Tan0019647 (gene) Snake gourd v1

Overview
NameTan0019647
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransposase
LocationLG11: 35232309 .. 35234890 (-)
RNA-Seq ExpressionTan0019647
SyntenyTan0019647
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGAATGTTTGAAGTCTCCACCGCCGACATATAACCACATCGAGCAAGTTCATTGGGATGAATTCGTTGGTAAAGTTCTATCTGAAGAGTTTCAAGTAAGTATTGAAAAATGAATTATTTTTTGTTTATACATGTTTACACAAAGATACTAATTAACCTTGTGTTGTGCTATAATTGTGTGATGTAGAAATTAAGCAGTTTGCAAAAGAAGAGACGTTCCAAAAATAAATACAATCATAGGGTTGCTCGTAAGGGATACGCAAATTTTGTGGAAGAGTTGGTATGTTTTGATTTCTGAATTTATACATTAGTATGTTATGTCTGCTCATTTATTAATTATATGACTACATACGTTTTTAGATTAAAAAATGACAAGTAGATTTGGATGCAAATCGAGCTAAGCTATGGATACAAGCTCGACAACGAAAGGATGGCAAATTTTTGAATGAAGAGATTGCAAATGTTGCAGTCAGAATTGTAAGCAATAATGTTCATATATTTTTATACTTTATTGACATTATACTAGAGTAGTAAATATATATTTATATTTTTATTCAATTGTAGGATCAGCTAGCAAAAGATCCAGAGATGCGCATGATGATATTCTAAAAGAGGCATTAGGCATTCCTGAACACTCAGGACGTGTAAGAGGTGCGGGAGGTTTAATCAAACCCTCATTCCTCTTTCATAAACCCACACCTTCGACTTCGAAAAGTAACGTCATGACTGACGAAGAAACGAGTTGGAAGAAAGAAAAGGAAGAACTGACTACTCGATACAGTCAAATGACGACAAAACACACACGTGAAAAAGATGGAGAAAAACGGTGTGGTGATGTCACTCTCTTGCCAAATAAGGGTAGTTGTCAAGTACAACCACCCATTACTTCGACATCTACTGAAAATCTTGATTAGGTAACTCTTTTTCTAAATATTCGTTAATTGAATTTTAAGAAAATGTATATAAATACTAAGTCATAATTTTTAATATACTCTGTAGGGAAAATCTTGTGATTTAGCTGTTGAAAATATAAACAATATTGTGGCATCAGGAATGGTTTATGAGAGGTTAAGTCCGCATGAAGTTGTGTACGGTGTGCCTCTCACATCGAACGATGTAATAGTACTTATCACTCTTGTATTTGATTTCAATGCTGCATTGCCTATACCGATAGCTGGGAGTATTGGGACAGTTTCAAATGCGATTGGTTCTCACGTTCCATGGCCAAAGAATCTTGTAATAGTAGATAAAATAGAAAAGGTAAATTTATTTGAAAACGCTCGTTGTTGTTTAACTTAATGTCTATCACTTTTAATATATAACATCGTGTTCGTAGGAACGTAAGAAGCCTCACCGTGAGCGAGCGGCATTAAGGGAGAATAGAGGTAGAAATGATGTGCCACGAGTGCATATGCCACTTGTAGATACATGATCAAACTTCTTGAAGGCATGAGGACTGAGTATATAGACATCCCAATATCTGATCATGTGTTTGGATATCAATTCAACTTTCATTTAATGAAAGACAGCATGCAGTAGCTCTGCATGATTGAGGAACTTGCAATCTCGGTTATATCAGCTTATATCGTGTAAGTATTATTTAATTATGTAGACTTTGATATTCTTGTTATTTACCACTTTAGGATATACATAGTAGCTGGTTTGTTAGTTTTAAGGTATGCTTAAAAATTGTGACATGTGATTTATTCTTGTTTTGAAGTTGTTGAGTGTATGTTTTGTTTCATTTATGGTGGTTGAGTATTCTTGAATCATTAAAATGGAAGTGAATTGAAGTTTGATTGAGTTATCTGAATGTTGAGTATAGAAGTGTGTTTTGGTTAAACACGGGTACATGTAAAATTTTTGTATTGTTGTAATTATGTTGTTATGTTGCTGAAATTTAGGAGTATTCTTGAATCGTTAAAATGATTAGTGAATTGGAGTTTGATTGAGTTATCTGGATGTTAAGGTTAGAAGTGTGTTTTTTTTTTTTTCAGATAGGTACATGTAACATTTTGCTATTGTTGTAATTATGTTGTTATACTGCCGAAATTTTCGAGACTTAATTAAGAGTAAACTCCATTTTAGGATAGACATTAACTAGTTTGTTAGTTTTGAGTTCTGCTTAGCAATTGCGACATGTGAGTTATACTTGCTTTGAAGTTGTTGAGTGTATGTTTTGTATCATTTTTGGTAGTCTAGCGTTATTGAATCGTTAAAATGATTAGTGAATTGGAGTTTGATTGAGTTATTTGGATGTTGAGTTTAGAAGTGTGTTTTTCTTTTAGAAAGGTACATTGTATCATATATTATTAATTTTCATTGTAACATTTTAAACTTTAATATTTTTTTATTTATTGTTAGGTACTTGTGTCAATCTCAACCTATCATATTAGAACAATATGCATTCCTTCAACCATCCTTGATTTCATATGCCTCTGGACCTGAAGAGCAACGTTGTCGATTCCTATGTAATAGGTTACGAGAGACCAAGAATAAAATATTGATTTGTCCTTGTAATTCAAGGTACGTAAACCATGTGCTCATTAATTTACTTGTATTTTGTATATATTCCTAA

mRNA sequence

ATGCCTGAATGTTTGAAGTCTCCACCGCCGACATATAACCACATCGAGCAAGTTCATTGGGATGAATTCGTTGGTAAAGTTCTATCTGAAGAGTTTCAAAAATTAAGCAGTTTGCAAAAGAAGAGACGTTCCAAAAATAAATACAATCATAGGGTTGCTCGTAAGGGATACGCAAATTTTGTGGAAGAGTTGGTATTACTTATCACTCTTGTATTTGATTTCAATGCTGCATTGCCTATACCGATAGCTGGGAGTATTGGGACAGTTTCAAATGCGATTGGTTCTCACGTTCCATGGCCAAAGAATCTTGTAATAGTAGATAAAATAGAAAAGACCAAGAATAAAATATTGATTTGTCCTTGTAATTCAAGGTACGTAAACCATGTGCTCATTAATTTACTTGTATTTTGTATATATTCCTAA

Coding sequence (CDS)

ATGCCTGAATGTTTGAAGTCTCCACCGCCGACATATAACCACATCGAGCAAGTTCATTGGGATGAATTCGTTGGTAAAGTTCTATCTGAAGAGTTTCAAAAATTAAGCAGTTTGCAAAAGAAGAGACGTTCCAAAAATAAATACAATCATAGGGTTGCTCGTAAGGGATACGCAAATTTTGTGGAAGAGTTGGTATTACTTATCACTCTTGTATTTGATTTCAATGCTGCATTGCCTATACCGATAGCTGGGAGTATTGGGACAGTTTCAAATGCGATTGGTTCTCACGTTCCATGGCCAAAGAATCTTGTAATAGTAGATAAAATAGAAAAGACCAAGAATAAAATATTGATTTGTCCTTGTAATTCAAGGTACGTAAACCATGTGCTCATTAATTTACTTGTATTTTGTATATATTCCTAA

Protein sequence

MPECLKSPPPTYNHIEQVHWDEFVGKVLSEEFQKLSSLQKKRRSKNKYNHRVARKGYANFVEELVLLITLVFDFNAALPIPIAGSIGTVSNAIGSHVPWPKNLVIVDKIEKTKNKILICPCNSRYVNHVLINLLVFCIYS
Homology
[Close]
BLAST of Tan0019647 vs. NCBI nr
Match: XP_022159009.1 (uncharacterized protein LOC111025455 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-14
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 2   PECLKSPPPTYNHIEQVHWDEFVGKVLSEEFQKLSSLQKKRRSKNKYNHRVARKGYANFV 61
           P+CL SPP  Y+HIEQ HWD FV   LSEEF  LS  QK+RR+ NKYNH ++RKGYAN  
Sbjct: 107 PQCLASPPEKYDHIEQSHWDAFVXARLSEEFXNLSXAQKERRAYNKYNHXLSRKGYANLX 166

Query: 62  EELV 66
           EELV
Sbjct: 167 EELV 170

[Close]
BLAST of Tan0019647 vs. NCBI nr
Match: XP_010102092.1 (uncharacterized protein LOC21385414 isoform X1 [Morus notabilis] >EXB91951.1 hypothetical protein L484_001825 [Morus notabilis])

HSP 1 Score: 87.8 bits (216), Expect = 8.0e-14
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 2   PECLKSPPPTYNHIEQVHWDEFVGKVLSEEFQKLSSLQKKRRSKNKYNHRVARKGYANFV 61
           PE LK+PP  YN I+Q HWDEFV   LSEEF KLS LQK+RR+KNKY HR+ RKG+A   
Sbjct: 547 PELLKNPPKDYNFIKQKHWDEFVRSRLSEEFLKLSQLQKERRTKNKYKHRLGRKGFARLQ 606

Query: 62  EEL 65
           EEL
Sbjct: 607 EEL 609

[Close]
BLAST of Tan0019647 vs. NCBI nr
Match: XP_024025090.1 (uncharacterized protein LOC21385414 isoform X2 [Morus notabilis] >XP_024025091.1 uncharacterized protein LOC21385414 isoform X2 [Morus notabilis])

HSP 1 Score: 87.8 bits (216), Expect = 8.0e-14
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 2   PECLKSPPPTYNHIEQVHWDEFVGKVLSEEFQKLSSLQKKRRSKNKYNHRVARKGYANFV 61
           PE LK+PP  YN I+Q HWDEFV   LSEEF KLS LQK+RR+KNKY HR+ RKG+A   
Sbjct: 414 PELLKNPPKDYNFIKQKHWDEFVRSRLSEEFLKLSQLQKERRTKNKYKHRLGRKGFARLQ 473

Query: 62  EEL 65
           EEL
Sbjct: 474 EEL 476

[Close]
BLAST of Tan0019647 vs. NCBI nr
Match: XP_022148697.1 (uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148698.1 uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148699.1 uncharacterized protein LOC111017298 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-13
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 2   PECLKSPPPTYNHIEQVHWDEFVGKVLSEEFQKLSSLQKKRRSKNKYNHRVARKGYANFV 61
           P  L++PP TY+HIE  HW +FV   LSEEF+ + +LQ +RR+KNKYNHR++RKGYAN +
Sbjct: 356 PHRLENPPDTYSHIESHHWRQFVKSRLSEEFENMRTLQVQRRAKNKYNHRLSRKGYANLI 415

Query: 62  EEL 65
           EEL
Sbjct: 416 EEL 418

[Close]
BLAST of Tan0019647 vs. NCBI nr
Match: KAA0042315.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-12
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 2   PECLKSPPPTYNHIEQVHWDEFVGKVLSEEFQKLSSLQKKRRSKNKYNHRVARKGYANFV 61
           P+ L+ PP  Y+ IEQ HW+EFV   LSE FQ+   LQ+ RRSKNKYNHR++RKGYAN  
Sbjct: 139 PQLLQVPPEKYSFIEQNHWEEFVRSRLSETFQEKRKLQQDRRSKNKYNHRISRKGYANLK 198

Query: 62  EELV 66
           EE+V
Sbjct: 199 EEMV 202

[Close]
BLAST of Tan0019647 vs. ExPASy TrEMBL
Match: A0A6J1E143 (uncharacterized protein LOC111025455 OS=Momordica charantia OX=3673 GN=LOC111025455 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.0e-14
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 2   PECLKSPPPTYNHIEQVHWDEFVGKVLSEEFQKLSSLQKKRRSKNKYNHRVARKGYANFV 61
           P+CL SPP  Y+HIEQ HWD FV   LSEEF  LS  QK+RR+ NKYNH ++RKGYAN  
Sbjct: 107 PQCLASPPEKYDHIEQSHWDAFVXARLSEEFXNLSXAQKERRAYNKYNHXLSRKGYANLX 166

Query: 62  EELV 66
           EELV
Sbjct: 167 EELV 170

[Close]
BLAST of Tan0019647 vs. ExPASy TrEMBL
Match: W9RSV2 (PHD domain-containing protein OS=Morus notabilis OX=981085 GN=L484_001825 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.9e-14
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 2   PECLKSPPPTYNHIEQVHWDEFVGKVLSEEFQKLSSLQKKRRSKNKYNHRVARKGYANFV 61
           PE LK+PP  YN I+Q HWDEFV   LSEEF KLS LQK+RR+KNKY HR+ RKG+A   
Sbjct: 547 PELLKNPPKDYNFIKQKHWDEFVRSRLSEEFLKLSQLQKERRTKNKYKHRLGRKGFARLQ 606

Query: 62  EEL 65
           EEL
Sbjct: 607 EEL 609

[Close]
BLAST of Tan0019647 vs. ExPASy TrEMBL
Match: A0A6J1D4R5 (uncharacterized protein LOC111017298 OS=Momordica charantia OX=3673 GN=LOC111017298 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-13
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 2   PECLKSPPPTYNHIEQVHWDEFVGKVLSEEFQKLSSLQKKRRSKNKYNHRVARKGYANFV 61
           P  L++PP TY+HIE  HW +FV   LSEEF+ + +LQ +RR+KNKYNHR++RKGYAN +
Sbjct: 356 PHRLENPPDTYSHIESHHWRQFVKSRLSEEFENMRTLQVQRRAKNKYNHRLSRKGYANLI 415

Query: 62  EEL 65
           EEL
Sbjct: 416 EEL 418

[Close]
BLAST of Tan0019647 vs. ExPASy TrEMBL
Match: A0A5A7TLJ5 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold795G00020 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 9.6e-13
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 0 

Query: 2   PECLKSPPPTYNHIEQVHWDEFVGKVLSEEFQKLSSLQKKRRSKNKYNHRVARKGYANFV 61
           P+ L+ PP  Y+ IEQ HW+EFV   LSE FQ+   LQ+ RRSKNKYNHR++RKGYAN  
Sbjct: 139 PQLLQVPPEKYSFIEQNHWEEFVRSRLSETFQEKRKLQQDRRSKNKYNHRISRKGYANLK 198

Query: 62  EELV 66
           EE+V
Sbjct: 199 EEMV 202

[Close]
BLAST of Tan0019647 vs. ExPASy TrEMBL
Match: A0A5D3DME5 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00220 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.8e-12
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 0 

Query: 2   PECLKSPPPTYNHIEQVHWDEFVGKVLSEEFQKLSSLQKKRRSKNKYNHRVARKGYANFV 61
           P+ L+ PP  Y+ IEQ HW+EFV   LSE FQ+   LQ+ RRSKNKYNHR++RKGYAN  
Sbjct: 139 PQLLQVPPEKYSFIEQNHWEEFVRSRLSETFQEKRKLQQDRRSKNKYNHRISRKGYANLK 198

Query: 62  EEL 65
           EE+
Sbjct: 199 EEM 201

The following BLAST results are available for this feature:
BLAST of Tan0019647 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0019647 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159009.12.1e-1465.63uncharacterized protein LOC111025455 [Momordica charantia][more]
XP_010102092.18.0e-1466.67uncharacterized protein LOC21385414 isoform X1 [Morus notabilis] >EXB91951.1 hyp... [more]
XP_024025090.18.0e-1466.67uncharacterized protein LOC21385414 isoform X2 [Morus notabilis] >XP_024025091.1... [more]
XP_022148697.14.0e-1360.32uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148698.1 uncha... [more]
KAA0042315.12.0e-1260.94putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa][more]
BLAST of Tan0019647 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E1431.0e-1465.63uncharacterized protein LOC111025455 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
W9RSV23.9e-1466.67PHD domain-containing protein OS=Morus notabilis OX=981085 GN=L484_001825 PE=4 S... [more]
A0A6J1D4R51.9e-1360.32uncharacterized protein LOC111017298 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A5A7TLJ59.6e-1360.94Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DME52.8e-1260.32Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of Tan0019647 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0019647.1Tan0019647.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0016787 hydrolase activity