Tan0019824 (gene) Snake gourd v1

Overview


Name	Tan0019824
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase
Location	LG08: 36127455 .. 36127778 (+)
RNA-Seq Expression	Tan0019824
Synteny	Tan0019824

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGTGAGTGGTGCCTATCAGAGGCAGAGTCAAAGAGCACCTTGTCAATCTGCCAGATCCACAGTAAGACCACCAACAATACAGGAGTCTGTTGCAAGTGCAAGAAGGAGAACTCCATGTACAAATTGTGGCAAGAGTCATCGAGGCCACTGTCTTGTGGGTGTCGATGTGTGTTACCAGTGTGGGCAGCCAGGGCATTTCAAGAGGGATTGTCCACAGCTGAGAGCAGCCACACAGATGGACCAGGGAGTTGGGTCCCAAACAGTTGAGCAGCCAAGAGTTCCAGTAGCTGCAAGAGAGGGCACCAGTGGTGCTAAATAG

mRNA sequence

ATGCATGTGAGTGGTGCCTATCAGAGGCAGAGTCAAAGAGCACCTTGTCAATCTGCCAGATCCACAGTAAGACCACCAACAATACAGGAGTCTGTTGCAAGTGCAAGAAGGAGAACTCCATGTACAAATTGTGGCAAGAGTCATCGAGGCCACTGTCTTGTGGGTGTCGATGTGTGTTACCAGTGTGGGCAGCCAGGGCATTTCAAGAGGGATTGTCCACAGCTGAGAGCAGCCACACAGATGGACCAGGGAGTTGGGTCCCAAACAGTTGAGCAGCCAAGAGTTCCAGTAGCTGCAAGAGAGGGCACCAGTGGTGCTAAATAG

Coding sequence (CDS)

ATGCATGTGAGTGGTGCCTATCAGAGGCAGAGTCAAAGAGCACCTTGTCAATCTGCCAGATCCACAGTAAGACCACCAACAATACAGGAGTCTGTTGCAAGTGCAAGAAGGAGAACTCCATGTACAAATTGTGGCAAGAGTCATCGAGGCCACTGTCTTGTGGGTGTCGATGTGTGTTACCAGTGTGGGCAGCCAGGGCATTTCAAGAGGGATTGTCCACAGCTGAGAGCAGCCACACAGATGGACCAGGGAGTTGGGTCCCAAACAGTTGAGCAGCCAAGAGTTCCAGTAGCTGCAAGAGAGGGCACCAGTGGTGCTAAATAG

Protein sequence

MHVSGAYQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGAK

Homology

[Close]

BLAST of Tan0019824 vs. ExPASy Swiss-Prot
Match: P24107 (Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A (isolate CAM2) OX=11715 GN=gag-pol PE=3 SV=3)

HSP 1 Score: 49.3 bits (116), Expect = 3.2e-05
Identity = 30/100 (30.00%), Postives = 45/100 (45.00%), Query Frame = 0


Query: 10  QSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDV-----CYQCGQ 69
           Q  R   ++ +  + PP I  + A  RR   C NCGK   GH            C++CG+
Sbjct: 360 QKARLMAEALKEAMGPPPIPFAAAQQRRTIKCWNCGK--EGHSARQCRAPRRQGCWKCGK 419

Query: 70  PGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTS 105
           PGH   +CP  +A    D  +G +  + PR P +    T+
Sbjct: 420 PGHIMTNCPDRQAGFLRDWPLGKEAPQFPRGPSSTGANTN 457

[Close]

BLAST of Tan0019824 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 1.7e-32
Identity = 75/107 (70.09%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 1   MHVSGAYQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCY 60
           M    AYQRQSQRA  Q   S  RP T QESVAS  RRTPC +C KSHRG CLVG  VCY
Sbjct: 396 MSSGSAYQRQSQRASSQFTNSVARPRTGQESVASESRRTPCVSCSKSHRGQCLVGAGVCY 455

Query: 61  QCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGAK 108
           QCGQ GHFKRDCPQLR   Q DQGV S TVEQPR+  AAREGTSGA+
Sbjct: 456 QCGQTGHFKRDCPQLRVGVQRDQGVESHTVEQPRILAAAREGTSGAR 502

[Close]

BLAST of Tan0019824 vs. NCBI nr
Match: KAA0061889.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-31
Identity = 71/101 (70.30%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 7   YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPG 66
           +QRQSQR P Q  RSTVR    QES+AS  RRTPCT+CG++HRG CLVG  VCYQCGQPG
Sbjct: 201 FQRQSQRIPSQPIRSTVRSQPGQESIASTVRRTPCTSCGRNHRGQCLVGAGVCYQCGQPG 260

Query: 67  HFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGAK 108
           HFK+DCPQL    Q DQGVGSQTVEQ RV V   EGTSGA+
Sbjct: 261 HFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEGTSGAR 301

[Close]

BLAST of Tan0019824 vs. NCBI nr
Match: KAA0053322.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-31
Identity = 70/101 (69.31%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 7   YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPG 66
           +QRQSQR PCQ  RSTVR    QES+AS  RR PCT+CG++HRG CLVG  VCYQCGQPG
Sbjct: 292 FQRQSQRIPCQPIRSTVRSQLGQESIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPG 351

Query: 67  HFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGAK 108
           HFK+DCPQL    + DQGVGSQTVEQ RV V   EGTSGA+
Sbjct: 352 HFKKDCPQLNMTVKRDQGVGSQTVEQSRVSVVPTEGTSGAR 392

[Close]

BLAST of Tan0019824 vs. NCBI nr
Match: KAA0060440.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-31
Identity = 71/101 (70.30%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 7   YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPG 66
           +QRQSQR P Q  RSTVR    QES+AS  RRTPCT+CG++HRG CLVG  VCYQCGQPG
Sbjct: 227 FQRQSQRIPSQPIRSTVRSQPGQESIASTVRRTPCTSCGRNHRGQCLVGAGVCYQCGQPG 286

Query: 67  HFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGAK 108
           HFK+DCPQL    Q DQGVGSQTVEQ RV V   EGTSGA+
Sbjct: 287 HFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPIEGTSGAR 327

[Close]

BLAST of Tan0019824 vs. NCBI nr
Match: KAA0042138.1 (uncharacterized protein E6C27_scaffold67G006260 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 3.2e-31
Identity = 71/101 (70.30%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 7   YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPG 66
           +QRQSQR P Q  RSTVR    QES+AS  RRT CTNCG++HRG CLVG DVCYQCGQPG
Sbjct: 292 FQRQSQRVPSQPIRSTVRSQPGQESIASTVRRTSCTNCGRNHRGQCLVGADVCYQCGQPG 351

Query: 67  HFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGAK 108
           HFK+DC QL    Q DQGVGSQTVEQ RV V   EGTSGA+
Sbjct: 352 HFKKDCSQLNMTIQRDQGVGSQTVEQSRVSVVPTEGTSGAR 392

[Close]

BLAST of Tan0019824 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.3e-33
Identity = 75/107 (70.09%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 1   MHVSGAYQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCY 60
           M    AYQRQSQRA  Q   S  RP T QESVAS  RRTPC +C KSHRG CLVG  VCY
Sbjct: 396 MSSGSAYQRQSQRASSQFTNSVARPRTGQESVASESRRTPCVSCSKSHRGQCLVGAGVCY 455

Query: 61  QCGQPGHFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGAK 108
           QCGQ GHFKRDCPQLR   Q DQGV S TVEQPR+  AAREGTSGA+
Sbjct: 456 QCGQTGHFKRDCPQLRVGVQRDQGVESHTVEQPRILAAAREGTSGAR 502

[Close]

BLAST of Tan0019824 vs. ExPASy TrEMBL
Match: A0A5A7UC49 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001470 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.4e-32
Identity = 70/101 (69.31%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 7   YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPG 66
           +QRQSQR PCQ  RSTVR    QES+AS  RR PCT+CG++HRG CLVG  VCYQCGQPG
Sbjct: 292 FQRQSQRIPCQPIRSTVRSQLGQESIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPG 351

Query: 67  HFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGAK 108
           HFK+DCPQL    + DQGVGSQTVEQ RV V   EGTSGA+
Sbjct: 352 HFKKDCPQLNMTVKRDQGVGSQTVEQSRVSVVPTEGTSGAR 392

[Close]

BLAST of Tan0019824 vs. ExPASy TrEMBL
Match: A0A5A7V873 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001390 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.4e-32
Identity = 71/101 (70.30%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 7   YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPG 66
           +QRQSQR P Q  RSTVR    QES+AS  RRTPCT+CG++HRG CLVG  VCYQCGQPG
Sbjct: 201 FQRQSQRIPSQPIRSTVRSQPGQESIASTVRRTPCTSCGRNHRGQCLVGAGVCYQCGQPG 260

Query: 67  HFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGAK 108
           HFK+DCPQL    Q DQGVGSQTVEQ RV V   EGTSGA+
Sbjct: 261 HFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEGTSGAR 301

[Close]

BLAST of Tan0019824 vs. ExPASy TrEMBL
Match: A0A5A7UZA9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002660 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.2e-32
Identity = 71/101 (70.30%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 7   YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPG 66
           +QRQSQR P Q  RSTVR    QES+AS  RRTPCT+CG++HRG CLVG  VCYQCGQPG
Sbjct: 227 FQRQSQRIPSQPIRSTVRSQPGQESIASTVRRTPCTSCGRNHRGQCLVGAGVCYQCGQPG 286

Query: 67  HFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGAK 108
           HFK+DCPQL    Q DQGVGSQTVEQ RV V   EGTSGA+
Sbjct: 287 HFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPIEGTSGAR 327

[Close]

BLAST of Tan0019824 vs. ExPASy TrEMBL
Match: A0A5A7TH36 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006260 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31
Identity = 71/101 (70.30%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 7   YQRQSQRAPCQSARSTVRPPTIQESVASARRRTPCTNCGKSHRGHCLVGVDVCYQCGQPG 66
           +QRQSQR P Q  RSTVR    QES+AS  RRT CTNCG++HRG CLVG DVCYQCGQPG
Sbjct: 292 FQRQSQRVPSQPIRSTVRSQPGQESIASTVRRTSCTNCGRNHRGQCLVGADVCYQCGQPG 351

Query: 67  HFKRDCPQLRAATQMDQGVGSQTVEQPRVPVAAREGTSGAK 108
           HFK+DC QL    Q DQGVGSQTVEQ RV V   EGTSGA+
Sbjct: 352 HFKKDCSQLNMTIQRDQGVGSQTVEQSRVSVVPTEGTSGAR 392

The following BLAST results are available for this feature:

BLAST of Tan0019824 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P24107	3.2e-05	30.00	Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A (isolate CA...	[more]

BLAST of Tan0019824 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051980.1	1.7e-32	70.09	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D...	[more]
KAA0061889.1	1.1e-31	70.30	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0053322.1	1.1e-31	69.31	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
KAA0060440.1	1.9e-31	70.30	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042138.1	3.2e-31	70.30	uncharacterized protein E6C27_scaffold67G006260 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0019824 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9X4	8.3e-33	70.09	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UC49	5.4e-32	69.31	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10...	[more]
A0A5A7V873	5.4e-32	70.30	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UZA9	9.2e-32	70.30	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TH36	1.6e-31	70.30	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of Tan0019824 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 58..74 e-value: 4.3E-6 score: 36.2
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 58..74 e-value: 9.8E-9 score: 34.9
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 59..74 score: 11.564723
None	No IPR available	GENE3D	4.10.60.10		coord: 56..99 e-value: 6.0E-9 score: 38.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 45..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0019824.1	Tan0019824.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0008270	zinc ion binding