Tan0019821 (gene) Snake gourd v1

Overview


Name	Tan0019821
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	photosynthetic NDH subunit of subcomplex B 3, chloroplastic
Location	LG06: 2168231 .. 2169843 (+)
RNA-Seq Expression	Tan0019821
Synteny	Tan0019821

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAACCTTACCCATAACGACTGACGGCGACAACAGATAAGGCCATGAAGAAAAGAATCACACACACACAATTATGATCCATTTTTCACTCAACACTTCATTTCTTCAACCCCCAATTTCCCAAAATGGAGGCTCTCCATCTGGGTTTATATCGTTTATCATCTTCATCATCCTTTCGCTCCTTCAACTACATTACAAATTCAACCCACACCCTTAAACGAATTCGGCCTCTAAGTTTTCGCAGAGGCAAAATCAGAGCTGTTGGCACTGTTCCACAGAGCCAATCCGAAACCAGTGAGCCTGAGGAGCCTCCGATTGTTGATCTTGCTTTCGTTAATGTAAGTTTTGGCGCCAATTTTTTTGTTTAAAGTGGATTTTCAAGTCTTATTGTTTGTTTTTTGTAGTCTGTGTTGCTTCCTGATGGAACTCCTGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGCTTGATTCCAATATTGAATTGTATGGGCCTTATGTGAGTTTCTCAGTTCCTTCACTTCACGAATTGGGTTTCAAATAGTTTAGATTCTAATATGGATTTGATGTTCTTTTACAGTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGAACCTGTGGAACTTGTATGGTGGAGGTGATTTTCCTGCATTACATCATGTTCTTAAAGAGGATTTAATCAATACCCTTTTCATTTCTACTTTCTGAATCATTGTTCTTGTGATCATTATGGTAAAATTATTCAGTTAATGACTTCATCAGACAGATATAGAAGTTTAGAGAGCTAAAAAAATTTGATGCTTTGGCCATTGATAAATGAAAGAGATGAAGAAGAGATTCAATCTTAATCCTCTGAATGAAATGTTAACCATTTCAGATCATTGAAGGGAAAGAGCTACTGAACCCTCGCACAGACATAGAGAAGGACAAACTTAAAAAGGTAAGTATACATATGCCATTGGCATTGAGCTGAGAAATCAAGATGAGTCAATGACTGTGGACTCTGTCTTGTGGATGTTAAGTTCATTGTACCTTTATCACTCACACAGAGGATTCCTGACTTTTTTCATTTAGTTTCAATTCCTCTGAACATCACTTTATAGCTGAATCCAACAACAACAGCTTAATGATCTTGTTTTCATATACAGAAACCCAAAAACTGGAGACTGGCTTGCCAAACCACAGTTGGGAAACCAGATTCCAGAGGGATGGTAAATTAGTAGAAGTTTGTTTGATACTGTTGTTGAATAGAATAGTCTTCTCTTTTCACAAAAGTTGATGAGATTATTGTTTGTTTTCTTTGTATGCAGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGTTATGAAAAAGTAGAGCTTTCAGAGTCATCTGAGTCTTCAGAATCTGCATGACTTAACCATTTTTTGACCCATCAGAGAAGAGTCAGCTGAGAAGATTGAGCTATGGACATTAACTCATCCACTTTAGAGCATACAAAGATAAGCTCCTTTCCCCAGTTTCAACATTGTAATTATTCTTTGTTTATATCATACAGTTTGTTCCTTTTTTGGGCAATCAATGCAATGGTTAAATGTTGCGTTC

mRNA sequence

GTAAAACCTTACCCATAACGACTGACGGCGACAACAGATAAGGCCATGAAGAAAAGAATCACACACACACAATTATGATCCATTTTTCACTCAACACTTCATTTCTTCAACCCCCAATTTCCCAAAATGGAGGCTCTCCATCTGGGTTTATATCGTTTATCATCTTCATCATCCTTTCGCTCCTTCAACTACATTACAAATTCAACCCACACCCTTAAACGAATTCGGCCTCTAAGTTTTCGCAGAGGCAAAATCAGAGCTGTTGGCACTGTTCCACAGAGCCAATCCGAAACCAGTGAGCCTGAGGAGCCTCCGATTGTTGATCTTGCTTTCGTTAATTCTGTGTTGCTTCCTGATGGAACTCCTGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGCTTGATTCCAATATTGAATTGTATGGGCCTTATTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGAACCTGTGGAACTTGTATGGTGGAGATCATTGAAGGGAAAGAGCTACTGAACCCTCGCACAGACATAGAGAAGGACAAACTTAAAAAGAAACCCAAAAACTGGAGACTGGCTTGCCAAACCACAGTTGGGAAACCAGATTCCAGAGGGATGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGTTATGAAAAAGTAGAGCTTTCAGAGTCATCTGAGTCTTCAGAATCTGCATGACTTAACCATTTTTTGACCCATCAGAGAAGAGTCAGCTGAGAAGATTGAGCTATGGACATTAACTCATCCACTTTAGAGCATACAAAGATAAGCTCCTTTCCCCAGTTTCAACATTGTAATTATTCTTTGTTTATATCATACAGTTTGTTCCTTTTTTGGGCAATCAATGCAATGGTTAAATGTTGCGTTC

Coding sequence (CDS)

ATGGAGGCTCTCCATCTGGGTTTATATCGTTTATCATCTTCATCATCCTTTCGCTCCTTCAACTACATTACAAATTCAACCCACACCCTTAAACGAATTCGGCCTCTAAGTTTTCGCAGAGGCAAAATCAGAGCTGTTGGCACTGTTCCACAGAGCCAATCCGAAACCAGTGAGCCTGAGGAGCCTCCGATTGTTGATCTTGCTTTCGTTAATTCTGTGTTGCTTCCTGATGGAACTCCTGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGCTTGATTCCAATATTGAATTGTATGGGCCTTATTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGAACCTGTGGAACTTGTATGGTGGAGATCATTGAAGGGAAAGAGCTACTGAACCCTCGCACAGACATAGAGAAGGACAAACTTAAAAAGAAACCCAAAAACTGGAGACTGGCTTGCCAAACCACAGTTGGGAAACCAGATTCCAGAGGGATGCTTGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGTTATGAAAAAGTAGAGCTTTCAGAGTCATCTGAGTCTTCAGAATCTGCATGA

Protein sequence

MEALHLGLYRLSSSSSFRSFNYITNSTHTLKRIRPLSFRRGKIRAVGTVPQSQSETSEPEEPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIIEGKELLNPRTDIEKDKLKKKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKAHEWGYEKVELSESSESSESA

Homology

[Close]

BLAST of Tan0019821 vs. ExPASy Swiss-Prot
Match: Q9LU21 (Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB3 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.4e-62
Identity = 121/192 (63.02%), Postives = 141/192 (73.44%), Query Frame = 0


Query: 6   LGLYRLSSSSSFRSFNYITNSTHTLKRIRPLSF---------RRGKIRAVGTVPQSQSET 65
           +G  +LS S    S     + +H  K  +P S+         R   +RA+ T P SQ   
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 66  S-EPEEPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNC 125
           + EP+EPP VD AFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSNIELYGPYS+ L NC
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPYSKPLSNC 120

Query: 126 AGGGTCGTCMVEIIEGKELLNPRTDIEKDKLKKKPKNWRLACQTTVGKPDSRGMLVVQQL 185
           AG GTC TCMVEI+ GKELLNPRTDIEK+KLK+KPKNWRLACQT VG PDS G++V+QQL
Sbjct: 121 AGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQL 180

Query: 186 PEWKAHEWGYEK 188
           PEWKAHEW   K
Sbjct: 181 PEWKAHEWNIPK 192

[Close]

BLAST of Tan0019821 vs. NCBI nr
Match: XP_022145222.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia])

HSP 1 Score: 391.0 bits (1003), Expect = 6.3e-105
Identity = 189/200 (94.50%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 1   MEALHLGLYRLSSSSSFRSFNYITNSTHTLKRIRPLSFRRGKIRAVGTVPQSQSETSEPE 60
           MEA HLG YRLSSSSS RSFNYITNSTHTLKR+RPL+FRR KIRAVGTVPQSQSET++PE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIIEGKELLNPRTDIEKDKLKKKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEI+EGKELLNPRTDIEKDKLK+KPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESSESA 201
           HEWGYEKVELSESSESSESA
Sbjct: 181 HEWGYEKVELSESSESSESA 200

[Close]

BLAST of Tan0019821 vs. NCBI nr
Match: XP_038899995.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 376.7 bits (966), Expect = 1.2e-100
Identity = 181/197 (91.88%), Postives = 190/197 (96.45%), Query Frame = 0


Query: 1   MEALHLGLYRLSSSSSFRSFNYITNSTHTLKRIRPLSFRRGKIRAVGTVPQSQSETSEPE 60
           MEALHLG YRLSSSSSFRSFNYIT+S+ TLKR RPLSFRR  IRAVGTVPQ+QSET++PE
Sbjct: 1   MEALHLGSYRLSSSSSFRSFNYITSSSQTLKRFRPLSFRRAHIRAVGTVPQNQSETTDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPP+VD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPVVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIIEGKELLNPRTDIEKDKLKKKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIIEGKELLN RTDIEKDKLK+KPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIIEGKELLNSRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 198
           HEWGYEKVE+SESSES+
Sbjct: 181 HEWGYEKVEISESSESA 197

[Close]

BLAST of Tan0019821 vs. NCBI nr
Match: XP_004141758.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >KGN45396.1 hypothetical protein Csa_016364 [Cucumis sativus])

HSP 1 Score: 374.4 bits (960), Expect = 6.1e-100
Identity = 178/197 (90.36%), Postives = 190/197 (96.45%), Query Frame = 0


Query: 1   MEALHLGLYRLSSSSSFRSFNYITNSTHTLKRIRPLSFRRGKIRAVGTVPQSQSETSEPE 60
           MEALHLG Y L SSSSFRSFNYITNS+HTLKR RPL+FRR ++RAVGTVPQSQSE ++PE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIIEGKELLNPRTDIEKDKLKKKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEI+EGKELLNPRTDIEKDKLK+KPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 198
           HEWGYE+VELS+SSES+
Sbjct: 181 HEWGYEEVELSDSSEST 197

[Close]

BLAST of Tan0019821 vs. NCBI nr
Match: XP_022964207.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita moschata] >XP_023000397.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita maxima] >XP_023514199.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372.9 bits (956), Expect = 1.8e-99
Identity = 181/200 (90.50%), Postives = 188/200 (94.00%), Query Frame = 0


Query: 1   MEALHLGLYRLSSSSSFRSFNYITNSTHTLKRIRPLSFRRGKIRAVGTVPQSQSETSEPE 60
           MEALHLG      SSSFRSFNYITNSTHTL R RPL+FRR KIRAVGTVPQSQS+TSEP+
Sbjct: 1   MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQ 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPP+VD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSN+ELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIIEGKELLNPRTDIEKDKLKKKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEI+EGKELLNPRTDIEKDKLKKKPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESSESA 201
           HEWGYEKVELSESSESSESA
Sbjct: 181 HEWGYEKVELSESSESSESA 194

[Close]

BLAST of Tan0019821 vs. NCBI nr
Match: KAA0059320.1 (photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK04007.1 photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa])

HSP 1 Score: 370.9 bits (951), Expect = 6.8e-99
Identity = 177/197 (89.85%), Postives = 188/197 (95.43%), Query Frame = 0


Query: 1   MEALHLGLYRLSSSSSFRSFNYITNSTHTLKRIRPLSFRRGKIRAVGTVPQSQSETSEPE 60
           ME LHLG Y LSSSSSFRSFNYITNS+HTLKR R L+FRR ++RAVGTVPQSQSE  +PE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIIEGKELLNPRTDIEKDKLKKKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEI+EGKELLNPRTDIEKDKLK+KPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 198
           HEWGYE+V+LSE SES+
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]

BLAST of Tan0019821 vs. ExPASy TrEMBL
Match: A0A6J1CVZ7 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014722 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 3.1e-105
Identity = 189/200 (94.50%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 1   MEALHLGLYRLSSSSSFRSFNYITNSTHTLKRIRPLSFRRGKIRAVGTVPQSQSETSEPE 60
           MEA HLG YRLSSSSS RSFNYITNSTHTLKR+RPL+FRR KIRAVGTVPQSQSET++PE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIIEGKELLNPRTDIEKDKLKKKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEI+EGKELLNPRTDIEKDKLK+KPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESSESA 201
           HEWGYEKVELSESSESSESA
Sbjct: 181 HEWGYEKVELSESSESSESA 200

[Close]

BLAST of Tan0019821 vs. ExPASy TrEMBL
Match: A0A0A0KC78 (2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447110 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.0e-100
Identity = 178/197 (90.36%), Postives = 190/197 (96.45%), Query Frame = 0


Query: 1   MEALHLGLYRLSSSSSFRSFNYITNSTHTLKRIRPLSFRRGKIRAVGTVPQSQSETSEPE 60
           MEALHLG Y L SSSSFRSFNYITNS+HTLKR RPL+FRR ++RAVGTVPQSQSE ++PE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIIEGKELLNPRTDIEKDKLKKKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEI+EGKELLNPRTDIEKDKLK+KPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 198
           HEWGYE+VELS+SSES+
Sbjct: 181 HEWGYEEVELSDSSEST 197

[Close]

BLAST of Tan0019821 vs. ExPASy TrEMBL
Match: A0A6J1KDJ1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494655 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 8.6e-100
Identity = 181/200 (90.50%), Postives = 188/200 (94.00%), Query Frame = 0


Query: 1   MEALHLGLYRLSSSSSFRSFNYITNSTHTLKRIRPLSFRRGKIRAVGTVPQSQSETSEPE 60
           MEALHLG      SSSFRSFNYITNSTHTL R RPL+FRR KIRAVGTVPQSQS+TSEP+
Sbjct: 1   MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQ 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPP+VD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSN+ELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIIEGKELLNPRTDIEKDKLKKKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEI+EGKELLNPRTDIEKDKLKKKPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESSESA 201
           HEWGYEKVELSESSESSESA
Sbjct: 181 HEWGYEKVELSESSESSESA 194

[Close]

BLAST of Tan0019821 vs. ExPASy TrEMBL
Match: A0A6J1HH80 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464295 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 8.6e-100
Identity = 181/200 (90.50%), Postives = 188/200 (94.00%), Query Frame = 0


Query: 1   MEALHLGLYRLSSSSSFRSFNYITNSTHTLKRIRPLSFRRGKIRAVGTVPQSQSETSEPE 60
           MEALHLG      SSSFRSFNYITNSTHTL R RPL+FRR KIRAVGTVPQSQS+TSEP+
Sbjct: 1   MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQ 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPP+VD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSN+ELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIIEGKELLNPRTDIEKDKLKKKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEI+EGKELLNPRTDIEKDKLKKKPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESSESA 201
           HEWGYEKVELSESSESSESA
Sbjct: 181 HEWGYEKVELSESSESSESA 194

[Close]

BLAST of Tan0019821 vs. ExPASy TrEMBL
Match: A0A5A7UW39 (Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002050 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.3e-99
Identity = 177/197 (89.85%), Postives = 188/197 (95.43%), Query Frame = 0


Query: 1   MEALHLGLYRLSSSSSFRSFNYITNSTHTLKRIRPLSFRRGKIRAVGTVPQSQSETSEPE 60
           ME LHLG Y LSSSSSFRSFNYITNS+HTLKR R L+FRR ++RAVGTVPQSQSE  +PE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIIEGKELLNPRTDIEKDKLKKKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEI+EGKELLNPRTDIEKDKLK+KPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 198
           HEWGYE+V+LSE SES+
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]

BLAST of Tan0019821 vs. TAIR 10
Match: AT3G16250.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 240.7 bits (613), Expect = 9.8e-64
Identity = 121/192 (63.02%), Postives = 141/192 (73.44%), Query Frame = 0


Query: 6   LGLYRLSSSSSFRSFNYITNSTHTLKRIRPLSF---------RRGKIRAVGTVPQSQSET 65
           +G  +LS S    S     + +H  K  +P S+         R   +RA+ T P SQ   
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 66  S-EPEEPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNC 125
           + EP+EPP VD AFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSNIELYGPYS+ L NC
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPYSKPLSNC 120

Query: 126 AGGGTCGTCMVEIIEGKELLNPRTDIEKDKLKKKPKNWRLACQTTVGKPDSRGMLVVQQL 185
           AG GTC TCMVEI+ GKELLNPRTDIEK+KLK+KPKNWRLACQT VG PDS G++V+QQL
Sbjct: 121 AGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQL 180

Query: 186 PEWKAHEWGYEK 188
           PEWKAHEW   K
Sbjct: 181 PEWKAHEWNIPK 192

[Close]

BLAST of Tan0019821 vs. TAIR 10
Match: AT4G32590.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-30
Identity = 65/146 (44.52%), Postives = 94/146 (64.38%), Query Frame = 0


Query: 40  RGKIRAVGTVPQSQSETSEPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           R ++ +  +   S S+ S P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIIEGKELLNPRTDIEKDKLKKKPKNW 159
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LKKKP++W
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESW 147

Query: 160 RLACQTTVGKPDSRGMLVVQQLPEWK 180
           RLACQT VG  ++ G +VVQ++P+WK
Sbjct: 148 RLACQTIVGNKENSGKVVVQRIPQWK 172

[Close]

BLAST of Tan0019821 vs. TAIR 10
Match: AT4G32590.3 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-25
Identity = 59/135 (43.70%), Postives = 84/135 (62.22%), Query Frame = 0


Query: 40  RGKIRAVGTVPQSQSETSEPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           R ++ +  +   S S+ S P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIIEGKELLNPRTDIEKDKLKKKPKNW 159
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LKKKP++W
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESW 147

Query: 160 RLACQTTVGKPDSRG 169
           RLACQT VG  ++ G
Sbjct: 148 RLACQTIVGNKENSG 161

[Close]

BLAST of Tan0019821 vs. TAIR 10
Match: AT4G32590.4 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 5.3e-17
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 40  RGKIRAVGTVPQSQSETSEPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           R ++ +  +   S S+ S P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVEIIEGKELLNPRTDIEKDKLKK 149
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LKK
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKK 141

[Close]

BLAST of Tan0019821 vs. TAIR 10
Match: AT4G32590.2 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-10
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 40  RGKIRAVGTVPQSQSETSEPE-----EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQK-L 99
           R ++ +  +   S S+ S P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIELYGPYSRFLLNCAGGGTCGTCMVE 128
           R+IM D+ IELY  Y + ++NC GGG+CGTC+VE
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVE 120

The following BLAST results are available for this feature:

BLAST of Tan0019821 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LU21	1.4e-62	63.02	Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Tan0019821 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145222.1	6.3e-105	94.50	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia...	[more]
XP_038899995.1	1.2e-100	91.88	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida]	[more]
XP_004141758.1	6.1e-100	90.36	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >K...	[more]
XP_022964207.1	1.8e-99	90.50	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita moschata]...	[more]
KAA0059320.1	6.8e-99	89.85	photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK0400...	[more]

BLAST of Tan0019821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVZ7	3.1e-105	94.50	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charant...	[more]
A0A0A0KC78	3.0e-100	90.36	2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A6J1KDJ1	8.6e-100	90.50	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima ...	[more]
A0A6J1HH80	8.6e-100	90.50	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita moschat...	[more]
A0A5A7UW39	3.3e-99	89.85	Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of Tan0019821 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16250.1	9.8e-64	63.02	NDH-dependent cyclic electron flow 1	[more]
AT4G32590.1	3.2e-30	44.52	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.3	1.8e-25	43.70	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.4	5.3e-17	40.87	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.2	6.3e-10	37.23	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 113..161 e-value: 3.6E-10 score: 39.7
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 90..161 e-value: 1.77977E-6 score: 42.382
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 73..181 e-value: 9.3E-19 score: 69.1
None	No IPR available	PANTHER	PTHR23426:SF27	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 3, CHLOROPLASTIC	coord: 1..188
None	No IPR available	PANTHER	PTHR23426	FERREDOXIN/ADRENODOXIN	coord: 1..188
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 83..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0019821.1	Tan0019821.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
molecular_function	GO:0051536	iron-sulfur cluster binding