Tan0019431 (gene) Snake gourd v1

Overview


Name	Tan0019431
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein LITTLE ZIPPER 4
Location	LG08: 69125227 .. 69125713 (-)
RNA-Seq Expression	Tan0019431
Synteny	Tan0019431

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGCTAAATTCAGATTTGTACTTGCAAAACTGTTACATAATGAAGGAAAATGAGAGACTGAGGAAGAAAGCTCAGATTTTGAACCAAGAAAATCAAGCACTTCTTTCAGAACTGAAGCAGAAATTGTCAAAAGGAAATGCTTCAAAATCAATTCCTGATCTTAATCTCTCCTCTGCTTCTGTTACAAATCCTTCTAATTCTTCCAATTGATTATATATTATCAATGGAACAAGAAGAAGAAGAAGATGATGATGAAGATGATCATGATATCATGACCCCACTAAAGTTAAATCTTTTTTTTTTCTTTTTATTTTGTTTTCATTTTTTGTGAATTACCATAGCCAACAGTAGCAAGTAGTTTGGGTTTTCAGTTATTATATAGGACAGTCTGGTAGCTTTAGCATCTTCTTTCTCTCTCTCTCTCTATCAGTTTTTTTGTTTTTTTGGTTAATTTCTTATATCTTCTTTTTTTGGGGGGGTT

mRNA sequence

ATGGAGAGGCTAAATTCAGATTTGTACTTGCAAAACTGTTACATAATGAAGGAAAATGAGAGACTGAGGAAGAAAGCTCAGATTTTGAACCAAGAAAATCAAGCACTTCTTTCAGAACTGAAGCAGAAATTGTCAAAAGGAAATGCTTCAAAATCAATTCCTGATCTTAATCTCTCCTCTGCTTCTGTTACAAATCCTTCTAATTCTTCCAATTGATTATATATTATCAATGGAACAAGAAGAAGAAGAAGATGATGATGAAGATGATCATGATATCATGACCCCACTAAAGTTAAATCTTTTTTTTTTCTTTTTATTTTGTTTTCATTTTTTGTGAATTACCATAGCCAACAGTAGCAAGTAGTTTGGGTTTTCAGTTATTATATAGGACAGTCTGGTAGCTTTAGCATCTTCTTTCTCTCTCTCTCTCTATCAGTTTTTTTGTTTTTTTGGTTAATTTCTTATATCTTCTTTTTTTGGGGGGGTT

Coding sequence (CDS)

ATGGAGAGGCTAAATTCAGATTTGTACTTGCAAAACTGTTACATAATGAAGGAAAATGAGAGACTGAGGAAGAAAGCTCAGATTTTGAACCAAGAAAATCAAGCACTTCTTTCAGAACTGAAGCAGAAATTGTCAAAAGGAAATGCTTCAAAATCAATTCCTGATCTTAATCTCTCCTCTGCTTCTGTTACAAATCCTTCTAATTCTTCCAATTGA

Protein sequence

MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGNASKSIPDLNLSSASVTNPSNSSN

Homology

[Close]

BLAST of Tan0019431 vs. ExPASy Swiss-Prot
Match: Q56WL5 (Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana OX=3702 GN=ZPR4 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-13
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSK-GNASKSIPDLNLS 60
          MERLNS LYLQNCYI+KENERLRKKAQILNQENQ LL ELKQKLSK  N+S S    N +
Sbjct: 1  MERLNSKLYLQNCYIIKENERLRKKAQILNQENQQLLFELKQKLSKTKNSSGSNQGNNNN 60

Query: 61 SASVTNPSNSS 71
          + ++++ S++S
Sbjct: 61 NNNLSSSSSAS 71

[Close]

BLAST of Tan0019431 vs. ExPASy Swiss-Prot
Match: Q9LXI8 (Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana OX=3702 GN=ZPR3 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.0e-12
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGNASKSIPDLNLSS 60
          MERLNS L+++NCYIMKENERLRKKA++LNQENQ LL +LKQKLSK   S +  + +  S
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSNNGSNNDNKS 60

Query: 61 ASVTNPS 68
          +S +  S
Sbjct: 61 SSASGQS 67

[Close]

BLAST of Tan0019431 vs. NCBI nr
Match: XP_022144704.1 (protein LITTLE ZIPPER 4 [Momordica charantia])

HSP 1 Score: 118.6 bits (296), Expect = 2.2e-23
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGN-----ASKSIPD 60
          MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKG+     +SKSIPD
Sbjct: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGSSKGNASSKSIPD 60

Query: 61 LNLSSASVTNPSNSSN 72
          LNLSSASVTNPSNS+N
Sbjct: 61 LNLSSASVTNPSNSTN 76

[Close]

BLAST of Tan0019431 vs. NCBI nr
Match: KAG7028099.1 (Protein LITTLE ZIPPER 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.4 bits (285), Expect = 4.1e-22
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGNASKSIPDLNLSS 60
          MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKG  +KSIPDLNL S
Sbjct: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGK-TKSIPDLNLCS 60

Query: 61 ASVTNPSNSS 71
          AS+TNPSNSS
Sbjct: 61 ASLTNPSNSS 69

[Close]

BLAST of Tan0019431 vs. NCBI nr
Match: XP_008442826.1 (PREDICTED: protein LITTLE ZIPPER 4 [Cucumis melo] >XP_008442827.1 PREDICTED: protein LITTLE ZIPPER 4 [Cucumis melo] >XP_011652008.1 protein LITTLE ZIPPER 4 [Cucumis sativus] >XP_038905261.1 protein LITTLE ZIPPER 4 [Benincasa hispida] >XP_038905262.1 protein LITTLE ZIPPER 4 [Benincasa hispida] >XP_038905263.1 protein LITTLE ZIPPER 4 [Benincasa hispida] >KGN59119.1 hypothetical protein Csa_001986 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 4.5e-21
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKG----NASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG    NASKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSASVTNPSNSSN 72
          NLSSA   NPSNSSN
Sbjct: 61 NLSSA---NPSNSSN 72

[Close]

BLAST of Tan0019431 vs. NCBI nr
Match: XP_022935644.1 (protein LITTLE ZIPPER 4 [Cucurbita moschata] >XP_022983169.1 protein LITTLE ZIPPER 4 [Cucurbita maxima] >XP_023526116.1 protein LITTLE ZIPPER 4 [Cucurbita pepo subsp. pepo] >KAG7017444.1 Protein LITTLE ZIPPER 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKG----NASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG    N+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60

Query: 61 NLSSASVTNPSNSSN 72
          NLSSA   NPSNSSN
Sbjct: 61 NLSSA---NPSNSSN 72

[Close]

BLAST of Tan0019431 vs. NCBI nr
Match: KAF3441681.1 (hypothetical protein FNV43_RR15596 [Rhamnella rubrinervis])

HSP 1 Score: 107.5 bits (267), Expect = 5.0e-20
Identity = 63/75 (84.00%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKL----SKGNASKSIPDL 60
          MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKL    SK NA+KSIPDL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLTKTNSKSNATKSIPDL 60

Query: 61 NLSSASVTNPSNSSN 72
          NLSS S  NPS SSN
Sbjct: 61 NLSSTSNQNPSGSSN 75

[Close]

BLAST of Tan0019431 vs. ExPASy TrEMBL
Match: A0A6J1CT31 (protein LITTLE ZIPPER 4 OS=Momordica charantia OX=3673 GN=LOC111014328 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-23
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGN-----ASKSIPD 60
          MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKG+     +SKSIPD
Sbjct: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGSSKGNASSKSIPD 60

Query: 61 LNLSSASVTNPSNSSN 72
          LNLSSASVTNPSNS+N
Sbjct: 61 LNLSSASVTNPSNSTN 76

[Close]

BLAST of Tan0019431 vs. ExPASy TrEMBL
Match: A0A1S3B7E3 (protein LITTLE ZIPPER 4 OS=Cucumis melo OX=3656 GN=LOC103486597 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-21
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKG----NASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG    NASKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSASVTNPSNSSN 72
          NLSSA   NPSNSSN
Sbjct: 61 NLSSA---NPSNSSN 72

[Close]

BLAST of Tan0019431 vs. ExPASy TrEMBL
Match: A0A0A0LE03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776310 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-21
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKG----NASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG    NASKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSASVTNPSNSSN 72
          NLSSA   NPSNSSN
Sbjct: 61 NLSSA---NPSNSSN 72

[Close]

BLAST of Tan0019431 vs. ExPASy TrEMBL
Match: A0A6J1J6J7 (protein LITTLE ZIPPER 4 OS=Cucurbita maxima OX=3661 GN=LOC111481803 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.8e-21
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKG----NASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG    N+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60

Query: 61 NLSSASVTNPSNSSN 72
          NLSSA   NPSNSSN
Sbjct: 61 NLSSA---NPSNSSN 72

[Close]

BLAST of Tan0019431 vs. ExPASy TrEMBL
Match: A0A6J1F606 (protein LITTLE ZIPPER 4 OS=Cucurbita moschata OX=3662 GN=LOC111442436 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.8e-21
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKG----NASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG    N+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60

Query: 61 NLSSASVTNPSNSSN 72
          NLSSA   NPSNSSN
Sbjct: 61 NLSSA---NPSNSSN 72

[Close]

BLAST of Tan0019431 vs. TAIR 10
Match: AT3G52770.1 (protein binding )

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-13
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGNASKSIPDLNLSS 60
          MERLNS L+++NCYIMKENERLRKKA++LNQENQ LL +LKQKLSK   S +  + +  S
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSNNGSNNDNKS 60

Query: 61 ASVTNPS 68
          +S +  S
Sbjct: 61 SSASGQS 67

[Close]

BLAST of Tan0019431 vs. TAIR 10
Match: AT2G45450.1 (protein binding )

HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04
Identity = 22/43 (51.16%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 1   MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQK 44
           ME +N  LY++N  I++ENE+L+KKA +L+QEN+ L S L+ K
Sbjct: 87  MEMINLKLYVENQNIIRENEKLKKKALLLHQENKTLFSLLQTK 129

The following BLAST results are available for this feature:

BLAST of Tan0019431 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56WL5	1.2e-13	67.61	Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana OX=3702 GN=ZPR4 PE=1 SV=1	[more]
Q9LXI8	3.0e-12	61.19	Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana OX=3702 GN=ZPR3 PE=1 SV=1	[more]

BLAST of Tan0019431 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144704.1	2.2e-23	89.47	protein LITTLE ZIPPER 4 [Momordica charantia]	[more]
KAG7028099.1	4.1e-22	92.86	Protein LITTLE ZIPPER 4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008442826.1	4.5e-21	88.00	PREDICTED: protein LITTLE ZIPPER 4 [Cucumis melo] >XP_008442827.1 PREDICTED: pro...	[more]
XP_022935644.1	1.0e-20	86.67	protein LITTLE ZIPPER 4 [Cucurbita moschata] >XP_022983169.1 protein LITTLE ZIPP...	[more]
KAF3441681.1	5.0e-20	84.00	hypothetical protein FNV43_RR15596 [Rhamnella rubrinervis]	[more]

BLAST of Tan0019431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CT31	1.0e-23	89.47	protein LITTLE ZIPPER 4 OS=Momordica charantia OX=3673 GN=LOC111014328 PE=4 SV=1	[more]
A0A1S3B7E3	2.2e-21	88.00	protein LITTLE ZIPPER 4 OS=Cucumis melo OX=3656 GN=LOC103486597 PE=4 SV=1	[more]
A0A0A0LE03	2.2e-21	88.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776310 PE=4 SV=1	[more]
A0A6J1J6J7	4.8e-21	86.67	protein LITTLE ZIPPER 4 OS=Cucurbita maxima OX=3661 GN=LOC111481803 PE=4 SV=1	[more]
A0A6J1F606	4.8e-21	86.67	protein LITTLE ZIPPER 4 OS=Cucurbita moschata OX=3662 GN=LOC111442436 PE=4 SV=1	[more]

BLAST of Tan0019431 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52770.1	2.2e-13	61.19	protein binding	[more]
AT2G45450.1	1.4e-04	51.16	protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..71
None	No IPR available	PANTHER	PTHR33601:SF1	PROTEIN LITTLE ZIPPER 4	coord: 1..70
IPR039312	Protein LITTLE ZIPPER	PANTHER	PTHR33601	PROTEIN LITTLE ZIPPER 4	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0019431.1	Tan0019431.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane