Tan0019476 (gene) Snake gourd v1

Overview


Name	Tan0019476
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	myrosinase-binding protein 2-like
Location	LG02: 88578872 .. 88579898 (+)
RNA-Seq Expression	Tan0019476
Synteny	Tan0019476

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGTCCTTTGCCATTCTCCCAACAACAAATGACCCCTCGAGCTTATGTCTTAATCTTCTTCTTCTGGTCTCTCCTCACCATCCTCACTCCCGCTCTCGTTTTTCTCTCCGAGAATTCAAAACCGTCATCGGTCTCGTTCGAATCTACAGGTAGATACCCATTTAATAGCATTCTTGTTTCTTGTTTTTTCGTTTTAGTTTCTTATTCTTCTTTTTCCTCTTTTTCGATCAAACTTGAACCTAAAAGAAGGTTGCAGATGTCTTATTCATTAAACTATCATTTTTTTTTCATGTTCACAGCTTCCTCTATCATAAGAAGGAAACATAAAATTATATTTTTGATAATTGTTTATTGTTCAGTAAAAAAAACAATATAAGTTTGATATTAGTTTCTTTCTTCTCTCAAATATTTGATTTAAAAATTAGCTTTATATGAAAATTAATTTTTTAAAATAAAATAATAGAAATTATTGTATTATGGTTAATTTTTCAATATTTATCATTGCATTTTGTGACCAAAAGGCTATAAAATAATGGTTTTATTGATATTTTTGAAAAGTTTTAAAATAAGATAAGAAACAAGAAACTGTTCCATTAAAAAAAAAAAAAACTGAATTTTGTTGTTTTTAAAATTTGTAAATAATTTTTAAAACGTTTCTAAACTATGAGAAATAGAAACTAAAATTTGTCTGATTTTTGTACTATTTTCTGTTTGGCAGATGGGAAAAATGGAGGGATTCAAATGAGTAGAAAAGTTGTGGGATTGACGAGAAAATATCAGATGTTAAAAGTTTTGGCCGAAGAACAGAAAGCACCGGCGGCGATTCCGACACCAATTACAGCACCGGCACCGTCGCTATCGCCGGCTCCGGCTCCGAGCGCCGCCATGCCGTTGCGGAGGTTCATTGCTGGTGCTGGAAAAGTCATATTGACAACGTTGAAGGGCTTGAAAGAAGCACATTAAAAATTTAAGGGTAGGATAGTAATTCAGTCAGTCTCTGAATATTGTCTTATTTCAAAATAAAAA

mRNA sequence

GCTGTCCTTTGCCATTCTCCCAACAACAAATGACCCCTCGAGCTTATGTCTTAATCTTCTTCTTCTGGTCTCTCCTCACCATCCTCACTCCCGCTCTCGTTTTTCTCTCCGAGAATTCAAAACCGTCATCGGTCTCGTTCGAATCTACAGATGGGAAAAATGGAGGGATTCAAATGAGTAGAAAAGTTGTGGGATTGACGAGAAAATATCAGATGTTAAAAGTTTTGGCCGAAGAACAGAAAGCACCGGCGGCGATTCCGACACCAATTACAGCACCGGCACCGTCGCTATCGCCGGCTCCGGCTCCGAGCGCCGCCATGCCGTTGCGGAGGTTCATTGCTGGTGCTGGAAAAGTCATATTGACAACGTTGAAGGGCTTGAAAGAAGCACATTAAAAATTTAAGGGTAGGATAGTAATTCAGTCAGTCTCTGAATATTGTCTTATTTCAAAATAAAAA

Coding sequence (CDS)

ATGACCCCTCGAGCTTATGTCTTAATCTTCTTCTTCTGGTCTCTCCTCACCATCCTCACTCCCGCTCTCGTTTTTCTCTCCGAGAATTCAAAACCGTCATCGGTCTCGTTCGAATCTACAGATGGGAAAAATGGAGGGATTCAAATGAGTAGAAAAGTTGTGGGATTGACGAGAAAATATCAGATGTTAAAAGTTTTGGCCGAAGAACAGAAAGCACCGGCGGCGATTCCGACACCAATTACAGCACCGGCACCGTCGCTATCGCCGGCTCCGGCTCCGAGCGCCGCCATGCCGTTGCGGAGGTTCATTGCTGGTGCTGGAAAAGTCATATTGACAACGTTGAAGGGCTTGAAAGAAGCACATTAA

Protein sequence

MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSSVSFESTDGKNGGIQMSRKVVGLTRKYQMLKVLAEEQKAPAAIPTPITAPAPSLSPAPAPSAAMPLRRFIAGAGKVILTTLKGLKEAH

Homology

[Close]

BLAST of Tan0019476 vs. NCBI nr
Match: XP_038885597.1 (uncharacterized protein LOC120075920 [Benincasa hispida])

HSP 1 Score: 192.2 bits (487), Expect = 2.6e-45
Identity = 105/121 (86.78%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSSVSFESTDGKNGGIQMSRKVVGLTRKY 60
           MTPRAYVLIFFFWSLLTILTPALVFLS+NSKPSS+SF+STDGKNGGI+MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSDNSKPSSLSFKSTDGKNGGIEMSRKVVGLTRKY 60

Query: 61  QMLKVLAEEQKAPAAIPTPITAPAPSLSPAPAPSAAMPLRRFIAGAGKVILTTLKGLKEA 120
           QMLKVLAEEQ APAAIPTPITAPA  LSPAPA  AA+ +R+F+A  GKVILTTLKGLKEA
Sbjct: 61  QMLKVLAEEQTAPAAIPTPITAPA--LSPAPALGAAVSVRKFMADTGKVILTTLKGLKEA 119

Query: 121 H 122
           H
Sbjct: 121 H 119

[Close]

BLAST of Tan0019476 vs. NCBI nr
Match: XP_008444727.1 (PREDICTED: uncharacterized protein LOC103487977 [Cucumis melo] >KAA0065226.1 uncharacterized protein E6C27_scaffold82G005650 [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44
Identity = 101/121 (83.47%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSSVSFESTDGKNGGIQMSRKVVGLTRKY 60
           MTPRAYVLIFFFWSLLTILTPALVFLSENSKPS VSFESTDG+NGGI+MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLVSFESTDGENGGIEMSRKVVGLTRKY 60

Query: 61  QMLKVLAEEQKAPAAIPTPITAPAPSLSPAPAPSAAMPLRRFIAGAGKVILTTLKGLKEA 120
           QMLK+LAEEQ+AP  IPTPITAPAPS +PA AP  A+P+ RF+A A K+IL+TLKGLKEA
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPAPSPAPASAPGNAVPVGRFMANARKLILSTLKGLKEA 120

Query: 121 H 122
           H
Sbjct: 121 H 121

[Close]

BLAST of Tan0019476 vs. NCBI nr
Match: XP_011649628.1 (uncharacterized protein LOC105434646 [Cucumis sativus] >KGN62609.1 hypothetical protein Csa_021820 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 3.2e-43
Identity = 101/120 (84.17%), Postives = 109/120 (90.83%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSSVSFESTDGKNGGIQMSRKVVGLTRKY 60
           MTPRAYVLIFFFWSLLTILTPALVFLSENSKPS +SFESTDGKNGGI+MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLLSFESTDGKNGGIEMSRKVVGLTRKY 60

Query: 61  QMLKVLAEEQKAPAAIPTPITAPAPSLSPAPAPSAAMPLRRFIAGAGKVILTTLKGLKEA 120
           QMLK+LAEEQ+AP  IPTPITAPAPS +PAPA     P+RRF+A AG+VIL TLKGLKEA
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPAPSPTPAPA-----PVRRFMADAGEVILRTLKGLKEA 115

[Close]

BLAST of Tan0019476 vs. NCBI nr
Match: XP_022144206.1 (uncharacterized protein LOC111013954 [Momordica charantia])

HSP 1 Score: 181.0 bits (458), Expect = 6.0e-42
Identity = 98/120 (81.67%), Postives = 103/120 (85.83%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSSVSFESTDGKNGGIQMSRKVVGLTRKY 60
           MTPRAYVLIFFFWS LTILTPALV LSENSK    SF+S DGKNGGI MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60

Query: 61  QMLKVLAEEQKAPAAIPTPITAPAPSLSPAPAPSAAMPLRRFIAGAGKVILTTLKGLKEA 120
           +MLKVLAEEQKAP AIP P+T P PS SPAPAP A  P+RRF+AGAGKVILTTLK LKEA
Sbjct: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKEA 120

[Close]

BLAST of Tan0019476 vs. NCBI nr
Match: XP_023002554.1 (uncharacterized protein LOC111496365 [Cucurbita maxima])

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-40
Identity = 96/117 (82.05%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSSVSFESTDGKNGGIQMSRKVVGLTRKY 60
           MTPRAYVLIFFFWSLLTILTPALVFLSENSK SS+S +S DGK GGIQMSRK+VGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKTSSLSSQSPDGKIGGIQMSRKIVGLTRKY 60

Query: 61  QMLKVLAEEQKAPAAIPTPITAPAPSLSPAPAPSAAMPLRRFIAGAGKVILTTLKGL 118
           +MLKVL EEQ +PAAIPTPITAPAP+ S A  P  A+PLRRF+AGAGKVI+TTLKGL
Sbjct: 61  EMLKVLVEEQTSPAAIPTPITAPAPAPSTALPPGTAVPLRRFMAGAGKVIVTTLKGL 117

[Close]

BLAST of Tan0019476 vs. ExPASy TrEMBL
Match: A0A5A7VFX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005650 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.3e-45
Identity = 101/121 (83.47%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSSVSFESTDGKNGGIQMSRKVVGLTRKY 60
           MTPRAYVLIFFFWSLLTILTPALVFLSENSKPS VSFESTDG+NGGI+MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLVSFESTDGENGGIEMSRKVVGLTRKY 60

Query: 61  QMLKVLAEEQKAPAAIPTPITAPAPSLSPAPAPSAAMPLRRFIAGAGKVILTTLKGLKEA 120
           QMLK+LAEEQ+AP  IPTPITAPAPS +PA AP  A+P+ RF+A A K+IL+TLKGLKEA
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPAPSPAPASAPGNAVPVGRFMANARKLILSTLKGLKEA 120

Query: 121 H 122
           H
Sbjct: 121 H 121

[Close]

BLAST of Tan0019476 vs. ExPASy TrEMBL
Match: A0A1S3BAZ8 (uncharacterized protein LOC103487977 OS=Cucumis melo OX=3656 GN=LOC103487977 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.3e-45
Identity = 101/121 (83.47%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSSVSFESTDGKNGGIQMSRKVVGLTRKY 60
           MTPRAYVLIFFFWSLLTILTPALVFLSENSKPS VSFESTDG+NGGI+MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLVSFESTDGENGGIEMSRKVVGLTRKY 60

Query: 61  QMLKVLAEEQKAPAAIPTPITAPAPSLSPAPAPSAAMPLRRFIAGAGKVILTTLKGLKEA 120
           QMLK+LAEEQ+AP  IPTPITAPAPS +PA AP  A+P+ RF+A A K+IL+TLKGLKEA
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPAPSPAPASAPGNAVPVGRFMANARKLILSTLKGLKEA 120

Query: 121 H 122
           H
Sbjct: 121 H 121

[Close]

BLAST of Tan0019476 vs. ExPASy TrEMBL
Match: A0A0A0LNM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361730 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 101/120 (84.17%), Postives = 109/120 (90.83%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSSVSFESTDGKNGGIQMSRKVVGLTRKY 60
           MTPRAYVLIFFFWSLLTILTPALVFLSENSKPS +SFESTDGKNGGI+MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSLLSFESTDGKNGGIEMSRKVVGLTRKY 60

Query: 61  QMLKVLAEEQKAPAAIPTPITAPAPSLSPAPAPSAAMPLRRFIAGAGKVILTTLKGLKEA 120
           QMLK+LAEEQ+AP  IPTPITAPAPS +PAPA     P+RRF+A AG+VIL TLKGLKEA
Sbjct: 61  QMLKILAEEQRAPPLIPTPITAPAPSPTPAPA-----PVRRFMADAGEVILRTLKGLKEA 115

[Close]

BLAST of Tan0019476 vs. ExPASy TrEMBL
Match: A0A6J1CSM4 (uncharacterized protein LOC111013954 OS=Momordica charantia OX=3673 GN=LOC111013954 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.9e-42
Identity = 98/120 (81.67%), Postives = 103/120 (85.83%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSSVSFESTDGKNGGIQMSRKVVGLTRKY 60
           MTPRAYVLIFFFWS LTILTPALV LSENSK    SF+S DGKNGGI MSRKVVGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSFLTILTPALVLLSENSKSPPPSFDSPDGKNGGINMSRKVVGLTRKY 60

Query: 61  QMLKVLAEEQKAPAAIPTPITAPAPSLSPAPAPSAAMPLRRFIAGAGKVILTTLKGLKEA 120
           +MLKVLAEEQKAP AIP P+T P PS SPAPAP A  P+RRF+AGAGKVILTTLK LKEA
Sbjct: 61  EMLKVLAEEQKAPTAIPIPVTVPVPSPSPAPAPDADFPVRRFMAGAGKVILTTLKVLKEA 120

[Close]

BLAST of Tan0019476 vs. ExPASy TrEMBL
Match: A0A6J1KQS2 (uncharacterized protein LOC111496365 OS=Cucurbita maxima OX=3661 GN=LOC111496365 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.2e-41
Identity = 96/117 (82.05%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKPSSVSFESTDGKNGGIQMSRKVVGLTRKY 60
           MTPRAYVLIFFFWSLLTILTPALVFLSENSK SS+S +S DGK GGIQMSRK+VGLTRKY
Sbjct: 1   MTPRAYVLIFFFWSLLTILTPALVFLSENSKTSSLSSQSPDGKIGGIQMSRKIVGLTRKY 60

Query: 61  QMLKVLAEEQKAPAAIPTPITAPAPSLSPAPAPSAAMPLRRFIAGAGKVILTTLKGL 118
           +MLKVL EEQ +PAAIPTPITAPAP+ S A  P  A+PLRRF+AGAGKVI+TTLKGL
Sbjct: 61  EMLKVLVEEQTSPAAIPTPITAPAPAPSTALPPGTAVPLRRFMAGAGKVIVTTLKGL 117

The following BLAST results are available for this feature:

BLAST of Tan0019476 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0019476 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885597.1	2.6e-45	86.78	uncharacterized protein LOC120075920 [Benincasa hispida]	[more]
XP_008444727.1	1.3e-44	83.47	PREDICTED: uncharacterized protein LOC103487977 [Cucumis melo] >KAA0065226.1 unc...	[more]
XP_011649628.1	3.2e-43	84.17	uncharacterized protein LOC105434646 [Cucumis sativus] >KGN62609.1 hypothetical ...	[more]
XP_022144206.1	6.0e-42	81.67	uncharacterized protein LOC111013954 [Momordica charantia]	[more]
XP_023002554.1	1.5e-40	82.05	uncharacterized protein LOC111496365 [Cucurbita maxima]	[more]

BLAST of Tan0019476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFX0	6.3e-45	83.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BAZ8	6.3e-45	83.47	uncharacterized protein LOC103487977 OS=Cucumis melo OX=3656 GN=LOC103487977 PE=...	[more]
A0A0A0LNM8	1.5e-43	84.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361730 PE=4 SV=1	[more]
A0A6J1CSM4	2.9e-42	81.67	uncharacterized protein LOC111013954 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1KQS2	7.2e-41	82.05	uncharacterized protein LOC111496365 OS=Cucurbita maxima OX=3661 GN=LOC111496365...	[more]

BLAST of Tan0019476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38396	TRANSMEMBRANE PROTEIN	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0019476.1	Tan0019476.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane