Tan0019310 (gene) Snake gourd v1

Overview


Name	Tan0019310
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG09: 66908832 .. 66909158 (-)
RNA-Seq Expression	Tan0019310
Synteny	Tan0019310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAAAGTTGGCACTTGTATTCATAGTCTGCATTATTGTCATTTTAGCACCATCAGCGACGGCCCGCAAGATGGCTGTGGCGGAGGCGCCTGATCCGTTTGTGACAGAGGATTTCTCATTGTTGGGCTGCACATCATTTATTCCAGAGGCAACCAAATGTGTGATTGATGTGTTCAAGAATGCAATTGCTCCACATCCTTCTTGTTGTCGAGCCATTTCAAAGCTCAATGATTGTTCCTCCGATTTTCTTAAAGACATTCCTTCCGTTGATATGGTTTTGATTAAGAGCATTTGTGCATTGTGGGGCGTTTCAATTTCTTAG

mRNA sequence

ATGGCGCCAAAGTTGGCACTTGTATTCATAGTCTGCATTATTGTCATTTTAGCACCATCAGCGACGGCCCGCAAGATGGCTGTGGCGGAGGCGCCTGATCCGTTTGTGACAGAGGATTTCTCATTGTTGGGCTGCACATCATTTATTCCAGAGGCAACCAAATGTGTGATTGATGTGTTCAAGAATGCAATTGCTCCACATCCTTCTTGTTGTCGAGCCATTTCAAAGCTCAATGATTGTTCCTCCGATTTTCTTAAAGACATTCCTTCCGTTGATATGGTTTTGATTAAGAGCATTTGTGCATTGTGGGGCGTTTCAATTTCTTAG

Coding sequence (CDS)

ATGGCGCCAAAGTTGGCACTTGTATTCATAGTCTGCATTATTGTCATTTTAGCACCATCAGCGACGGCCCGCAAGATGGCTGTGGCGGAGGCGCCTGATCCGTTTGTGACAGAGGATTTCTCATTGTTGGGCTGCACATCATTTATTCCAGAGGCAACCAAATGTGTGATTGATGTGTTCAAGAATGCAATTGCTCCACATCCTTCTTGTTGTCGAGCCATTTCAAAGCTCAATGATTGTTCCTCCGATTTTCTTAAAGACATTCCTTCCGTTGATATGGTTTTGATTAAGAGCATTTGTGCATTGTGGGGCGTTTCAATTTCTTAG

Protein sequence

MAPKLALVFIVCIIVILAPSATARKMAVAEAPDPFVTEDFSLLGCTSFIPEATKCVIDVFKNAIAPHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGVSIS

Homology

[Close]

BLAST of Tan0019310 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 1.6e-30
Identity = 73/102 (71.57%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 4   KLALVFIVCIIVILAPSATARKMAVAEAPDPFVTEDFSLLGCTSFIPEATKCVIDVFKNA 63
           KL LVF+VC I ILA S  A   A+A A DPF  E+FSLLGCTSFI EAT C++DV KNA
Sbjct: 5   KLPLVFLVC-IAILAVSGMAHTGALAPA-DPFTAEEFSLLGCTSFISEATNCMVDVMKNA 64

Query: 64  IAPHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGV 106
           +APHPSCC+A SKLNDCSS+FLK IPS DM+LIK ICALWGV
Sbjct: 65  VAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Tan0019310 vs. NCBI nr
Match: TYK10330.1 (hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 3.1e-29
Identity = 72/102 (70.59%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 4   KLALVFIVCIIVILAPSATARKMAVAEAPDPFVTEDFSLLGCTSFIPEATKCVIDVFKNA 63
           KL LVF VC + ILA S  A   A A + DPF  E+ SLLGCTSFI EATKCVIDV KNA
Sbjct: 5   KLPLVFFVC-MAILAVSGIAHTGAAAPS-DPFTAEELSLLGCTSFISEATKCVIDVMKNA 64

Query: 64  IAPHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGV 106
           +APHPSCC+A SKLNDCS +FLK IPS DM+LIK ICALWGV
Sbjct: 65  VAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Tan0019310 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 4.0e-29
Identity = 73/105 (69.52%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 4   KLALVFIVCIIVILAPSATARKMAVAEAPDPFVTEDFSLLGCTSFIPEATKCVIDVFKNA 63
           KL LV +VC I ILA S TAR   VA A     +EDFSL  C SF+P+ATKCVIDV KNA
Sbjct: 8   KLPLVLLVC-IAILASSVTARPTIVAAATP--TSEDFSLFPCISFVPKATKCVIDVLKNA 67

Query: 64  IAPHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGVSIS 109
           +APHPSCC AIS+L+DCSS FLKDIPS DM+L+KSICA WGVSIS
Sbjct: 68  VAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]

BLAST of Tan0019310 vs. NCBI nr
Match: KAA0050078.1 (hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 6.8e-29
Identity = 72/102 (70.59%), Postives = 78/102 (76.47%), Query Frame = 0


Query: 4   KLALVFIVCIIVILAPSATARKMAVAEAPDPFVTEDFSLLGCTSFIPEATKCVIDVFKNA 63
           KL LVF VC + ILA S  A   A A + DPF  E  SLLGCTSFI EATKCVIDV KNA
Sbjct: 5   KLPLVFFVC-MAILAVSGIAHTGAAAPS-DPFTAEKLSLLGCTSFISEATKCVIDVMKNA 64

Query: 64  IAPHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGV 106
           +APHPSCC+A SKLNDCS +FLK IPS DM+LIK ICALWGV
Sbjct: 65  VAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Tan0019310 vs. NCBI nr
Match: KAG6589812.1 (hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-27
Identity = 65/105 (61.90%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 4   KLALVFIVCIIVILAPSATARKMAVAEAPDPFVTEDFSLLGCTSFIPEATKCVIDVFKNA 63
           KLA   +VCI ++ +P         A APDPF  E FSL GCTS + E TKCV+DV K A
Sbjct: 2   KLAAACLVCIAILASP---------AMAPDPFAAEGFSLFGCTSAVSEMTKCVVDVMKQA 61

Query: 64  IAPHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGVSIS 109
           +APHPSCCRAISKLN CSS FLKD+PS DM LIK++CALWGV +S
Sbjct: 62  VAPHPSCCRAISKLNRCSSVFLKDVPSADMFLIKTVCALWGVPVS 97

[Close]

BLAST of Tan0019310 vs. ExPASy TrEMBL
Match: A0A5D3CG41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00010 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.5e-29
Identity = 72/102 (70.59%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 4   KLALVFIVCIIVILAPSATARKMAVAEAPDPFVTEDFSLLGCTSFIPEATKCVIDVFKNA 63
           KL LVF VC + ILA S  A   A A + DPF  E+ SLLGCTSFI EATKCVIDV KNA
Sbjct: 5   KLPLVFFVC-MAILAVSGIAHTGAAAPS-DPFTAEELSLLGCTSFISEATKCVIDVMKNA 64

Query: 64  IAPHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGV 106
           +APHPSCC+A SKLNDCS +FLK IPS DM+LIK ICALWGV
Sbjct: 65  VAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Tan0019310 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.9e-29
Identity = 73/105 (69.52%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 4   KLALVFIVCIIVILAPSATARKMAVAEAPDPFVTEDFSLLGCTSFIPEATKCVIDVFKNA 63
           KL LV +VC I ILA S TAR   VA A     +EDFSL  C SF+P+ATKCVIDV KNA
Sbjct: 8   KLPLVLLVC-IAILASSVTARPTIVAAATP--TSEDFSLFPCISFVPKATKCVIDVLKNA 67

Query: 64  IAPHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGVSIS 109
           +APHPSCC AIS+L+DCSS FLKDIPS DM+L+KSICA WGVSIS
Sbjct: 68  VAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]

BLAST of Tan0019310 vs. ExPASy TrEMBL
Match: A0A5A7U483 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00620 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.3e-29
Identity = 72/102 (70.59%), Postives = 78/102 (76.47%), Query Frame = 0


Query: 4   KLALVFIVCIIVILAPSATARKMAVAEAPDPFVTEDFSLLGCTSFIPEATKCVIDVFKNA 63
           KL LVF VC + ILA S  A   A A + DPF  E  SLLGCTSFI EATKCVIDV KNA
Sbjct: 5   KLPLVFFVC-MAILAVSGIAHTGAAAPS-DPFTAEKLSLLGCTSFISEATKCVIDVMKNA 64

Query: 64  IAPHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGV 106
           +APHPSCC+A SKLNDCS +FLK IPS DM+LIK ICALWGV
Sbjct: 65  VAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Tan0019310 vs. ExPASy TrEMBL
Match: A0A5A7U2D8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00440 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.4e-27
Identity = 70/105 (66.67%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 4   KLALVFIVCIIVILAPSATARKMAVAEAPDPFVTEDFSLLGCTSFIPEATKCVIDVFKNA 63
           KL L+ +VC I ILA S TAR   VA A    +++DFSL  C SF+P ATK VIDV KNA
Sbjct: 8   KLPLILLVC-IAILASSVTARPTIVAAATP--ISKDFSLFPCISFVPMATKRVIDVLKNA 67

Query: 64  IAPHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGVSIS 109
           +APHPSCC AIS+L+DCSS FLKDIPS DM+L+KSICA WGVSIS
Sbjct: 68  VAPHPSCCEAISQLHDCSSQFLKDIPSDDMILVKSICASWGVSIS 109

[Close]

BLAST of Tan0019310 vs. ExPASy TrEMBL
Match: A0A5A7U8Y3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00460 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.1e-27
Identity = 69/105 (65.71%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 4   KLALVFIVCIIVILAPSATARKMAVAEAPDPFVTEDFSLLGCTSFIPEATKCVIDVFKNA 63
           KL L  + CI  ILA S  AR + VA A       D SL  C SF+P+AT+CVIDV KNA
Sbjct: 7   KLPLALLFCIF-ILASSVMARPVTVAAAAP---EGDISLFPCKSFVPKATECVIDVLKNA 66

Query: 64  IAPHPSCCRAISKLNDCSSDFLKDIPSVDMVLIKSICALWGVSIS 109
           +APHPSCC+AIS+L+DCSS FLKDIPSVDM+L+KSICALWGVSIS
Sbjct: 67  VAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

The following BLAST results are available for this feature:

BLAST of Tan0019310 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0019310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653021.1	1.6e-30	71.57	hypothetical protein Csa_004567 [Cucumis sativus]	[more]
TYK10330.1	3.1e-29	70.59	hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa]	[more]
TYK10345.1	4.0e-29	69.52	hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]	[more]
KAA0050078.1	6.8e-29	70.59	hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa]	[more]
KAG6589812.1	2.2e-27	61.90	hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0019310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CG41	1.5e-29	70.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CFS6	1.9e-29	69.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U483	3.3e-29	70.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U2D8	2.4e-27	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U8Y3	3.1e-27	65.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Tan0019310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0019310.1	Tan0019310.1	mRNA