Tan0019472 (gene) Snake gourd v1

Overview
NameTan0019472
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG09: 66879805 .. 66880122 (-)
RNA-Seq ExpressionTan0019472
SyntenyTan0019472
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTAAAGTTAGCACTTGTATTCCTAATTTTCATAGCTATTATTTTATCACCACCAACGATGGCCCAAACCACGGCGGCATTAGCAGCAGCACCTAGTACTCCATCATCATTAATAGAAGATATCTCCTTCAAGAGATGTGCACCCTTGATTTTAGAGGCGACCATGTGTGTGGCAGATATCATCAAGTTTCCAATCTCTTCTCATCCTGCTTGTTGCAAAGCCTTTTTTAAGATCAACGATTGTGACCCCAACTTTCTCAAACACATTTCTCCTGCTCATTTGAATTTGATTAAGAAGATTTGTGATTTTTGA

mRNA sequence

ATGGCCGTAAAGTTAGCACTTGTATTCCTAATTTTCATAGCTATTATTTTATCACCACCAACGATGGCCCAAACCACGGCGGCATTAGCAGCAGCACCTAGTACTCCATCATCATTAATAGAAGATATCTCCTTCAAGAGATGTGCACCCTTGATTTTAGAGGCGACCATGTGTGTGGCAGATATCATCAAGTTTCCAATCTCTTCTCATCCTGCTTGTTGCAAAGCCTTTTTTAAGATCAACGATTGTGACCCCAACTTTCTCAAACACATTTCTCCTGCTCATTTGAATTTGATTAAGAAGATTTGTGATTTTTGA

Coding sequence (CDS)

ATGGCCGTAAAGTTAGCACTTGTATTCCTAATTTTCATAGCTATTATTTTATCACCACCAACGATGGCCCAAACCACGGCGGCATTAGCAGCAGCACCTAGTACTCCATCATCATTAATAGAAGATATCTCCTTCAAGAGATGTGCACCCTTGATTTTAGAGGCGACCATGTGTGTGGCAGATATCATCAAGTTTCCAATCTCTTCTCATCCTGCTTGTTGCAAAGCCTTTTTTAAGATCAACGATTGTGACCCCAACTTTCTCAAACACATTTCTCCTGCTCATTTGAATTTGATTAAGAAGATTTGTGATTTTTGA

Protein sequence

MAVKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEATMCVADIIKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKICDF
Homology
BLAST of Tan0019472 vs. NCBI nr
Match: KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 55/102 (53.92%), Postives = 71/102 (69.61%), Query Frame = 0

Query: 2   AVKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEATMCVAD 61
           A+KL LVFL+ IAI+    TMA TTAA A +PS P    ++  F +CAP ILEAT+CV D
Sbjct: 10  AMKLVLVFLVCIAILAPSTTMADTTAA-APSPSVP----QNFPFLKCAPFILEATLCVTD 69

Query: 62  IIKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 104
           +IKFPI+ HP+CCKA  K+NDC P   + I    +++IKKIC
Sbjct: 70  VIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKIC 106

BLAST of Tan0019472 vs. NCBI nr
Match: TYK10334.1 (hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 7.6e-17
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 0

Query: 3   VKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEATMCVADI 62
           +KL LVFL+ IAI+    TMA TTAA A +PS P    ++  F +CAP ILEAT+CV  +
Sbjct: 1   MKLVLVFLVCIAILAPSTTMAGTTAA-APSPSVP----QNFPFLKCAPFILEATLCVTGV 60

Query: 63  IKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 104
           IKFPI+ HP+CCKA  K+ DC P+  + I  + +N+IKK C
Sbjct: 61  IKFPIAPHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTC 96

BLAST of Tan0019472 vs. NCBI nr
Match: KAA0050072.1 (hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK10333.1 hypothetical protein E5676_scaffold367G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 5.4e-15
Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = 0

Query: 3   VKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEATMCVADI 62
           +K A VF++ IAI+ +  T  +T ++    P    S+ +++SF  CAP I + T+C+ D+
Sbjct: 11  IKSASVFIVSIAILAASVTAGRTVSSTTLDP----SMSQNLSFFSCAPFIFDVTLCLVDV 70

Query: 63  IKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 104
            KFPIS HP CCKA FK+NDC P   + I PA +++IKKIC
Sbjct: 71  FKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKIC 107

BLAST of Tan0019472 vs. NCBI nr
Match: KAE8653023.1 (hypothetical protein Csa_023561, partial [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 9.3e-15
Identity = 44/101 (43.56%), Postives = 68/101 (67.33%), Query Frame = 0

Query: 3   VKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEATMCVADI 62
           +KLALVF++ IAI+ +  T  +T   + ++ +   S+ +D+SF  C P IL+AT+C+ D+
Sbjct: 8   MKLALVFIVSIAILAASATAGRT---VVSSTTLDPSISQDLSFFSCTPFILDATLCLVDV 67

Query: 63  IKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 104
            KFPI+ HP CCKA FK+NDC P   + I  A ++++K IC
Sbjct: 68  FKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDVVKNIC 105

BLAST of Tan0019472 vs. NCBI nr
Match: TYK10344.1 (hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 0

Query: 3   VKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLI-EDISFKRCAPLILEATMCVAD 62
           ++LALVFL+ I +IL+P   A T   +A APS    L+ +D SF  CAP ILEATMC+ D
Sbjct: 12  IRLALVFLVCI-VILAPSVTAHT---MAEAPSPLLVLLDQDSSFSNCAPFILEATMCMVD 71

Query: 63  IIKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 104
           +IK P++ HP+CCKA   +NDC P   +HI    +++IKKIC
Sbjct: 72  VIKLPVAPHPSCCKAISDLNDCAPEIYQHI--PGMDVIKKIC 107

BLAST of Tan0019472 vs. ExPASy TrEMBL
Match: A0A5A7U9A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00160 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.7e-19
Identity = 55/102 (53.92%), Postives = 71/102 (69.61%), Query Frame = 0

Query: 2   AVKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEATMCVAD 61
           A+KL LVFL+ IAI+    TMA TTAA A +PS P    ++  F +CAP ILEAT+CV D
Sbjct: 10  AMKLVLVFLVCIAILAPSTTMADTTAA-APSPSVP----QNFPFLKCAPFILEATLCVTD 69

Query: 62  IIKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 104
           +IKFPI+ HP+CCKA  K+NDC P   + I    +++IKKIC
Sbjct: 70  VIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKIC 106

BLAST of Tan0019472 vs. ExPASy TrEMBL
Match: A0A5D3CGK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00080 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.7e-17
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 0

Query: 3   VKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEATMCVADI 62
           +KL LVFL+ IAI+    TMA TTAA A +PS P    ++  F +CAP ILEAT+CV  +
Sbjct: 1   MKLVLVFLVCIAILAPSTTMAGTTAA-APSPSVP----QNFPFLKCAPFILEATLCVTGV 60

Query: 63  IKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 104
           IKFPI+ HP+CCKA  K+ DC P+  + I  + +N+IKK C
Sbjct: 61  IKFPIAPHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTC 96

BLAST of Tan0019472 vs. ExPASy TrEMBL
Match: A0A0A0LTD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 0

Query: 3   VKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLI--EDISFKRCAPLILEATMCVA 62
           ++LA+VFL+ I +IL+P   A+T   +A APS    L   +D SF  CAP ILEATMCV 
Sbjct: 12  IRLAIVFLVCI-VILAPSVTART---MAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVV 71

Query: 63  DIIKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 104
           D+IK P++SHP+CCKA   +NDC P   +HI    +++IKKIC
Sbjct: 72  DVIKLPVASHPSCCKAISDLNDCAPQIYQHI--PDMDVIKKIC 108

BLAST of Tan0019472 vs. ExPASy TrEMBL
Match: A0A5A7U2L3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00060 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.6e-15
Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = 0

Query: 3   VKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLIEDISFKRCAPLILEATMCVADI 62
           +K A VF++ IAI+ +  T  +T ++    P    S+ +++SF  CAP I + T+C+ D+
Sbjct: 11  IKSASVFIVSIAILAASVTAGRTVSSTTLDP----SMSQNLSFFSCAPFIFDVTLCLVDV 70

Query: 63  IKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 104
            KFPIS HP CCKA FK+NDC P   + I PA +++IKKIC
Sbjct: 71  FKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKIC 107

BLAST of Tan0019472 vs. ExPASy TrEMBL
Match: A0A5D3CGL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00200 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 0

Query: 3   VKLALVFLIFIAIILSPPTMAQTTAALAAAPSTPSSLI-EDISFKRCAPLILEATMCVAD 62
           ++LALVFL+ I +IL+P   A T   +A APS    L+ +D SF  CAP ILEATMC+ D
Sbjct: 12  IRLALVFLVCI-VILAPSVTAHT---MAEAPSPLLVLLDQDSSFSNCAPFILEATMCMVD 71

Query: 63  IIKFPISSHPACCKAFFKINDCDPNFLKHISPAHLNLIKKIC 104
           +IK P++ HP+CCKA   +NDC P   +HI    +++IKKIC
Sbjct: 72  VIKLPVAPHPSCCKAISDLNDCAPEIYQHI--PGMDVIKKIC 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0050069.11.4e-1853.92hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034... [more]
TYK10334.17.6e-1751.49hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa][more]
KAA0050072.15.4e-1544.55hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK1033... [more]
KAE8653023.19.3e-1543.56hypothetical protein Csa_023561, partial [Cucumis sativus][more]
TYK10344.12.1e-1450.00hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5A7U9A16.7e-1953.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CGK93.7e-1751.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LTD62.0e-1550.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1[more]
A0A5A7U2L32.6e-1544.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CGL71.0e-1450.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008502Prolamin-like domainPFAMPF05617Prolamin_likecoord: 48..104
e-value: 3.3E-4
score: 20.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0019472.1Tan0019472.1mRNA