTGGGTTCAAAGAATGTGCCAAGCAATGGAGTGGGGTATTGTTCTTGTTCCAACGATCAATAAGAATATTATGCACCACGTCATAAAAGGAAGAGAATTCATCTCCATGTTTTCCTTCATGTCTAAATATTGCCATCTTCACCTTTTCAATCATAGTGTCCCACATGTCATAAACCAAATGAAGGCTAGGTGCATCAGTATCACAAACCCGAATCATATCATATATAGGTGAGGTGAAGGAAAGGATATAGTCGATTTTGTCCCACCATACATCATCCAACACCAATTCTTTCACACGTCTTGCTTTTCCTAAATCATCCTCTCTATAACATGTCCATTGGCCACTAATGGCCATAGCTTGCAAACCTCCTTTAATGAGTTTTAAACCTCTTGAGCATAATAATGACGGAAGCAAAACGTGTTTCAGCCACAGAAAGCAATTTCAAAGATACAAACTCATTAAAAATCGCAAGTCTCATTGAATGATTCATGATAAAGTTCTTCACAACCATCACATCACTAGCAATTTCAGAAATCCAACAACATTCCTCATACACTAGCTGGTTGTTCTCAACATTCTTTGCTGCACATATATTCTTTAAGGCAAGATTAAGAGTATGCACCACACATGGTGTCCATACAATTGTTGGAAATTGTGCTTCAATAATTTGCCCCGCACCCTTGCAATTAGGAGCATTATCAGTTATCACTTGAATAACATTTTGAGGGCCAACTTCATTAATGACTTCCTTCAACAAGTTTGCGATAAAATACTTATCTTTGACTTCACCAACAATCTCATCGCTTTTAGAAACATTGGTTGACCGTCTGTAATTGCCATAAAGTTTATCAAAGGTCTTCTTTGTGAGTCACTCCATCCATCACTCACAATACTCACACCCTTTTCACTCCATGTGTCTTTAATGGTTGCAATAATCTTTGAACATTTGCCTTCTCTCTCAAGAAGAGAGTTGTTCTCAACAAATTGTATCCAGTGGCACATATCCCGACAATAAATTATTTGCAAAGATAAGTAAATGCACCTATAAAATGGGGATTTCTTGCTAAATGAAAAGGCAACCACAAGAATAGAACATCCGAGCAATAAGAGCGTGTAATTGGTCCCTTGATGCCATGTTAAACGATTTCTCTATTGCACTTGGAGCACCTTTCCTTTTCTTTTGTTCAAAATTAATTGTACTAGGAGGTTTACTTACACTAACTCCACCAATAGATATGATTGGAGGTGGTAAAGGAATGCTTTTAGGAGTTTTTTTAGCCATACGATTCTTTGCCTCGTCTTCCAATCTATGCATATCAACCATATCTTGGGGGGGTAACTTTTAGACATGGTCCAATTCCATGACCATTTAACTTCAATAAATGAGCTCTTACCTTTGTATAAGAACTCTTCTTTATGCAATGACAAAAATTACATTGTCATGAGAAATTGCCTCCTCCTTCATTCAATTTTTGATGCTTGGTCACATATTTCCAAAGTGGCTTTGATTCATCCTCAATATTATCACTAGAGATTGAAGGGAGTGACGATTGACTACAATTACTAGATGAGGAAGAGGCCATCTAATAATGAAAAAGAAAACCAAACTTTTTTTTGTTACTAAACACTTAAATAAACAATAAACAGAGAACAAATTTTTTTTAGTAATAAACAGTAAAGAGACTGATGGTTTAGGAACTGTTTTAAAAAACCCATAACCAAAAACCCCATAACCAAAAACCCCATAACCATGAAGAAACTGTTTTAAAAAACTCAACCAAAAAAACACAACAAACCTTTGAGGTGGTGCGATGCGAATGATGGTTTAGGAAGCACGGCGACAACGAAGTTGCAGCGTCGAAGCGGCGCAGCCGCCGCGTCGGGCGTGCCAGGTCGCCGGTTTCGTTGGAGGGCAGCAGAAGTCGCCGGTTTCGTTGGAGGGTTGGTCTGGTGCGATTGTAAAGAAGGAGAAGTCTCAAGGTGGTGAAGTCGTGCGATAAGTTTTGTTTAGGGCTGGCTGTTTTTTTATTTTCTTTTTATTATTATTATTTAATTTATTTTAAACGTAAAGTTGGGCCAAGTTAGGCCCAACGGTTTTTTTTCTCTTTTAAATGGTAAGCGTGTCCCCCAACGTGTCTCCAGCGTGTCCTTGGAGTGTCCGAAAATAAAAAAAAAAAGGACACGAAAATTGCGTGTCGGACACGTGTCCGGACGTGTCCGTGTTCGACACGTGTCCGACACGGACACTTCGCCAAATATGAAGTGTCCGTGCTTCCTAGTGGGGAACTTATCTGGTATGGTGACCTTGTTCAAAGCTCGATAATCAACACAGAATCGCCATCCCCCATCCTTCTTCTTAACTAGCAACACTGGACTTGAGAAGGGACTCGTGCTGGGCTGTATGATGCCTGAAGAAAACATCTCTGTCACTAACCTTTCGATTTCGTTTTTGTATGGCCTAATGTTCACTGGCCCCTTCCTTTCCGCCAGAATAATCCGTTGGTCCACGTCTCTTTCTGGAGGCAAATCTCTCGTTTCCACGAACAACTCGACATATTTTGTTTTAAGTTGTCGTAACTCATCTGTAAGAATCTCCTCTTCCCGTTTGGTGCTCGAGCTACTGCCTGCCGTCAGACCTCTCTCCTGGAGACCCACCAAGAGGCCTTGGTCTTCTTCGTTCCAATCTTTCAACATCATTTTTAATGAGACTTGAGCCTTTGTTAAGGATGAGTCTCCTTTCAATGTTATCTGACTCTTTCCGACTTCGAAGGTCATTGTGAGCCCTTTCCAGTCGGCTTCCATCACCCCTAAGGTTCTCAACCATAGCATCCCTAGGATTACATCAACTCCTCCAGGTCGATAGGTAGTAGTTCCTCCTGGAAGGTCATTTCTGCCAAATGGATCATCACATCTTTGCACAACCCCTGTCCTGTCACTGTCGAACCGTTTCCCATCACTATTCCATAGCCTAACGTGTCAACACGAGGAAGTTCCAGCTCGTTGGCCAGGTGTGGAGAGATGAAGTTATGGGAGACTCCACAGTCAACAAGTATAACCACATTTCTTCCTTCGATTTTCCCGCGGAGTTTCATTGTGCTTGGATTTGAAATGCCCACCAACGATTTTAAGTCGAGCTTGATATGTTCCACCAACAGTTCTCTAAACTCAGTTTCGGCGAAAACCCACTCTTCTTCAGGTTCAATCTCCTCTTGTTTTACTTTGATATCTCCGGAGCTGCTCTCCCACACCACTCTCAATTCCCGAAGCTCAAGTTTCTTGCAACGGTGGTCTTTCGAATACTTCTCATCACAACAGAAACATAGTCCCTGTTCCCTCTTGGCCTGGAACTCAACGTCAGTCAACCTCCTTGGCAAGGGTCCACGTCGGTTAGGGTTGGGGTTTTCAAGAACTGAGATGGATCGTAAATAATCGTTGGGCCTTTGATTACTCCCTCCGTTATTGGGCTCGGCTTCTTTTCATCTCCTTCCCACCCATCATCCCAATCTTTTCCAGCTATCCTTAGGGCAAACTCTTTGTCTTCTATCAGTTGGGCCTGTTTCATAGCATCCTCCAGGCCTTTCGGTTCCCTGGTAATAACGGCCACCCTGATCGCCAGATTCAGACCGTTGAGGAAGGTATTTTCAAGAACGTCATCCGCGAGTCCTGGTAATGGACCCGAGTACGATTCAAATTTTTTTCGATAATCCCTTACCTTTCCATCTTGTTTGATTGAAAGGAATCATTCGCAAGGATTGCCCTCTTGGGTAGGACGATACCTCATGAGCAACCTTTCTCGCACATCATTTCAGTCGATGATTTTCCTCCGATTATTCGTCGAACGAAACCATTCGCTGACATCGGGTTCAAAACTGGAAGCATGTTGTGTGTTCGAATTTTGCTATTTATATTATATATGTCTTTCTATGAACTGGTACACGTTATGTGTTATGTTATGGTTTGAAATGTAAGCATTTCCTCCTATGGGGAGATTATTTGAGATTGTATGATGCTGTGATGCTTATGATTGAAAGTATGTTGATGTGGTTGTTGGGCTGAAAGCATGGTCTAGAAAGCATGTTTGCATGGTCTAGAAAGCATGTTTAGGATTGCATCTAGGTTGTGTGGACCTAAGTAGGGAGGTCAGAGGACCTCGAGTTTATGGTGAAGAATGGTGTTAAGTTCTCGAATAAATGTTTAAGAATTGACATTGTGCTGACAAGCAGTGAGTTGGTTATCATGACCTCGAGTAACATGGTCGAGGGTTGATATGATTTAAAGAAGGAAAGTGGATGTCAACACCTCAGGTAACACGGTTGGGGGTTGATGTGGAACTATTGGGTGACGACACCTCGGGTAACATGGTCGGGGGTTGGTGCCAATCTTAGATAAAAAGAAGCATCGATACTTTGGATATATGGTCAAAAGTCAGTGTGATGAGTCTCGAGGCAAGTATTAAGATCTTGGGTTAAATGGTCAAGGGTCAATACGTTACTAAGTCATCAACACCTTAGGTAACATGGTCGAGGGTTGGTGCACACTTTGAGACCTTAGGTAGTCAAGGATCAAACATTGAGCTCCGTAGAGAAGCATTGAGACCTTAGATAATACGATCAAAGCTCAATGCAACTCGAATGGTCAGTCTTGGAGAGTTTTGGTGAAGGTTTGCTAAGTCATCAATACCTTGGGTAACATGGTCAAGGTTTGGTGTACAGTTCGAGACCTTGGGTAAAAGGTCAAGGGTCGAACACCGAGCTCCGTAGAGAAGCGTTGAGACCTTGGATAACACGGTCAGAGCTCAATAAAACTCGAAGGGTCAGTCTTAGAGAGTTTGATGAAGATTGAATATGAGTTTGGAATGAAATTGTGAATTTTGCTTGTAATTTTTTTTTCTTCTCTAAACTGGTTTCTTGATTTGAAATCATTGCCCTTTTTTTCTCTTGATTTCTCGAGGAATGCGTATTTCGTTTAACACTCTGAGATCGAAACTTTATTGTACATAAGATGCTTGATAAAATTCCCTTAAATCAATGCCCAAGTTTTGTGCAAGAAGTTTTGGTTATTGAATGAGCTTATTGTGCCTCAATCTGGAGGACATTCCGTTTTTCATATTTTCAAAACTTCGTTTCATTAGCGAGTAAACAAATTTTTGTGTTTTTCCAGTGGAAGGAGGAAGCAAACTAGTTGTGCAGAAGAATGCTGCCACAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCCAACCTCATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAATTTGTAGGACAGTCCCAAATTTCTCGGTTGGGCTGCTTCAAGTGCGTATGGTCATATATCAAAAGCAACAATCTTCAGGTTCTTTATTCGTCTCATTTTTATGGGCTTTCTGATTAGTATTAGATGCATATTGATTATATTGCTATCAACGTGATAGAGTGCTTCCTTGCTAAATCTACTTTCAAAATATTTGCCATAGATTCTACATTTTATTCTGGTTAAAATATAGTTTAAAATGGTTAAAATATAGTTTAAAAAGGGGAAGAGGGAGAGGGACAAAAGGAAAAGAGCAGTCAAAGAGGAGTAGAAAGATTATAAGTCTGAAGACTCACGATGAAAAAGAATCTCTTGGAATGGAAGTTATGAGAAACTGACAGAGGGTCAAGGTCCAAGACAAAATACAGGTAACAAAACCATCCTTTTAGAACGAAAGATTGTACAGGTTGAGAAAGAGATTACAAAGGCAGTTTGATGGAATCCAAACCGAACTAGAATGATATTGACTTGGAGAGATCTTCACTTGATAAATGAAAATTTTATCATGGAATGAACGAGGCCCAGGGCCTCAATCAAGAAAATTATTTAGCAGCAAAATATGGGAATTGTCCGTTTACAAGGGACTAAACTTTTAGCGATCAATTACCATTTGATGAAATCCATTTGGAGTTCAACTCAAATTGGCTGGACATCTCTTGATGCAATAAACTCTACGGGTGGGATCCTAATTTTATGTAGCGAGCCAGACTTCACAATCAAGGAAGTAATTCAAGGTTTCTCTACCATTTGAGCTTCGTGATATTGAAAACTATCTCATCGAGCATGGTTTATGTATTATGGCCATCCCACCTTTACCACCACCTCCAAAACCTAAAAAATCATTCACCAATAATGGAAACAGGAGTTAATTGCAGAGGGAGTTACAAAATTTGGAAACAACAGTCCATTATGATAAAACTGCCACATTGACTTTGATGGAGGGATCTTCACTTGATAAATGAAAATTTTATCATGGAATGTACGAGGCCTGGGGCCTCAATTAAGAAAATTATTTAGCAGAAAAATTCGGTGATTGCCCATTTACAAGGGACTAAACTTTCAGCGATCAATTACTATTTGATGAAATCCATTTGGAGTTCAACTCACATTGGCGGGGCATCTCTTAATGCAATAAACTCTGCGGGTGGGATCCTAATTTTATGGAGCGAGCTAGACTTCACAATCAAGGAAGTAATTCAAGGTTTGTACACACTTCTTCCCTAGATTTTCTTTTGGATTACATCAGTGTATGTCTCCTCTGGTAATGATTTTTATGAAGATTTTTGGAGAGAATTAGATGATATGGCTGGTTTAGGTGGTTATCATTGGATCATTGGAGGGGATTTTAATGTCACCCACTGGTCATGGAAAATATGTCCATTCTATCAATCGGAGCATGAACACTTTCAACCAATGGATCTCCAATTATGGTTTGTTAGATATCCCCTTGCAAAATGACTGCTTCACTTGGTCTAGTTTTGGCCCAATGCAATATCTCTCCCTTTTAGAGTCTTAGACAGATTTCTAATCACGGATGGTTGCTCAGGCAAACTTGGATTTGCTACTCTCAGGATCATATCACTTCAGACCCTTATCGCTCGCTCTTACTTTGGGCGACTTAGTTTGAGGACCTTGTCCTTTCCGTTTTGAGAACTCCTTAAGGATGTTGTTTTGGGTTAGTGGAATCAGAATCCTCCATCTCTAGTTGGTTGTTCGGGTCATGGATTTATGATGAAACTAAAAGGGCTAAAAGTTTTCTTGAAGGAGTGGAGTAAATCTCACCGATTTGAGGCAGTTCGGTTGCAATCCCTTGTTACTCAACTACAAATTTTGGATAGTTTGGAAGACACCACCTTTATCAACCTCACAAATTGAGTCCCAAAGCCTTATTCGTGAACAAATTGAGGTTTTGAATGCACAAGACCACATATACGGGAGGAAAAGGTGAAATTGAATTGGCTTAAGGAGGAAGATGACAATACTAAATTTTTTCAACGGAAGAGGAAGAATTCAATTACTGAAATCCTTTATGTGGAAGGAGTTAGCCATATGACTGCGAATGAGATTGAATTTGAGTCAATTGATTTCTACTCAAAATTGTTCACCAAAGATGATGCCCCTCGATTTTTACCCACGAATATTAATTGGAGTCCTATCTCTATAGAATAAACCAATGGTCTTGAAGGGGTGATCACTGAAGAGGAAGTTCGCCAAGTTGTCTTCACTTTAGGCTCTAGCAAATCTCCGGGTCTTGGTGGCTTTACAACTGAATTCTTCAATTTTTTTTTGGGATTCTTTAAAGTCAGATATTATGATCATGATTTAGGATTTTTCCTGTTCTGGTGTTATTAACGCATCTATGAATGAAACTTATCTCTGTTTAATACCCAAGAAGTTTGATTCCAAGTTTGTGCATTGTCCTTTTTCTCAGCGGTTTTGGTTGAGCGTTTTGGATGCTTTTGGATAAGCAATGCCGGTGTCAAATAATATTTTTGACTTTCTTTCTTCCGTTTTGATTGGACATCCTTTCAAATCTGTGAAGAAGTTTTTTTGGCTTGCTTTGGTTTGTGCGTTTCTTTGGAACCATTGGATCGAGAGAAATGGTCGTCAATTTAGGGATGTTTTTACTCCTTTTGATCGTTTTATAGAAATCGTTCTCTCTATTGTCTTTATGTGGTGTAAAGAAGTTCAACCTTTTCTTTTTTTTTTTTTAATTTATCTTTATTATTATATTTTTTATAGTTAATTGGCGGTCTTTCTTGTAATCCACCCTTGGTCCTTGGAGTCTTCTCAATTTCATTAATGAAATTGTTTTTATTATCCCAAAAAAAAAAGAAAAACTTTGATGGGAAGGTTTTCATATAAGGCTACTTCTTGGTGAGGGGAATGGACACCTTGTCCCTTTGCCCGTAGGTTGTATTGCCAGTTTTTTTTTTTTTTTTGGAATGAAGCATCTGTTGTTTCTAATTAAAAAAAGAAAAAAATACTTGTAAATTCAATAGCATTTGGTTTTTGCACTAGTTTGCGGTACACTTTATGAGTGTTCCATTGTGAAATGATATGATATGATTTTGGGAGTTTGGAAGTACTTGAAACTTTAATGAAGTGGCACTTTTTTTTGGTTTTTGTTTTCTACTAAGAGACACGGACACGACACGATACGGCGATACGCCAATTTCTAGAAAACTAGGACACGGACACGTTGAGGATACATTATTATTATTTTCTTCTATATATATATATAACATAAACTACTAAATGTACTCCAAAACATAAAATGTTAAATCAATTGAGATTTGATTATGAATTATCCATATCCAACAAAGTTGCCAAACAAGATATCCAATGACAATGACCAACCAAAACCCAATAAAAGTTACAAACTATTGATCTAGAGTAAAAAAATACAAGAAAGGAAATGATTCAAATGAAAAATAGTTTTCCATACAAAACAAAGTTCTCAAGATGAAGTGGGGACTGGGTGGGCGGCTATCGTGTGAATTGTGAAATCATGGGAATGGGAAAGGCCCGAAAGGGAAATGGAATCCTCGGGCTATAGACTCCCTTGGGCCTTTATCTATTTGGGGGCTGGCCCAAAGGCCAAAATCTTTATTTTCCACTCTTTTTTCTATTTTTTTTTTACGTATCCTGCGTGTCTGGCCGTGTCCCTGCGTGTCTGATATTTAAAAAAAAAAAACAAATTAGACACGCAATTTTGCGTGTCCGACACGTGTCCGGCGCGTGTCCGGACGTATCCGTGTCCGACACGTGTCGGACACTGATTCTTAGCCAACTTAAAAGTGTCCGTGCTTCATTGGTTTTCTAAATGTTATAAAATATGTTTTTGCAGACCCATAAATGGCTTTCTTTATTCTGATTAAATGTTATGGATATGTATCTTTCTTGGCTAGGATCCGACCAACAAAAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGCCCATGGTTGAGCTAGCCGAACTTCCTGCACTGATTAAGTTGCATTTTCCCAAAAACCCCAAGTGAGTTGTGCTTGCAGTTTAACCTCTGACACCTCCCGGATGACTTCTTCAAGTAGCCAATGTCTCGAATGTTTTGCCTCAATTTTGCATGATTGTCCTACCAGGTTTCCTTCACATATATTACCAGAAAATTATTTGACTTTTGCATAGAACATTTATTTAGCAATAGTGTCAGTTTAACTCTCTTCTTTTGCCTCATGCCTTTTGTATATTATATATATATATATATATGGCTTCAC

mRNA sequence

CCCCCATCCCCTTCATCTTCTACAACTTCAACCACACCTCCCATCTTCGCGTGAAACGAGCGCCGCCCATCCCTTTCTTCTCGACTTTCTTCTCTGACATCCTCTCCCTCGTTTTCTTCTTCATCTCGTAGACCCACGACTCCGGCAACGACACACACAAACGCACGCTCTCAACCCAGCAACGACAGAATCGCGATGGCGGCGCAGCAGAGGATCGACGCGAGGTTCGGTAGGCAGAGCAATGCACGGTGACGTCTTCCTCAACGTGTTTGGCTTGAGATTGTTCGAGCATCAACGTTCCCCTTCTTTACGGCTCGCTCGGACGTCGACCTGCCACTTTAGAGGTCGTTTGGTGCTAAATCCACGTTTTCCAGCAAGACCCACTCAGTTTTGAATTTGAGAATCTCTTCTATTCGTGTTTCTCAACTCGTTTTGGTCTAGAATCGATTACCTATTGACTGTGAGAATCTATTCGAACACCTTTGAATAGCAAACAACAAGTGTAATGGCTCTTTCGTTTCAACCCAATTAGATCTCATTCAAACACTCCCAACATGTATTCGAGTCCATTTGGTGAAGTTTGTGGAAGGAGGAAGCAAACTAGTTGTGCAGAAGAATGCTGCCACAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCCAACCTCATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAATTTGTAGGACAGTCCCAAATTTCTCGGTTGGGCTGCTTCAAGTGCGTATGGTCATATATCAAAAGCAACAATCTTCAGGATCCGACCAACAAAAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGCCCATGGTTGAGCTAGCCGAACTTCCTGCACTGATTAAGTTGCATTTTCCCAAAAACCCCAAGTGAGTTGTGCTTGCAGTTTAACCTCTGACACCTCCCGGATGACTTCTTCAAGTAGCCAATGTCTCGAATGTTTTGCCTCAATTTTGCATGATTGTCCTACCAGGTTTCCTTCACATATATTACCAGAAAATTATTTGACTTTTGCATAGAACATTTATTTAGCAATAGTGTCAGTTTAACTCTCTTCTTTTGCCTCATGCCTTTTGTATATTATATATATATATATATATGGCTTCAC

Coding sequence (CDS)

ATGCTGCCACAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCCAACCTCATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAATTTGTAGGACAGTCCCAAATTTCTCGGTTGGGCTGCTTCAAGTGCGTATGGTCATATATCAAAAGCAACAATCTTCAGGATCCGACCAACAAAAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGCCCATGGTTGAGCTAGCCGAACTTCCTGCACTGATTAAGTTGCATTTTCCCAAAAACCCCAAGTGA

Protein sequence

MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK
Homology
[Close]
BLAST of Tan0019966 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.3e-08
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 24  VNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSI 76
           + L   L EF+G  Q+SR    K +W YIK+++LQDP +K  ++CD+KLKS+
Sbjct: 121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSV 172

[Close]
BLAST of Tan0019966 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.4e-07
Identity = 26/77 (33.77%), Postives = 48/77 (62.34%), Query Frame = 0 

Query: 24  VNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVE 83
           V L  +L   +G+ +++R    + +W+YIK++NLQ+P NK  ++CDEKL+ ++LGK    
Sbjct: 124 VTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLE-LILGK-STN 183

Query: 84  LAELPALIKLHFPKNPK 101
           + E+  ++  H  +  K
Sbjct: 184 MFEMHKILASHMTEPKK 198

[Close]
BLAST of Tan0019966 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-06
Identity = 25/77 (32.47%), Postives = 45/77 (58.44%), Query Frame = 0 

Query: 5   RMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKN 64
           + K    D+P   +  +  V L + L++F+G  ++ R    K +W YIK ++LQ+P ++ 
Sbjct: 105 KRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRR 164

Query: 65  VVICDEKLKSILLGKPM 82
            ++CDEK++ I  GK M
Sbjct: 165 EILCDEKMEPI-FGKKM 180

[Close]
BLAST of Tan0019966 vs. NCBI nr
Match: XP_038882021.1 (upstream activation factor subunit spp27 [Benincasa hispida])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDP 60
           MLP+RMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIK+NNLQDP
Sbjct: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGKP VELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]
BLAST of Tan0019966 vs. NCBI nr
Match: TKY46953.1 (Upstream activation factor subunit spp27 [Spatholobus suberectus])

HSP 1 Score: 192.2 bits (487), Expect = 2.2e-45
Identity = 94/100 (94.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 1   MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDP 60
           MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIK+NNLQDP
Sbjct: 179 MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 238

Query: 61  TNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK 101
            NKNVV CDEKLKSILLGKP VELAELPALIKLHFPK PK
Sbjct: 239 NNKNVVNCDEKLKSILLGKPQVELAELPALIKLHFPKEPK 278

[Close]
BLAST of Tan0019966 vs. NCBI nr
Match: XP_027343910.1 (upstream activation factor subunit spp27 [Abrus precatorius])

HSP 1 Score: 192.2 bits (487), Expect = 2.2e-45
Identity = 94/100 (94.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 1   MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDP 60
           MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIK+NNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK 101
            NKNVV CDEKLKSILLGKP VELAELPALIKLHFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKLHFPKEPK 100

[Close]
BLAST of Tan0019966 vs. NCBI nr
Match: XP_008449303.1 (PREDICTED: upstream activation factor subunit spp27 [Cucumis melo] >XP_008449304.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo] >XP_008449305.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 2.2e-45
Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0 

Query: 1   MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDP 60
           M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIK+NNLQDP
Sbjct: 1   MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK 101
           TNKNVV+CDEKLKSILLGKP VELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]
BLAST of Tan0019966 vs. NCBI nr
Match: XP_022928748.1 (upstream activation factor subunit UAF30 [Cucurbita moschata] >XP_022928749.1 upstream activation factor subunit UAF30 [Cucurbita moschata])

HSP 1 Score: 191.0 bits (484), Expect = 4.8e-45
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0 

Query: 1   MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDP 60
           MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIK+NNLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGK  +ELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 100

[Close]
BLAST of Tan0019966 vs. ExPASy TrEMBL
Match: A0A1S3BL41 (upstream activation factor subunit spp27 OS=Cucumis melo OX=3656 GN=LOC103491221 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.0e-45
Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0 

Query: 1   MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDP 60
           M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIK+NNLQDP
Sbjct: 1   MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK 101
           TNKNVV+CDEKLKSILLGKP VELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]
BLAST of Tan0019966 vs. ExPASy TrEMBL
Match: A0A6J1ELR1 (upstream activation factor subunit UAF30 OS=Cucurbita moschata OX=3662 GN=LOC111435564 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.3e-45
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0 

Query: 1   MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDP 60
           MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIK+NNLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGK  +ELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 100

[Close]
BLAST of Tan0019966 vs. ExPASy TrEMBL
Match: A0A6J1HY33 (upstream activation factor subunit UAF30 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.0e-45
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0 

Query: 1   MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDP 60
           MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIK+NNLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK 101
           TNKNVVICDEKL+SILLGK  VELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 100

[Close]
BLAST of Tan0019966 vs. ExPASy TrEMBL
Match: A0A6J1HWJ0 (protein TRI1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.0e-45
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0 

Query: 1   MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDP 60
           MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIK+NNLQDP
Sbjct: 56  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 115

Query: 61  TNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK 101
           TNKNVVICDEKL+SILLGK  VELAELPALIKLHFPKNPK
Sbjct: 116 TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 155

[Close]
BLAST of Tan0019966 vs. ExPASy TrEMBL
Match: A0A151SBL4 (Upstream activation factor subunit UAF30 OS=Cajanus cajan OX=3821 GN=KK1_025905 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.2e-45
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 1   MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDP 60
           MLPQRMK AITDNPKKLANLIDL+NLPSTLREFVGQSQISRLGCFKCVWSYIK+NNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK 101
            NKNVV CDEKLKSILLGKP V+LAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

[Close]
BLAST of Tan0019966 vs. TAIR 10
Match: AT4G26810.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-43
Identity = 85/100 (85.00%), Postives = 89/100 (89.00%), Query Frame = 0 

Query: 1   MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDP 60
           MLPQR+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIK+NNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK 101
            NKNVVICDEKLKSILLGK  VEL +LP+LIKLHFPK  K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]
BLAST of Tan0019966 vs. TAIR 10
Match: AT4G26810.2 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-43
Identity = 85/100 (85.00%), Postives = 89/100 (89.00%), Query Frame = 0 

Query: 1   MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDP 60
           MLPQR+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIK+NNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPMVELAELPALIKLHFPKNPK 101
            NKNVVICDEKLKSILLGK  VEL +LP+LIKLHFPK  K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]
BLAST of Tan0019966 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 7.2e-15
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 0 

Query: 20  LIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGK 79
           ++ +V +   L  F+G++++SR    K +W YIK NNLQ+P NK  ++CDE+LK+I  GK
Sbjct: 30  ILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGK 89

Query: 80  PMVELAELPALIKLHFPKN 99
             V   E+  L+  HFPK+
Sbjct: 90  DTVGFLEISKLLSQHFPKS 108

[Close]
BLAST of Tan0019966 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-12
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 0 

Query: 30  LREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPA 89
           L  F G+ +++R    K VW Y+K +NLQ+P NK  + CD+KLK+I  GK  V + E+  
Sbjct: 43  LASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMK 102

Query: 90  LIKLHFPKN 99
           L+  HFPK+
Sbjct: 103 LLSPHFPKS 111

[Close]
BLAST of Tan0019966 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 6.3e-11
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 0 

Query: 30  LREFVGQSQISRLGCFKCVWSYIKSNNLQDPTNKNVVICDEKLKSILLGKPMVELAELPA 89
           +++ VG  +I R    K +W+YIK ++LQDP NK  ++CDEKLK I  GK  V   E+  
Sbjct: 78  MQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAK 137

Query: 90  LIKLHF 96
           LI  HF
Sbjct: 138 LIGPHF 143

The following BLAST results are available for this feature:
BLAST of Tan0019966 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O745038.3e-0846.15Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97... [more]
Q087475.4e-0733.77Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC... [more]
Q050242.0e-0632.47Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ... [more]
BLAST of Tan0019966 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038882021.11.4e-4797.00upstream activation factor subunit spp27 [Benincasa hispida][more]
TKY46953.12.2e-4594.00Upstream activation factor subunit spp27 [Spatholobus suberectus][more]
XP_027343910.12.2e-4594.00upstream activation factor subunit spp27 [Abrus precatorius][more]
XP_008449303.12.2e-4593.00PREDICTED: upstream activation factor subunit spp27 [Cucumis melo] >XP_008449304... [more]
XP_022928748.14.8e-4594.00upstream activation factor subunit UAF30 [Cucurbita moschata] >XP_022928749.1 up... [more]
BLAST of Tan0019966 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BL411.0e-4593.00upstream activation factor subunit spp27 OS=Cucumis melo OX=3656 GN=LOC103491221... [more]
A0A6J1ELR12.3e-4594.00upstream activation factor subunit UAF30 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1HY334.0e-4594.00upstream activation factor subunit UAF30 isoform X2 OS=Cucurbita maxima OX=3661 ... [more]
A0A6J1HWJ04.0e-4594.00protein TRI1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467287 PE=4 SV=1[more]
A0A151SBL45.2e-4591.00Upstream activation factor subunit UAF30 OS=Cajanus cajan OX=3821 GN=KK1_025905 ... [more]
BLAST of Tan0019966 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G26810.11.6e-4385.00SWIB/MDM2 domain superfamily protein [more]
AT4G26810.21.6e-4385.00SWIB/MDM2 domain superfamily protein [more]
AT2G35605.17.2e-1541.77SWIB/MDM2 domain superfamily protein [more]
AT1G31760.14.4e-1243.48SWIB/MDM2 domain superfamily protein [more]
AT4G34290.16.3e-1145.45SWIB/MDM2 domain superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019835SWIB domainSMARTSM00151swib_2coord: 20..100
e-value: 2.5E-10
score: 50.3
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 24..95
e-value: 4.8E-22
score: 77.6
IPR003121SWIB/MDM2 domainPROSITEPS51925SWIB_MDM2coord: 19..97
score: 18.198137
IPR036885SWIB/MDM2 domain superfamilyGENE3D1.10.245.10SWIB/MDM2 domaincoord: 15..100
e-value: 5.5E-21
score: 76.4
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 13..98
NoneNo IPR availablePANTHERPTHR13844SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY Dcoord: 2..100
NoneNo IPR availablePANTHERPTHR13844:SF45OS09G0133000 PROTEINcoord: 2..100
NoneNo IPR availableCDDcd10567SWIB-MDM2_likecoord: 24..95
e-value: 3.93536E-22
score: 79.8949

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0019966.1Tan0019966.1mRNA
Tan0019966.2Tan0019966.2mRNA
Tan0019966.3Tan0019966.3mRNA
Tan0019966.4Tan0019966.4mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus