Tan0019763 (gene) Snake gourd v1

Overview


Name	Tan0019763
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG01: 478725 .. 479436 (-)
RNA-Seq Expression	Tan0019763
Synteny	Tan0019763

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCAACGAGTTGTCCTAAGTCTTAGGAGCTCCTTCCAGTTCCACTATAAAACCTCCCCCCTCACTCCTCCATTTCCTCGTCCTCATTTGCAACGCATCGATATTTTGATCCCTTTTGATTTGTGCGTGTAATTCGTTTCATCTCCCACCTCCACCAGCCTCGCATTAATCCCTCCCAACTAACATTCTTTTTCCATAATGGGAGGTTGTGCGAGCAAACCCAAGGGTATGGATCTCCACCCAACTGAGGTTCCCGTCACACCCACCAACAAACCTGAGACGGGAAACAATAATGGAGGTGAGAGTGCAGCAGCACCTTTGGTGGACCTGTCTGAGTCCAACGAACCAAAACAGGAAGCTGGTGGAGATCCCGATCCAACCTCTGCAGTCGCACCATCAAAGGCTGTTGAACCAGAGCTAGAGCTTGTGCTTGAGCCTGAGCTTGCTGGAGTACCTGATCGTAAATCGACTACTGCCGACCTTACCCAGGCCGAGAAAGTCGAAACCATTGCCAAAGAATCAGAGGACAAGACGACTGAGGCTACTGTCCACACCCCGTCCAAGGAGGGCCACCCTAAAACCCATGTTGTTGCCGACACCACCAAATCAGATGCCACTCCAACCGCCCCCGAAGATAAAAGCGTTGCACCCGTTGTAGCGGTTTAAACTCCTTTATATATTCATTTCACATCCACAATCCACATCCACCAC

mRNA sequence

AAACCAACGAGTTGTCCTAAGTCTTAGGAGCTCCTTCCAGTTCCACTATAAAACCTCCCCCCTCACTCCTCCATTTCCTCGTCCTCATTTGCAACGCATCGATATTTTGATCCCTTTTGATTTGTGCGTGTAATTCGTTTCATCTCCCACCTCCACCAGCCTCGCATTAATCCCTCCCAACTAACATTCTTTTTCCATAATGGGAGGTTGTGCGAGCAAACCCAAGGGTATGGATCTCCACCCAACTGAGGTTCCCGTCACACCCACCAACAAACCTGAGACGGGAAACAATAATGGAGGTGAGAGTGCAGCAGCACCTTTGGTGGACCTGTCTGAGTCCAACGAACCAAAACAGGAAGCTGGTGGAGATCCCGATCCAACCTCTGCAGTCGCACCATCAAAGGCTGTTGAACCAGAGCTAGAGCTTGTGCTTGAGCCTGAGCTTGCTGGAGTACCTGATCGTAAATCGACTACTGCCGACCTTACCCAGGCCGAGAAAGTCGAAACCATTGCCAAAGAATCAGAGGACAAGACGACTGAGGCTACTGTCCACACCCCGTCCAAGGAGGGCCACCCTAAAACCCATGTTGTTGCCGACACCACCAAATCAGATGCCACTCCAACCGCCCCCGAAGATAAAAGCGTTGCACCCGTTGTAGCGGTTTAAACTCCTTTATATATTCATTTCACATCCACAATCCACATCCACCAC

Coding sequence (CDS)

ATGGGAGGTTGTGCGAGCAAACCCAAGGGTATGGATCTCCACCCAACTGAGGTTCCCGTCACACCCACCAACAAACCTGAGACGGGAAACAATAATGGAGGTGAGAGTGCAGCAGCACCTTTGGTGGACCTGTCTGAGTCCAACGAACCAAAACAGGAAGCTGGTGGAGATCCCGATCCAACCTCTGCAGTCGCACCATCAAAGGCTGTTGAACCAGAGCTAGAGCTTGTGCTTGAGCCTGAGCTTGCTGGAGTACCTGATCGTAAATCGACTACTGCCGACCTTACCCAGGCCGAGAAAGTCGAAACCATTGCCAAAGAATCAGAGGACAAGACGACTGAGGCTACTGTCCACACCCCGTCCAAGGAGGGCCACCCTAAAACCCATGTTGTTGCCGACACCACCAAATCAGATGCCACTCCAACCGCCCCCGAAGATAAAAGCGTTGCACCCGTTGTAGCGGTTTAA

Protein sequence

MGGCASKPKGMDLHPTEVPVTPTNKPETGNNNGGESAAAPLVDLSESNEPKQEAGGDPDPTSAVAPSKAVEPELELVLEPELAGVPDRKSTTADLTQAEKVETIAKESEDKTTEATVHTPSKEGHPKTHVVADTTKSDATPTAPEDKSVAPVVAV

Homology

[Close]

BLAST of Tan0019763 vs. NCBI nr
Match: XP_038875809.1 (uncharacterized protein LOC120068172 [Benincasa hispida])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-26
Identity = 90/163 (55.21%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPTEVPVTPTNKPE--------TGNNNGGESAAAPLVDLSESNEPKQ 60
           MGGCASKPKGMDLHP EVP TPT+KP+         GNN+GGESA+  LVDLSESNEPKQ
Sbjct: 1   MGGCASKPKGMDLHPNEVPATPTDKPQPQAAETISQGNNDGGESASTTLVDLSESNEPKQ 60

Query: 61  -EAGGDPDPTSAVAPSKAVEPELELVLEPELAGVPD-RKSTTADLTQAEKVETIAKESED 120
            EAGGD +P  A                    GVP+  KSTT +LT  EKVE IAKESED
Sbjct: 61  DEAGGDVEPEPA-------------------PGVPNYHKSTTPELTHVEKVEAIAKESED 120

Query: 121 KTTEATVHTPSKEGHPKTHVVADTTKSDATPT-APEDKSVAPV 153
                  +  +KEGHP+T   AD  KSDATPT   E K++APV
Sbjct: 121 -------NIQTKEGHPRT-TSADAAKSDATPTPTSEHKTMAPV 136

[Close]

BLAST of Tan0019763 vs. NCBI nr
Match: XP_011653400.1 (uncharacterized protein LOC105435210 [Cucumis sativus] >KGN53750.1 hypothetical protein Csa_014628 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-26
Identity = 88/163 (53.99%), Postives = 107/163 (65.64%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPTEVPVTPTNKPET--------GNNNGGESAAAPLVDLSESNEPKQ 60
           MGGCASKPKGMDLHP+EV  TPTNKP+T        GNN+GG+SA+  LVDLS+SNE KQ
Sbjct: 1   MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQ 60

Query: 61  E-AGGDPDPTSAVAPSKAVEPELELVLEPELAGVPD-RKSTTADLTQAEKVETIAKESED 120
           + AGGD +                  LEP  +GVP+  KST  +LTQAEKVE IAKESED
Sbjct: 61  DKAGGDVE------------------LEP-ASGVPNYDKSTALNLTQAEKVEGIAKESED 120

Query: 121 KTTEATVHTPSKEGHPKTHVVADTTKSDATPT-APEDKSVAPV 153
           K+     +T +KEGHP+  + AD  K DATPT   E K++AP+
Sbjct: 121 KSEAIVKNTQTKEGHPRMTIGADAAKLDATPTPTSEPKNMAPL 144

[Close]

BLAST of Tan0019763 vs. NCBI nr
Match: TYK04607.1 (uncharacterized protein E5676_scaffold351G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 8.6e-25
Identity = 87/167 (52.10%), Postives = 102/167 (61.08%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPTEVPVTPTNKPE------------TGNNNGGESAAAPLVDLSESN 60
           MGGCASKPKGMDLHPTEVP TPTN+P+             GNN+GGE+A+  LVDLS+S 
Sbjct: 1   MGGCASKPKGMDLHPTEVPTTPTNEPQPQSQPKATETITQGNNDGGENASTTLVDLSKSF 60

Query: 61  EPKQ-EAGGDPDPTSAVAPSKAVEPELELVLEPELAGVPD-RKSTTADLTQAEKVETIAK 120
           EPKQ EA GD    SA                    GVP+  KSTT +LT  EKVE IAK
Sbjct: 61  EPKQDEAVGDVKLKSA-------------------PGVPNYDKSTTPNLTHDEKVEGIAK 120

Query: 121 ESEDKTTEATVHTPSKEGHPKTHVVADTTKSDATPT-APEDKSVAPV 153
           E+EDK      +T +KEGHP+T   AD  KSDATPT   E K++AP+
Sbjct: 121 ETEDKNEAIVQNTQTKEGHPRTTFGADAAKSDATPTPTSEHKTMAPL 148

[Close]

BLAST of Tan0019763 vs. NCBI nr
Match: KAA0056646.1 (uncharacterized protein E6C27_scaffold288G001770 [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 2.5e-24
Identity = 84/166 (50.60%), Postives = 102/166 (61.45%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPTEVPVTPTNKPE------------TGNNNGGESAAAPLVDLSESN 60
           MGGCASKPKGMDLHPTEVP TPTN+P+             GNN+GGE+A+  LVDLS+S 
Sbjct: 1   MGGCASKPKGMDLHPTEVPTTPTNEPQPQSQPKATETITQGNNDGGENASTTLVDLSKSF 60

Query: 61  EPKQ-EAGGDPDPTSAVAPSKAVEPELELVLEPELAGVPDRKSTTADLTQAEKVETIAKE 120
           EPKQ EA GD                ++L   P ++     KSTT +LT  EKVE IAKE
Sbjct: 61  EPKQDEAVGD----------------VKLKSAPRVSNYD--KSTTPNLTHDEKVEGIAKE 120

Query: 121 SEDKTTEATVHTPSKEGHPKTHVVADTTKSDATPT-APEDKSVAPV 153
           +EDK      +T +KEGHP+T   AD  KSDATPT   E K++AP+
Sbjct: 121 TEDKNEAIVQNTQTKEGHPRTTFGADAAKSDATPTPTSEHKTMAPL 148

[Close]

BLAST of Tan0019763 vs. ExPASy TrEMBL
Match: A0A0A0KVU8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G120780 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 7.5e-27
Identity = 88/163 (53.99%), Postives = 107/163 (65.64%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPTEVPVTPTNKPET--------GNNNGGESAAAPLVDLSESNEPKQ 60
           MGGCASKPKGMDLHP+EV  TPTNKP+T        GNN+GG+SA+  LVDLS+SNE KQ
Sbjct: 1   MGGCASKPKGMDLHPSEVSATPTNKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETKQ 60

Query: 61  E-AGGDPDPTSAVAPSKAVEPELELVLEPELAGVPD-RKSTTADLTQAEKVETIAKESED 120
           + AGGD +                  LEP  +GVP+  KST  +LTQAEKVE IAKESED
Sbjct: 61  DKAGGDVE------------------LEP-ASGVPNYDKSTALNLTQAEKVEGIAKESED 120

Query: 121 KTTEATVHTPSKEGHPKTHVVADTTKSDATPT-APEDKSVAPV 153
           K+     +T +KEGHP+  + AD  K DATPT   E K++AP+
Sbjct: 121 KSEAIVKNTQTKEGHPRMTIGADAAKLDATPTPTSEPKNMAPL 144

[Close]

BLAST of Tan0019763 vs. ExPASy TrEMBL
Match: A0A5D3BYJ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00110 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.1e-25
Identity = 87/167 (52.10%), Postives = 102/167 (61.08%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPTEVPVTPTNKPE------------TGNNNGGESAAAPLVDLSESN 60
           MGGCASKPKGMDLHPTEVP TPTN+P+             GNN+GGE+A+  LVDLS+S 
Sbjct: 1   MGGCASKPKGMDLHPTEVPTTPTNEPQPQSQPKATETITQGNNDGGENASTTLVDLSKSF 60

Query: 61  EPKQ-EAGGDPDPTSAVAPSKAVEPELELVLEPELAGVPD-RKSTTADLTQAEKVETIAK 120
           EPKQ EA GD    SA                    GVP+  KSTT +LT  EKVE IAK
Sbjct: 61  EPKQDEAVGDVKLKSA-------------------PGVPNYDKSTTPNLTHDEKVEGIAK 120

Query: 121 ESEDKTTEATVHTPSKEGHPKTHVVADTTKSDATPT-APEDKSVAPV 153
           E+EDK      +T +KEGHP+T   AD  KSDATPT   E K++AP+
Sbjct: 121 ETEDKNEAIVQNTQTKEGHPRTTFGADAAKSDATPTPTSEHKTMAPL 148

[Close]

BLAST of Tan0019763 vs. ExPASy TrEMBL
Match: A0A5A7UQQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001770 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-24
Identity = 84/166 (50.60%), Postives = 102/166 (61.45%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPTEVPVTPTNKPE------------TGNNNGGESAAAPLVDLSESN 60
           MGGCASKPKGMDLHPTEVP TPTN+P+             GNN+GGE+A+  LVDLS+S 
Sbjct: 1   MGGCASKPKGMDLHPTEVPTTPTNEPQPQSQPKATETITQGNNDGGENASTTLVDLSKSF 60

Query: 61  EPKQ-EAGGDPDPTSAVAPSKAVEPELELVLEPELAGVPDRKSTTADLTQAEKVETIAKE 120
           EPKQ EA GD                ++L   P ++     KSTT +LT  EKVE IAKE
Sbjct: 61  EPKQDEAVGD----------------VKLKSAPRVSNYD--KSTTPNLTHDEKVEGIAKE 120

Query: 121 SEDKTTEATVHTPSKEGHPKTHVVADTTKSDATPT-APEDKSVAPV 153
           +EDK      +T +KEGHP+T   AD  KSDATPT   E K++AP+
Sbjct: 121 TEDKNEAIVQNTQTKEGHPRTTFGADAAKSDATPTPTSEHKTMAPL 148

The following BLAST results are available for this feature:

BLAST of Tan0019763 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0019763 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875809.1	1.2e-26	55.21	uncharacterized protein LOC120068172 [Benincasa hispida]	[more]
XP_011653400.1	1.6e-26	53.99	uncharacterized protein LOC105435210 [Cucumis sativus] >KGN53750.1 hypothetical ...	[more]
TYK04607.1	8.6e-25	52.10	uncharacterized protein E5676_scaffold351G00110 [Cucumis melo var. makuwa]	[more]
KAA0056646.1	2.5e-24	50.60	uncharacterized protein E6C27_scaffold288G001770 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0019763 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVU8	7.5e-27	53.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G120780 PE=4 SV=1	[more]
A0A5D3BYJ6	4.1e-25	52.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UQQ8	1.2e-24	50.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Tan0019763 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0019763.1	Tan0019763.1	mRNA