Tan0019782 (gene) Snake gourd v1

Overview
NameTan0019782
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCox19-like CHCH family protein
LocationLG07: 66904490 .. 66905828 (-)
RNA-Seq ExpressionTan0019782
SyntenyTan0019782
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCAGCGCGTGGGATTGCACGTGAGAACCCATTCCCTAAAATTTTCAAGCACGAATCTGGAATTTGCGGATACCTCTTTTTCCTAGCCGCAGCTTTAAGTTCTTTTTTTTTTTCCCCTCTCGAAATGCGCCTTTTCTTCAGTTTCGTCCCATTGTTTTGCGATTCCTTGATAAACAAGCTGCAGCTCACTGGTTTTCAAATCCACTGACAGTTCCGCCATGGATGAACCTCAGCCTCAGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTCAATTGCGTTACGGAGTCTCCGTTCGATCAAGAGAAATGCTATCGTCTCCTTCATTCTTTGCGAGAATGCGTGCTTAGCAAGGTATTCGTTTGCTCTGTTCAATTTGCCCTAAGCTTTCGTATTTGTTTCGATGTTTGATGAGACTCAATTGATGCTGTTTTCGGATTTTTTGAATTAGATCGCCTTGCATTCTGATTTGGATTTGCTGAGTAATTGTTGAATTTTTATGCCATCGCTCTCATCGGAGTTCGATTGTTATTCTCCGAATAGTGATTCAGTTATTATAATTTCTAGGTTTAATTTAGGATTCGTGAAATCGAGGATTATGCTTGAAATGATTATCAAATGATTTCACAATTTAGCATATGGAAAAAGACGCGAGTAAATTTTACCTTACTTCCCACTGCAACGCTGATTTATTCAAACGTGTGGGATCTTGATTTGAATTTTTGTTCTGATTGGCTTGAACTTTTAGTTCCATTTTGGCAACATTTCAGGCACATCGATTCACTATTCTAAATCCTTTACACTTGCCTTCACATTTCACATGCACATTATTAGTATAAGCAACAAAATGTAGAAAAGTTTTCTGTTCTAATGTTCTTTTTCTCTTCGTATTTTTCCTTTTCCTTGAATTTGTTCCTTCTTCATTCTACAGAAAGTGAAGAAGTTCTCTCTGGCTGATAAAGAACAAGCAAAACCAAGTAAGAAGAGCTCTTGAATGAAGCAATTTTGCAAAGTATGATAGATTCTGGTGTTATGTAATTGAAGTTTTCATATCTAGAAGATATCCTCTCTCTCTCCATTCAATGCTGAAAAACGGTTAACCACATTATAGCGGTTCTCTTTTAGATTGTACTGGTTGAACTAGAGAATCCATGTGCCCTTCAATGATTTGGAATTGAATTCTATCAAAATGGCCATTGAATTCCTTCATGGAGTTAGTTCGAAACAAGCCCTATAAATAATGTTGAAGTCTGAAGGATTGTTTAAGTATTTTTCAAGTTAGCTATTTTCCCAATCCTTGAAGTTTCTAGCAAATCTCTGTTGTTAGTGAGCAATACTGA

mRNA sequence

CCCAGCGCGTGGGATTGCACGTGAGAACCCATTCCCTAAAATTTTCAAGCACGAATCTGGAATTTGCGGATACCTCTTTTTCCTAGCCGCAGCTTTAAGTTCTTTTTTTTTTTCCCCTCTCGAAATGCGCCTTTTCTTCAGTTTCGTCCCATTGTTTTGCGATTCCTTGATAAACAAGCTGCAGCTCACTGGTTTTCAAATCCACTGACAGTTCCGCCATGGATGAACCTCAGCCTCAGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTCAATTGCGTTACGGAGTCTCCGTTCGATCAAGAGAAATGCTATCGTCTCCTTCATTCTTTGCGAGAATGCGTGCTTAGCAAGAAAGTGAAGAAGTTCTCTCTGGCTGATAAAGAACAAGCAAAACCAAGTAAGAAGAGCTCTTGAATGAAGCAATTTTGCAAAGTATGATAGATTCTGGTGTTATGTAATTGAAGTTTTCATATCTAGAAGATATCCTCTCTCTCTCCATTCAATGCTGAAAAACGGTTAACCACATTATAGCGGTTCTCTTTTAGATTGTACTGGTTGAACTAGAGAATCCATGTGCCCTTCAATGATTTGGAATTGAATTCTATCAAAATGGCCATTGAATTCCTTCATGGAGTTAGTTCGAAACAAGCCCTATAAATAATGTTGAAGTCTGAAGGATTGTTTAAGTATTTTTCAAGTTAGCTATTTTCCCAATCCTTGAAGTTTCTAGCAAATCTCTGTTGTTAGTGAGCAATACTGA

Coding sequence (CDS)

ATGGATGAACCTCAGCCTCAGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTCAATTGCGTTACGGAGTCTCCGTTCGATCAAGAGAAATGCTATCGTCTCCTTCATTCTTTGCGAGAATGCGTGCTTAGCAAGAAAGTGAAGAAGTTCTCTCTGGCTGATAAAGAACAAGCAAAACCAAGTAAGAAGAGCTCTTGA

Protein sequence

MDEPQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADKEQAKPSKKSS
Homology
BLAST of Tan0019782 vs. NCBI nr
Match: KGN50036.1 (hypothetical protein Csa_000619 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADKEQAKP 60
          MDEPQPQPVCAQEAL+LLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLA++EQ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SKKSS 66
            K +
Sbjct: 61 IIKKN 65

BLAST of Tan0019782 vs. NCBI nr
Match: KAA0042698.1 (Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like CHCH family protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-22
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADKEQAKP 60
          MDEPQPQPVCAQEAL+LLNCVTESPFDQ+KCYRLLHSLRECVLSKKVKKFSLA++EQ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SKKSS 66
            K +
Sbjct: 61 IVKKN 65

BLAST of Tan0019782 vs. NCBI nr
Match: KAG6606053.1 (hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.3 bits (277), Expect = 3.1e-21
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADKEQAKP 60
          MD+ Q QPVCAQEALDLLNCVT+SPFDQEKCYRLLHSLRECVLSKKVKKFSLAD+E+AK 
Sbjct: 1  MDDAQAQPVCAQEALDLLNCVTDSPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKR 60

Query: 61 SKKSS 66
          S K S
Sbjct: 61 SGKKS 65

BLAST of Tan0019782 vs. NCBI nr
Match: KAG7017003.1 (hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.6 bits (244), Expect = 2.1e-17
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADKEQAKP 60
          M EP+ QPVCAQEALDLLNCVTESPFDQ+KCYRLLHSLRECV+S   KKFSLAD+EQ K 
Sbjct: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQTKQ 72

Query: 61 SKKS 65
           K +
Sbjct: 73 MKNA 73

BLAST of Tan0019782 vs. NCBI nr
Match: KAF5734209.1 (hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii])

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 46/56 (82.14%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADKE 57
          MDE + +PVCAQEALDLLNCVT+SPFDQEKC +LL+SLRECVL+KKVKKFSLAD+E
Sbjct: 1  MDEARARPVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNKKVKKFSLADQE 56

BLAST of Tan0019782 vs. ExPASy TrEMBL
Match: A0A0A0KQS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.2e-23
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADKEQAKP 60
          MDEPQPQPVCAQEAL+LLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLA++EQ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SKKSS 66
            K +
Sbjct: 61 IIKKN 65

BLAST of Tan0019782 vs. ExPASy TrEMBL
Match: A0A5D3C4E2 (Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002030 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADKEQAKP 60
          MDEPQPQPVCAQEAL+LLNCVTESPFDQ+KCYRLLHSLRECVLSKKVKKFSLA++EQ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SKKSS 66
            K +
Sbjct: 61 IVKKN 65

BLAST of Tan0019782 vs. ExPASy TrEMBL
Match: A0A7J7CJI7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-17
Identity = 46/56 (82.14%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADKE 57
          MDE + +PVCAQEALDLLNCVT+SPFDQEKC +LL+SLRECVL+KKVKKFSLAD+E
Sbjct: 1  MDEARARPVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNKKVKKFSLADQE 56

BLAST of Tan0019782 vs. ExPASy TrEMBL
Match: A0A803PNU7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.3e-16
Identity = 46/59 (77.97%), Postives = 55/59 (93.22%), Query Frame = 0

Query: 7  QPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADKEQAKPSKKSS 66
          QPVCAQEALDLLNCVT+SP+DQ+KC RLL+SLR+CVL+KKVKKFS+AD+E AKPS K +
Sbjct: 12 QPVCAQEALDLLNCVTQSPYDQDKCIRLLNSLRDCVLTKKVKKFSIADQE-AKPSDKKT 69

BLAST of Tan0019782 vs. ExPASy TrEMBL
Match: A0A7J6E8K7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_017982 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.3e-16
Identity = 46/59 (77.97%), Postives = 55/59 (93.22%), Query Frame = 0

Query: 7   QPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADKEQAKPSKKSS 66
           QPVCAQEALDLLNCVT+SP+DQ+KC RLL+SLR+CVL+KKVKKFS+AD+E AKPS K +
Sbjct: 71  QPVCAQEALDLLNCVTQSPYDQDKCIRLLNSLRDCVLTKKVKKFSIADQE-AKPSDKKT 128

BLAST of Tan0019782 vs. TAIR 10
Match: AT4G23760.1 (Cox19-like CHCH family protein )

HSP 1 Score: 84.0 bits (206), Expect = 5.0e-17
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MDEPQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADKE 57
           M++   QP+C QEAL LLNCV ESPFDQEKC R L SLRECVLSKKVKKFS+  ++
Sbjct: 47  MEKQSTQPICGQEALQLLNCVAESPFDQEKCVRFLQSLRECVLSKKVKKFSIPSQD 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN50036.11.3e-2287.69hypothetical protein Csa_000619 [Cucumis sativus][more]
KAA0042698.12.2e-2286.15Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like... [more]
KAG6606053.13.1e-2186.15hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7017003.12.1e-1778.13hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAF5734209.11.0e-1682.14hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii][more]
Match NameE-valueIdentityDescription
A0A0A0KQS76.2e-2387.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1[more]
A0A5D3C4E21.1e-2286.15Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A7J7CJI75.1e-1782.14Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 ... [more]
A0A803PNU77.3e-1677.97Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J6E8K77.3e-1677.97Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_017982 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G23760.15.0e-1769.64Cox19-like CHCH family protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.1130CytochromE C oxidase copper chaperonecoord: 5..65
e-value: 4.3E-6
score: 28.6
NoneNo IPR availablePANTHERPTHR37750COX19-LIKE CHCH FAMILY PROTEINcoord: 1..62
NoneNo IPR availablePROSITEPS51808CHCHcoord: 7..49
score: 11.009933
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 7..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0019782.1Tan0019782.1mRNA