Tan0019776 (gene) Snake gourd v1

Overview
NameTan0019776
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCR4-NOT transcription complex subunit like
LocationLG06: 3959097 .. 3961549 (+)
RNA-Seq ExpressionTan0019776
SyntenyTan0019776
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTGAACTCTCTCCTCTTTGTAATAAGACTGAAGGTGAATGAATGGCTTCCATCTTCGCCGCGCCGCCGTCTCAACTGAATCTCTCTTCTCGCCGACCAAGTTTGATCCACAGAGTCGTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCCGAACTGCTTTCCGATTCCTTCTTCCAGGTATCCGTCATTTAATCACTCCTCTTCGATCCCTCGCATTCGACTTATATAGTCTCGGAAGATATCAGGATTGTTATATGTTGTCATGAGACTAGGGAGCATTTTAGTAATGAAGTTCATCTGCTAGTTAGTTCTGTAAAGTGGATCGACTTTGATTCTTTTGTTGAAAACGGAATCTGGCTGGCAGTTGCTATTTCCGAATTGGTCTTAGCTACTAACGCAAAGAGCTTACACTAGTATTAGGTTTTGTTGTTCTGAATTTTTATATAAGTTTGCGTGTAATTTACCTTTGATTGGATGCCTATTTTACCTGTCCTCTACGATCCCTCGCATTAGGCATATATTATCTCAGAAGATATCGGAATTTTGTTACATGTTGCAATGAGCATTTTAGCATTGAAGATAATTTGTTATTTAGCTCTGTAAAGTGAATCCACTTTGCTTCTTGTGTTGAAAATGGAATTGGACGATAGTTGCTGCCTTGCTGGTTCCTAATTGGTTTCGGCTACTTTCGCAAATAGCTTATAATGGTATTAAGTTTTACTTTTCTGGATGTTTTGAAGTTTAAATTTAATGCACCTTTGATTTGATACCTATTTAAGCAGTCCTCTTCATCCCTTGCATTTGGCTTTGACATATAGAGCCTCAGCGAATACCGGGATTATTATGTGGTGTTATGAGCATGCTAGCATCATAGTTCATCTACAACTTAGTTATGTGAAGTGAATCCACTTTGTTTGTTGTGTTGAAAATGGAATTTGAAGGGTAGTTAATCACTGAATCTTGATTGGTTTTTGGCTAAGCTACTAACGCTAGGAGCTTCTACTACTAGTATTAGGATTTATTTTTCTGATCTTCTTCGAAGTCTAAATAGGATGAATCTTTGGTTTGTTACTTATTTGGGGATTAAATGAGCATGTATAGAATTTTGTCCATTACTTTTTGGTTCCCGACTTGGGGAAACCTTATTAGTTCTTTCGGAAAGCTCTTCTCTGATAAAGAAGTAGATATATTTAACATTTTCGGGAGATTATAATTCTGAAATGACCTTATATAATTTCTTTAAAAAGAAATTTAGACTTTTTGGGCCAATGAAACCACAACTGTTGGATGCACCAAAGCATTCCTTTGGTCGATGGGCACAAAAATGGTTAAAATCTTAAAACAATTAATGAAATTCTATCGTCCTCTCAAGTTGTAAGTTGACTCATATATGAAGTGGATTGAATCGAACCCAATGCCAAGGAGGTTCTGTCTTTTCAGTAATTTGGAGTTTCCTCTTTAAAGCCTTCTGGAAGTATTGGAGCCAATACTGTTTCCTATCATTCTTGGTTCCATCTTTATTGTCTTTTGCTGTTTAGTTTTTAGTTTTTTTCTTCATTTACTTCTACTCTTTCCTCCCAAAAACATGATATGCTTTTATAAGAGCTAATTCAGTTGCTGAGATTCTCTTTTGATCTACTAGTCACATTTGTCAAGAATTGAAATAAAATTTGAGTATGAGATGACTGATATTTGTACTTCCAATATTGCTTGCTCAGATGAGTGCTTGTGTGATTTCTGTTATGCAGGTACAGGAACGCCAAAGGATTGGAATTGGGCCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAAATGGGAATTCCATCAAGGAGGTAAATGATGGAAGTAAAGCAACTGGTGATGCTCAAGGTCCTCCACTTCTTACCATTTTGGCTGGTTTTTTTGTCTTGTCCCTCCTACTTTGGATAATCAGTTCTGCTGTCACGTCACTTATAGGTCTAGTCGTCAATCTGATCGCAACAAAGTAGTATAACATTATTGGCATAATTTCATGTTCGCTTAGAAACTTAAATCGGTGTTCTAAAAACTCACTTTTTAGCTTTTAGCTTATTTCTAGTGAAAGTTTTTATTTTCATCTCAATTACGCTTGCGCCTAGCTTCAGCCTTCAGCTATGTAAATAACCAAATATAGGCAGTTAGACTTGGTAATCTACAATTAAGTTAAGTAAGGTAGATTGAAAATACTTGGGTGATGCCTGAGCAACAACCAAGTAGTGTGCAGCTTCAATAATAACCACACAAAAAAAAATTGTAGTTTTTTTTTTTAAGAAAAAGAAAAAGAAATTGTGGTGGATAAATGTGGAGCATGAACTTGGGTGTTGCATGACTGCCTTATAAAGCGCACCTCATATAATTATATATCTAGGTGACTCAATCTCATTTGTAGTACTAAAACATACCAGATTCTCAATATATGGACTTATAC

mRNA sequence

GTGTGAACTCTCTCCTCTTTGTAATAAGACTGAAGGTGAATGAATGGCTTCCATCTTCGCCGCGCCGCCGTCTCAACTGAATCTCTCTTCTCGCCGACCAAGTTTGATCCACAGAGTCGTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCCGAACTGCTTTCCGATTCCTTCTTCCAGGTACAGGAACGCCAAAGGATTGGAATTGGGCCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAAATGGGAATTCCATCAAGGAGGTAAATGATGGAAGTAAAGCAACTGGTGATGCTCAAGGTCCTCCACTTCTTACCATTTTGGCTGGTTTTTTTGTCTTGTCCCTCCTACTTTGGATAATCAGTTCTGCTGTCACGTCACTTATAGGTCTAGTCGTCAATCTGATCGCAACAAAGTAGTATAACATTATTGGCATAATTTCATGTTCGCTTAGAAACTTAAATCGGTGTTCTAAAAACTCACTTTTTAGCTTTTAGCTTATTTCTAGTGAAAGTTTTTATTTTCATCTCAATTACGCTTGCGCCTAGCTTCAGCCTTCAGCTATGTAAATAACCAAATATAGGCAGTTAGACTTGGTAATCTACAATTAAGTTAAGTAAGGTAGATTGAAAATACTTGGGTGATGCCTGAGCAACAACCAAGTAGTGTGCAGCTTCAATAATAACCACACAAAAAAAAATTGTAGTTTTTTTTTTTAAGAAAAAGAAAAAGAAATTGTGGTGGATAAATGTGGAGCATGAACTTGGGTGTTGCATGACTGCCTTATAAAGCGCACCTCATATAATTATATATCTAGGTGACTCAATCTCATTTGTAGTACTAAAACATACCAGATTCTCAATATATGGACTTATAC

Coding sequence (CDS)

ATGGCTTCCATCTTCGCCGCGCCGCCGTCTCAACTGAATCTCTCTTCTCGCCGACCAAGTTTGATCCACAGAGTCGTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCCGAACTGCTTTCCGATTCCTTCTTCCAGGTACAGGAACGCCAAAGGATTGGAATTGGGCCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAAATGGGAATTCCATCAAGGAGGTAAATGATGGAAGTAAAGCAACTGGTGATGCTCAAGGTCCTCCACTTCTTACCATTTTGGCTGGTTTTTTTGTCTTGTCCCTCCTACTTTGGATAATCAGTTCTGCTGTCACGTCACTTATAGGTCTAGTCGTCAATCTGATCGCAACAAAGTAG

Protein sequence

MASIFAAPPSQLNLSSRRPSLIHRVVLPSIVGVKFHPNCFPIPSSRYRNAKGLELGQRSFSITASNSSNGNSIKEVNDGSKATGDAQGPPLLTILAGFFVLSLLLWIISSAVTSLIGLVVNLIATK
Homology
[Close]
BLAST of Tan0019776 vs. NCBI nr
Match: KAG6593336.1 (hypothetical protein SDJN03_12812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187.6 bits (475), Expect = 6.7e-44
Identity = 99/126 (78.57%), Postives = 110/126 (87.30%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLSSRRPSLIHRVVLPSIVGVKFHPNCFPIPSSRYRNAKGLELGQRSF 60
           MAS+FAAPPSQ++LSS RPSL H+  LPSIVGVKFH N FPIPS RY+N KGLEL QRSF
Sbjct: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60

Query: 61  SITASNSSNGNSIKEVNDGSKATGDAQGPPLLTILAGFFVLSLLLWIISSAVTSLIGLVV 120
           SITASNSS+GNS KE NDGSK TGDAQGPP LTILAGFFV SL+LWI+SS+VT+LI LVV
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 NLIATK 127
            LI+TK
Sbjct: 121 KLISTK 126

[Close]
BLAST of Tan0019776 vs. NCBI nr
Match: XP_023004845.1 (uncharacterized protein LOC111498025 [Cucurbita maxima])

HSP 1 Score: 185.7 bits (470), Expect = 2.5e-43
Identity = 99/126 (78.57%), Postives = 109/126 (86.51%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLSSRRPSLIHRVVLPSIVGVKFHPNCFPIPSSRYRNAKGLELGQRSF 60
           MAS+FAAPPSQL LSS RPSL H+  LPSIVGVKFH N FPIPS RY+N KGL+L QRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSNGNSIKEVNDGSKATGDAQGPPLLTILAGFFVLSLLLWIISSAVTSLIGLVV 120
           SITASNSS+GNS KE NDGSK TGDAQGPP LTILAGFFV SL+LWI+SS+VT+LI LVV
Sbjct: 61  SITASNSSDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 NLIATK 127
            LI+TK
Sbjct: 121 KLISTK 126

[Close]
BLAST of Tan0019776 vs. NCBI nr
Match: KAG7025683.1 (hypothetical protein SDJN02_12181 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.3 bits (469), Expect = 3.3e-43
Identity = 98/126 (77.78%), Postives = 109/126 (86.51%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLSSRRPSLIHRVVLPSIVGVKFHPNCFPIPSSRYRNAKGLELGQRSF 60
           MAS+FAAPPSQ++LSS RPSL H+  LPSIVGVKFH N FPIPS RY+N KGLEL QRSF
Sbjct: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60

Query: 61  SITASNSSNGNSIKEVNDGSKATGDAQGPPLLTILAGFFVLSLLLWIISSAVTSLIGLVV 120
           SITASNSS+GNS KE NDGSK T DAQGPP LTILAGFFV SL+LWI+SS+VT+LI LVV
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 NLIATK 127
            LI+TK
Sbjct: 121 KLISTK 126

[Close]
BLAST of Tan0019776 vs. NCBI nr
Match: XP_022959607.1 (uncharacterized protein LOC111460632 [Cucurbita moschata])

HSP 1 Score: 184.1 bits (466), Expect = 7.4e-43
Identity = 98/126 (77.78%), Postives = 108/126 (85.71%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLSSRRPSLIHRVVLPSIVGVKFHPNCFPIPSSRYRNAKGLELGQRSF 60
           MAS+FAAPPSQL LSS RPSL H+  LPSIVGVKFH N FPIPS RY+N KGL+L QRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSNGNSIKEVNDGSKATGDAQGPPLLTILAGFFVLSLLLWIISSAVTSLIGLVV 120
           SITASNSS+GNS KE NDGSK TGDAQGPP LTILAGFFV SL+LWI+SS+VT+LI L V
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALAV 120

Query: 121 NLIATK 127
            LI+TK
Sbjct: 121 KLISTK 126

[Close]
BLAST of Tan0019776 vs. NCBI nr
Match: XP_023513743.1 (uncharacterized protein LOC111778262 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-41
Identity = 97/126 (76.98%), Postives = 107/126 (84.92%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLSSRRPSLIHRVVLPSIVGVKFHPNCFPIPSSRYRNAKGLELGQRSF 60
           MAS+FAAPPSQL LSS RPSL H+  LPSIVGVKFH N FPIPS RY+N K L+L QRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKRLKLRQRSF 60

Query: 61  SITASNSSNGNSIKEVNDGSKATGDAQGPPLLTILAGFFVLSLLLWIISSAVTSLIGLVV 120
           SITASNSS+GNS KE  DGSK TGDAQGPP LTILAGFFV SL+LWI+SS+VT+LI LVV
Sbjct: 61  SITASNSSDGNSTKEKKDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 NLIATK 127
            LI+TK
Sbjct: 121 KLISTK 126

[Close]
BLAST of Tan0019776 vs. ExPASy TrEMBL
Match: A0A6J1KVQ7 (uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.2e-43
Identity = 99/126 (78.57%), Postives = 109/126 (86.51%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLSSRRPSLIHRVVLPSIVGVKFHPNCFPIPSSRYRNAKGLELGQRSF 60
           MAS+FAAPPSQL LSS RPSL H+  LPSIVGVKFH N FPIPS RY+N KGL+L QRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSNGNSIKEVNDGSKATGDAQGPPLLTILAGFFVLSLLLWIISSAVTSLIGLVV 120
           SITASNSS+GNS KE NDGSK TGDAQGPP LTILAGFFV SL+LWI+SS+VT+LI LVV
Sbjct: 61  SITASNSSDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 NLIATK 127
            LI+TK
Sbjct: 121 KLISTK 126

[Close]
BLAST of Tan0019776 vs. ExPASy TrEMBL
Match: A0A6J1H506 (uncharacterized protein LOC111460632 OS=Cucurbita moschata OX=3662 GN=LOC111460632 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.6e-43
Identity = 98/126 (77.78%), Postives = 108/126 (85.71%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLSSRRPSLIHRVVLPSIVGVKFHPNCFPIPSSRYRNAKGLELGQRSF 60
           MAS+FAAPPSQL LSS RPSL H+  LPSIVGVKFH N FPIPS RY+N KGL+L QRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSNGNSIKEVNDGSKATGDAQGPPLLTILAGFFVLSLLLWIISSAVTSLIGLVV 120
           SITASNSS+GNS KE NDGSK TGDAQGPP LTILAGFFV SL+LWI+SS+VT+LI L V
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALAV 120

Query: 121 NLIATK 127
            LI+TK
Sbjct: 121 KLISTK 126

[Close]
BLAST of Tan0019776 vs. ExPASy TrEMBL
Match: A0A6J1GPL5 (uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC111455984 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.8e-40
Identity = 97/127 (76.38%), Postives = 108/127 (85.04%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLSSRRPSLIHRVVLP-SIVGVKFHPNCFPIPSSRYRNAKGLELGQRS 60
           MASIF+APPS+LNL+S RPSLIH  VLP SI G+++H N FPIPS RYRN KGLEL QRS
Sbjct: 1   MASIFSAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRS 60

Query: 61  FSITASNSSNGNSIKEVNDGSKATGDAQGPPLLTILAGFFVLSLLLWIISSAVTSLIGLV 120
           FSITASNSS+GNSIKE N  SKA+ DAQGPP LTILAG FV SLLLW++SSA TSLIGLV
Sbjct: 61  FSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLV 120

Query: 121 VNLIATK 127
           V LI+TK
Sbjct: 121 VKLISTK 126

[Close]
BLAST of Tan0019776 vs. ExPASy TrEMBL
Match: A0A6J1JUC2 (uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 7.0e-39
Identity = 95/126 (75.40%), Postives = 106/126 (84.13%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLSSRRPSLIHRVVLP-SIVGVKFHPNCFPIPSSRYRNAKGLELGQRS 60
           MASIFAAPPS+LNL+S RPSLIH  VLP SI G+++H N FPIPS RYRN KGLEL  RS
Sbjct: 1   MASIFAAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRS 60

Query: 61  FSITASNSSNGNSIKEVNDGSKATGDAQGPPLLTILAGFFVLSLLLWIISSAVTSLIGLV 120
           FSITASNSS+GNSI+E N  SKA+ DAQGPP LTILAG FV SLLLW++SSA TSLIGLV
Sbjct: 61  FSITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLV 120

Query: 121 VNLIAT 126
           V LI+T
Sbjct: 121 VKLIST 125

[Close]
BLAST of Tan0019776 vs. ExPASy TrEMBL
Match: A0A6J1CV15 (uncharacterized protein LOC111015032 OS=Momordica charantia OX=3673 GN=LOC111015032 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.0e-37
Identity = 93/126 (73.81%), Postives = 103/126 (81.75%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLSSRRPSLIHRVVLPSIVGVKFHPNCFPIPSSRYRNAKGLELGQRSF 60
           MASIFAAPPSQLNL SRR S   R +LPSIVGVK H + FP+PS R+R+ KGLEL QRSF
Sbjct: 1   MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF 60

Query: 61  SITASNSSNGNSIKEVNDGSKATGDAQGPPLLTILAGFFVLSLLLWIISSAVTSLIGLVV 120
           SITASNSS+GNSIKE     +ATGDAQGPP LTILAGFFV SL++W+ISSA TSLIGLVV
Sbjct: 61  SITASNSSDGNSIKE-----EATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVV 120

Query: 121 NLIATK 127
            LI  K
Sbjct: 121 KLIPAK 121

The following BLAST results are available for this feature:
BLAST of Tan0019776 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0019776 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6593336.16.7e-4478.57hypothetical protein SDJN03_12812, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023004845.12.5e-4378.57uncharacterized protein LOC111498025 [Cucurbita maxima][more]
KAG7025683.13.3e-4377.78hypothetical protein SDJN02_12181 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022959607.17.4e-4377.78uncharacterized protein LOC111460632 [Cucurbita moschata][more]
XP_023513743.11.1e-4176.98uncharacterized protein LOC111778262 isoform X3 [Cucurbita pepo subsp. pepo][more]
BLAST of Tan0019776 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KVQ71.2e-4378.57uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025... [more]
A0A6J1H5063.6e-4377.78uncharacterized protein LOC111460632 OS=Cucurbita moschata OX=3662 GN=LOC1114606... [more]
A0A6J1GPL54.8e-4076.38uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC1114559... [more]
A0A6J1JUC27.0e-3975.40uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436... [more]
A0A6J1CV151.0e-3773.81uncharacterized protein LOC111015032 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
BLAST of Tan0019776 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0019776.1Tan0019776.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane