Tan0019480 (gene) Snake gourd v1

Overview


Name	Tan0019480
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	CLAVATA3/ESR (CLE)-related protein 17-like
Location	LG11: 17668215 .. 17668781 (+)
RNA-Seq Expression	Tan0019480
Synteny	Tan0019480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATATTAGCCTTAACATCATGTGGTTAAACCCATAAGACACGCACCAAAATCTTCTCTATGTTTTTCATTTTTTTCTCTTTCCTTTTCTCAACACTTTGTTTTTTTTTCTCGGGAAACAAACACCCTCACGGCCACCCCCAACAACCCACCCACCTCCGTTTCACGGCGGCGGAATGAGAGTACGAACCAGAACCTGCAGTCGCCACGGCTCTGGAGCCACCGCCCCTGCCGCCGCCGCCGCCACACTTCTTCTCTTCTTCTGGGTCATTCTCATTTCAGCTCCGGCCACTCTCTGTCTTCATCTACCGCCGCCGTCGAGGAAATTAGTCCGCTTCTCCACGGCGTCGTTTCCGCATGCACCTCCAGCAGCTTCCCCAGCTGAGTTCCTCGGCCGTCGAACCGCAGCCGCCGCCGCCGCCGCTTACGGCGACGACAAGCGGTTAATCCATACGGGTCCGAATCCTCTTCACAACTAAGTTCATCGATTAATTTTTTTTTAAATTTCTGAATATTTAGAAGATGGGTAGATTTAGATCTTTGTGATGAACAACTTTTTTTGGGGGG

mRNA sequence

CAAATATTAGCCTTAACATCATGTGGTTAAACCCATAAGACACGCACCAAAATCTTCTCTATGTTTTTCATTTTTTTCTCTTTCCTTTTCTCAACACTTTGTTTTTTTTTCTCGGGAAACAAACACCCTCACGGCCACCCCCAACAACCCACCCACCTCCGTTTCACGGCGGCGGAATGAGAGTACGAACCAGAACCTGCAGTCGCCACGGCTCTGGAGCCACCGCCCCTGCCGCCGCCGCCGCCACACTTCTTCTCTTCTTCTGGGTCATTCTCATTTCAGCTCCGGCCACTCTCTGTCTTCATCTACCGCCGCCGTCGAGGAAATTAGTCCGCTTCTCCACGGCGTCGTTTCCGCATGCACCTCCAGCAGCTTCCCCAGCTGAGTTCCTCGGCCGTCGAACCGCAGCCGCCGCCGCCGCCGCTTACGGCGACGACAAGCGGTTAATCCATACGGGTCCGAATCCTCTTCACAACTAAGTTCATCGATTAATTTTTTTTTAAATTTCTGAATATTTAGAAGATGGGTAGATTTAGATCTTTGTGATGAACAACTTTTTTTGGGGGG

Coding sequence (CDS)

ATGAGAGTACGAACCAGAACCTGCAGTCGCCACGGCTCTGGAGCCACCGCCCCTGCCGCCGCCGCCGCCACACTTCTTCTCTTCTTCTGGGTCATTCTCATTTCAGCTCCGGCCACTCTCTGTCTTCATCTACCGCCGCCGTCGAGGAAATTAGTCCGCTTCTCCACGGCGTCGTTTCCGCATGCACCTCCAGCAGCTTCCCCAGCTGAGTTCCTCGGCCGTCGAACCGCAGCCGCCGCCGCCGCCGCTTACGGCGACGACAAGCGGTTAATCCATACGGGTCCGAATCCTCTTCACAACTAA

Protein sequence

MRVRTRTCSRHGSGATAPAAAAATLLLFFWVILISAPATLCLHLPPPSRKLVRFSTASFPHAPPAASPAEFLGRRTAAAAAAAYGDDKRLIHTGPNPLHN

Homology

[Close]

BLAST of Tan0019480 vs. ExPASy Swiss-Prot
Match: Q8L9H6 (CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-05
Identity = 35/88 (39.77%), Postives = 42/88 (47.73%), Query Frame = 0


Query: 27  LFFWVILISAPATLC---------LHL-----PPPSRKLVRFSTASFPHAPPAASPAEFL 86
           LFF+V  +S    L          LHL     PPP RK +R+STA F             
Sbjct: 27  LFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTAPF------------- 86

Query: 87  GRRTAAAAAAAYGDDKRLIHTGPNPLHN 101
             R   +    YGDDKR++HTGPNPLHN
Sbjct: 87  --RGPLSRDDIYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of Tan0019480 vs. NCBI nr
Match: KAG7016766.1 (hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-27
Identity = 75/103 (72.82%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 1   MRVRTRTCSRHGSGATAPAAAAATLLLFFWVILISAPA--TLCLHLPPPSRKLVRFSTAS 60
           MRVRT TCSRHG+GAT   A    L+LF WV+LI APA  TLC  LPP  RKLVRFSTAS
Sbjct: 1   MRVRTVTCSRHGAGATTTTA----LVLFLWVLLILAPATTTLCFQLPPSPRKLVRFSTAS 60

Query: 61  FPHAPPAASPAEFLGRR-TAAAAAAAYGDDKRLIHTGPNPLHN 101
           F HAPPA SPAE L RR ++A AAAAYGD+KRLIHTGPNPLHN
Sbjct: 61  FRHAPPATSPAELLHRRQSSAGAAAAYGDEKRLIHTGPNPLHN 99

[Close]

BLAST of Tan0019480 vs. NCBI nr
Match: KAG6579251.1 (hypothetical protein SDJN03_23699, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 67/96 (69.79%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 1   MRVRTRTCSRHGSGATAPAAAAATLLLFFWVILISAPA--TLCLHLPPPSRKLVRFSTAS 60
           MRVRT TCSRHG+GAT   A    L+LF WV+LI APA  TLC  LPP  RKLVRFSTAS
Sbjct: 29  MRVRTVTCSRHGAGATTTTA----LVLFLWVLLILAPATTTLCFQLPPSPRKLVRFSTAS 88

Query: 61  FPHAPPAASPAEFLGRR-TAAAAAAAYGDDKRLIHT 94
           F HAP A SPAE L RR ++A AAAAYGD+KRLIHT
Sbjct: 89  FRHAPSATSPAELLHRRQSSAGAAAAYGDEKRLIHT 120

[Close]

BLAST of Tan0019480 vs. NCBI nr
Match: XP_011656246.1 (CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical protein Csa_008181 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-21
Identity = 66/105 (62.86%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 1   MRVRTRTCSRHGSGATAPAAAAATLLLFFWVILISAPATLCLHL---PPPSRKLVRFSTA 60
           M   T T SRH    T        L LFFWV+LISAP TLCLHL   PPPSRKL RFSTA
Sbjct: 1   MTPSTGTSSRHRVRPT------TALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTA 60

Query: 61  SFPHAPP--AASPAEFLGRRTAAAAAAAYGDDKRLIHTGPNPLHN 101
            F HAPP    SPAE   R  +AA AAAYG++KRLIHTGPNPLHN
Sbjct: 61  FFHHAPPTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of Tan0019480 vs. NCBI nr
Match: XP_008437694.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325.1 CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 3.1e-20
Identity = 66/105 (62.86%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 1   MRVRTRTCSRHGSGATAPAAAAATLLLFFWVILISAPATLCLHL---PPPSRKLVRFSTA 60
           M  +T T SRH +  T        LLLFFWV+LI AP TLCLHL   PPPSRKL RFSTA
Sbjct: 1   MTPQTGTSSRHRARPT------TALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTA 60

Query: 61  SFPHAPP--AASPAEFLGRRTAAAAAAAYGDDKRLIHTGPNPLHN 101
           SF HAPP    SPAE L RR     A+AY +DKRLIHTGPNPLHN
Sbjct: 61  SFRHAPPTTTTSPAELLDRR---QPASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of Tan0019480 vs. NCBI nr
Match: KAG6601877.1 (CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-18
Identity = 63/98 (64.29%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 7   TCSRHGSGATAPAAAAATLLLFFWVILISAPATLCLHLPPP---SRKLVRFSTASFPHAP 66
           T + H S AT     A   LLFFWV+LI  P TLCLHLPPP   SRKLV FSTAS  H  
Sbjct: 2   TLTTHASAAT----TAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSH-- 61

Query: 67  PAASPAEFLGRR-TAAAAAAAYGDDKRLIHTGPNPLHN 101
            A SP E L  R T+AAAAA Y DDKRLIHTGPNPLHN
Sbjct: 62  -ATSPPELLHHRPTSAAAAAVYTDDKRLIHTGPNPLHN 92

[Close]

BLAST of Tan0019480 vs. ExPASy TrEMBL
Match: A0A0A0KSY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 66/105 (62.86%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 1   MRVRTRTCSRHGSGATAPAAAAATLLLFFWVILISAPATLCLHL---PPPSRKLVRFSTA 60
           M   T T SRH    T        L LFFWV+LISAP TLCLHL   PPPSRKL RFSTA
Sbjct: 1   MTPSTGTSSRHRVRPT------TALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTA 60

Query: 61  SFPHAPP--AASPAEFLGRRTAAAAAAAYGDDKRLIHTGPNPLHN 101
            F HAPP    SPAE   R  +AA AAAYG++KRLIHTGPNPLHN
Sbjct: 61  FFHHAPPTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of Tan0019480 vs. ExPASy TrEMBL
Match: A0A5A7TY55 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00340 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 66/105 (62.86%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 1   MRVRTRTCSRHGSGATAPAAAAATLLLFFWVILISAPATLCLHL---PPPSRKLVRFSTA 60
           M  +T T SRH +  T        LLLFFWV+LI AP TLCLHL   PPPSRKL RFSTA
Sbjct: 1   MTPQTGTSSRHRARPT------TALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTA 60

Query: 61  SFPHAPP--AASPAEFLGRRTAAAAAAAYGDDKRLIHTGPNPLHN 101
           SF HAPP    SPAE L RR     A+AY +DKRLIHTGPNPLHN
Sbjct: 61  SFRHAPPTTTTSPAELLDRR---QPASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of Tan0019480 vs. ExPASy TrEMBL
Match: A0A1S3AUM2 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC103483038 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 66/105 (62.86%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 1   MRVRTRTCSRHGSGATAPAAAAATLLLFFWVILISAPATLCLHL---PPPSRKLVRFSTA 60
           M  +T T SRH +  T        LLLFFWV+LI AP TLCLHL   PPPSRKL RFSTA
Sbjct: 1   MTPQTGTSSRHRARPT------TALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTA 60

Query: 61  SFPHAPP--AASPAEFLGRRTAAAAAAAYGDDKRLIHTGPNPLHN 101
           SF HAPP    SPAE L RR     A+AY +DKRLIHTGPNPLHN
Sbjct: 61  SFRHAPPTTTTSPAELLDRR---QPASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of Tan0019480 vs. ExPASy TrEMBL
Match: W9QTS0 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022931 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.2e-05
Identity = 47/105 (44.76%), Postives = 53/105 (50.48%), Query Frame = 0


Query: 9   SRHGSGATAPAAAAATLLLFFWVILI-----SAPATLCLH--------LPPPSRKLVRFS 68
           SR G G+      AAT   FFWVILI      + A   LH         PP   + V   
Sbjct: 9   SRRGKGSHGGVKVAAT--FFFWVILIFSHLSFSSAAKVLHRNGRLYRQSPPRKARFVDTK 68

Query: 69  TASFPHAPPAASPAEFLGRRTAAAAAAAYGDDKRLIHTGPNPLHN 101
           TASF HAP   SPA  +    A+     YGDDKRL+HTGPNPLHN
Sbjct: 69  TASF-HAP--LSPANSI--NGASDPDILYGDDKRLVHTGPNPLHN 106

[Close]

BLAST of Tan0019480 vs. TAIR 10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 50.8 bits (120), Expect = 7.2e-07
Identity = 35/88 (39.77%), Postives = 42/88 (47.73%), Query Frame = 0


Query: 27  LFFWVILISAPATLC---------LHL-----PPPSRKLVRFSTASFPHAPPAASPAEFL 86
           LFF+V  +S    L          LHL     PPP RK +R+STA F             
Sbjct: 27  LFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTAPF------------- 86

Query: 87  GRRTAAAAAAAYGDDKRLIHTGPNPLHN 101
             R   +    YGDDKR++HTGPNPLHN
Sbjct: 87  --RGPLSRDDIYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of Tan0019480 vs. TAIR 10
Match: AT1G70895.2 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 50.8 bits (120), Expect = 7.2e-07
Identity = 35/88 (39.77%), Postives = 42/88 (47.73%), Query Frame = 0


Query: 27  LFFWVILISAPATLC---------LHL-----PPPSRKLVRFSTASFPHAPPAASPAEFL 86
           LFF+V  +S    L          LHL     PPP RK +R+STA F             
Sbjct: 27  LFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTAPF------------- 86

Query: 87  GRRTAAAAAAAYGDDKRLIHTGPNPLHN 101
             R   +    YGDDKR++HTGPNPLHN
Sbjct: 87  --RGPLSRDDIYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of Tan0019480 vs. TAIR 10
Match: AT2G01505.1 (CLAVATA3/ESR-RELATED 16 )

HSP 1 Score: 41.6 bits (96), Expect = 4.4e-04
Identity = 27/59 (45.76%), Postives = 29/59 (49.15%), Query Frame = 0


Query: 43  HLPPPSRKLVRFSTASFPHAPPAASPAEFLG-RRTAAAAAAAYGDDKRLIHTGPNPLHN 101
           H P   RK   F   +   AP A     F G RR        Y DDKRL+HTGPNPLHN
Sbjct: 47  HYPSLPRKAGHFHEMASFQAPKAT--VSFTGQRREEENRDEVYKDDKRLVHTGPNPLHN 103

The following BLAST results are available for this feature:

BLAST of Tan0019480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9H6	1.0e-05	39.77	CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 P...	[more]

BLAST of Tan0019480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016766.1	1.2e-27	72.82	hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6579251.1	1.3e-21	69.79	hypothetical protein SDJN03_23699, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011656246.1	2.2e-21	62.86	CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical...	[more]
XP_008437694.1	3.1e-20	62.86	PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325...	[more]
KAG6601877.1	1.7e-18	64.29	CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Tan0019480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSY2	1.1e-21	62.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1	[more]
A0A5A7TY55	1.5e-20	62.86	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3AUM2	1.5e-20	62.86	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC1034830...	[more]
W9QTS0	5.2e-05	44.76	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022931 PE=4 SV=1	[more]

BLAST of Tan0019480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70895.1	7.2e-07	39.77	CLAVATA3/ESR-RELATED 17	[more]
AT1G70895.2	7.2e-07	39.77	CLAVATA3/ESR-RELATED 17	[more]
AT2G01505.1	4.4e-04	45.76	CLAVATA3/ESR-RELATED 16	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34545:SF7	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16	coord: 7..100
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	CLAVATA3/ESR (CLE)-RELATED PROTEIN 22	coord: 7..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0019480.1	Tan0019480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development