Tan0019308 (gene) Snake gourd v1

Overview
NameTan0019308
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
LocationLG08: 66526250 .. 66526633 (-)
RNA-Seq ExpressionTan0019308
SyntenyTan0019308
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGTGACCAAAAAGGATACGTGCAACATTGAGGCAAGTCGAAGCTTGTGGAGGAAGGAAGACACATGGGTGCACATTTTTGTCGATGCAGCTTGTGATGAGTCTAAGGGTCGAATAGGTGTTGGGGTCGATATTCGAGATCCTAATGGACGATTGTTGGCAGCTATGACTAATGTTCATGACATCTTTATCAACCCGGCATGTTCAGAAGCATTGCCCATTTTCGATGGTTTGCAGCTAGTAGAGCGTTTAGGATACTCTAAGCTACATATTTTTTCGGACTCATTGACCAATGTGGCTATGATTAATGGGCTACTGAATACAACATCTGATATTCACAACTACGTTAGTGATGTTTTTATCTCTACGCCGGAAGTTTGA

mRNA sequence

ATGAATGTGACCAAAAAGGATACGTGCAACATTGAGGCAAGTCGAAGCTTGTGGAGGAAGGAAGACACATGGGTGCACATTTTTGTCGATGCAGCTTGTGATGAGTCTAAGGGTCGAATAGGTGTTGGGGTCGATATTCGAGATCCTAATGGACGATTGTTGGCAGCTATGACTAATGTTCATGACATCTTTATCAACCCGGCATGTTCAGAAGCATTGCCCATTTTCGATGGTTTGCAGCTAGTAGAGCGTTTAGGATACTCTAAGCTACATATTTTTTCGGACTCATTGACCAATGTGGCTATGATTAATGGGCTACTGAATACAACATCTGATATTCACAACTACGTTAGTGATGTTTTTATCTCTACGCCGGAAGTTTGA

Coding sequence (CDS)

ATGAATGTGACCAAAAAGGATACGTGCAACATTGAGGCAAGTCGAAGCTTGTGGAGGAAGGAAGACACATGGGTGCACATTTTTGTCGATGCAGCTTGTGATGAGTCTAAGGGTCGAATAGGTGTTGGGGTCGATATTCGAGATCCTAATGGACGATTGTTGGCAGCTATGACTAATGTTCATGACATCTTTATCAACCCGGCATGTTCAGAAGCATTGCCCATTTTCGATGGTTTGCAGCTAGTAGAGCGTTTAGGATACTCTAAGCTACATATTTTTTCGGACTCATTGACCAATGTGGCTATGATTAATGGGCTACTGAATACAACATCTGATATTCACAACTACGTTAGTGATGTTTTTATCTCTACGCCGGAAGTTTGA

Protein sequence

MNVTKKDTCNIEASRSLWRKEDTWVHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDVFISTPEV
Homology
BLAST of Tan0019308 vs. NCBI nr
Match: TXG57539.1 (hypothetical protein EZV62_015368 [Acer yangbiense])

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-08
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 0

Query: 29  VDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYS 88
           +D A D  +GR G G+ IRD  GR+L A     D  ++   +EA  I++GL L ++ G  
Sbjct: 40  IDVALDLGRGRFGAGIVIRDNIGRILKAAALFFDGRVSADIAEAKAIYEGLLLAKKSGLH 99

Query: 89  KLHIFSDSLTNVAMINGLLNTTSDIHNYVSDVFI 123
            L I SDSL  V +  G + T SD+ N +SD+ I
Sbjct: 100 HLSIESDSLNVVRLCKGEITTRSDVFNVISDIQI 133

BLAST of Tan0019308 vs. NCBI nr
Match: TXG71894.1 (hypothetical protein EZV62_000473 [Acer yangbiense])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-06
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 0

Query: 25  VHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVER 84
           + + VDAA D  + +  VG+ IRD +GR+L +   V +   +   +EA  I++GL L   
Sbjct: 245 IKVNVDAALDVGRNKFSVGIVIRDSSGRILKSAALVFNGRTSTDIAEAKVIYEGLLLATS 304

Query: 85  LGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDV 121
            G   L I SDSL  V + NG ++T +D+ N + D+
Sbjct: 305 SGLQPLSIESDSLNVVRLCNGEISTRNDVFNVICDI 340

BLAST of Tan0019308 vs. NCBI nr
Match: XP_030502555.1 (uncharacterized protein LOC115717715 [Cannabis sativa])

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-06
Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 0

Query: 22   DTWVHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQL 81
            +T + + VDAA D S+ +IG+GV IRD +G ++AAM+            EA  +F GLQL
Sbjct: 1218 ETKLKMNVDAAIDSSRSKIGMGVIIRDSSGSVVAAMSKPAVGNFKSQEMEAKAMFWGLQL 1277

Query: 82   VERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDV 121
             E+L     ++ +D L  V  ING  +  S  H+ V D+
Sbjct: 1278 AEQLQLQLHYVETDCLMLVTAINGAQSQHSSFHDLVKDI 1316

BLAST of Tan0019308 vs. NCBI nr
Match: XP_042941317.1 (uncharacterized protein LOC122275981 [Carya illinoinensis])

HSP 1 Score: 58.5 bits (140), Expect = 4.7e-05
Identity = 36/107 (33.64%), Postives = 52/107 (48.60%), Query Frame = 0

Query: 15  RSLWRKEDTW-VHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEAL 74
           ++ W K   W V +  DAA D    R+G GV IRD  G LLA + ++ D   NP  +EAL
Sbjct: 76  KTKWEKPAGWTVKVNWDAAVDAKNRRVGAGVVIRDSEGELLACLCSICDHVQNPLVAEAL 135

Query: 75  PIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDV 121
            +     L   LG+S + +  DS   V  +N      ++  N + DV
Sbjct: 136 ALRRAAILSVELGFSSVILEGDSQVIVNAVNSDEEIWAEYGNIIEDV 182

BLAST of Tan0019308 vs. NCBI nr
Match: XP_042958132.1 (uncharacterized protein LOC122293688 [Carya illinoinensis])

HSP 1 Score: 58.5 bits (140), Expect = 4.7e-05
Identity = 36/125 (28.80%), Postives = 64/125 (51.20%), Query Frame = 0

Query: 3   VTKKDTCNIEASRSLWRKEDTWVHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHD 62
           V K+ T     + S  + +  W     DA+ D++ G++GVGV +RD N +++A +  V +
Sbjct: 88  VLKQQTIQAWEAPSQGKVKANW-----DASVDKASGKVGVGVVLRDWNSKVIATLRMVQE 147

Query: 63  IFINPACSEALPIFDGLQLVERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDVFI 122
           +F +P  +EA      + L   LG+  + +  DSL    ++ G L + S+  NYV  +  
Sbjct: 148 LFPDPHMAEAYAALQAVMLCNSLGHRDVVLEGDSL---LVVEG-LKSQSNAPNYVGQIVA 203

Query: 123 STPEV 128
            T E+
Sbjct: 208 DTKEI 203

BLAST of Tan0019308 vs. ExPASy TrEMBL
Match: A0A5C7HL89 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_015368 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.8e-08
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 0

Query: 29  VDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYS 88
           +D A D  +GR G G+ IRD  GR+L A     D  ++   +EA  I++GL L ++ G  
Sbjct: 40  IDVALDLGRGRFGAGIVIRDNIGRILKAAALFFDGRVSADIAEAKAIYEGLLLAKKSGLH 99

Query: 89  KLHIFSDSLTNVAMINGLLNTTSDIHNYVSDVFI 123
            L I SDSL  V +  G + T SD+ N +SD+ I
Sbjct: 100 HLSIESDSLNVVRLCKGEITTRSDVFNVISDIQI 133

BLAST of Tan0019308 vs. ExPASy TrEMBL
Match: A0A5C7IST2 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000473 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.1e-07
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 0

Query: 25  VHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVER 84
           + + VDAA D  + +  VG+ IRD +GR+L +   V +   +   +EA  I++GL L   
Sbjct: 245 IKVNVDAALDVGRNKFSVGIVIRDSSGRILKSAALVFNGRTSTDIAEAKVIYEGLLLATS 304

Query: 85  LGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDV 121
            G   L I SDSL  V + NG ++T +D+ N + D+
Sbjct: 305 SGLQPLSIESDSLNVVRLCNGEISTRNDVFNVICDI 340

BLAST of Tan0019308 vs. ExPASy TrEMBL
Match: A0A5C7HDG5 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_020286 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.7e-05
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 0

Query: 29  VDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQLVERLGYS 88
           VDAA D+ +GR+G+G+ IRD NG +LA+     D F  P  +EA+ I  GL     +G  
Sbjct: 12  VDAAIDKDRGRVGIGLIIRDCNGEVLASCAQRIDDFCTPMVAEAVAILRGLMFAREVGIW 71

Query: 89  KLHIFSDSLTNVAMIN--GLLNTTSD 113
              + SD+   V ++N  GL+ +  D
Sbjct: 72  PQVVESDAKAVVDLVNCDGLICSDMD 97

BLAST of Tan0019308 vs. ExPASy TrEMBL
Match: A0A2I4HHX4 (uncharacterized protein LOC109017947 OS=Juglans regia OX=51240 GN=LOC109017947 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.7e-05
Identity = 29/96 (30.21%), Postives = 52/96 (54.17%), Query Frame = 0

Query: 5   KKDTCNIEASRSL--WRKEDT-WVHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVH 64
           K D CN +AS ++  W+     W  +  D A D+ KG IG+GV IRD +G+++A +    
Sbjct: 61  KTDQCNTQASPTVIHWKAPPVDWYKVNWDGAVDKVKGLIGIGVVIRDRSGQVIATLRQKE 120

Query: 65  DIFINPACSEALPIFDGLQLVERLGYSKLHIFSDSL 98
            ++ +P  +E+      ++L   +G  ++ +  DSL
Sbjct: 121 KLYPDPLLAESYGALQAVKLAREIGLHQVILEGDSL 156

BLAST of Tan0019308 vs. ExPASy TrEMBL
Match: A0A803PKJ2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 33/99 (33.33%), Postives = 52/99 (52.53%), Query Frame = 0

Query: 22  DTWVHIFVDAACDESKGRIGVGVDIRDPNGRLLAAMTNVHDIFINPACSEALPIFDGLQL 81
           +T + + VDAA D S+ +IG+GV IRD +G ++ AM+            EA  +F GLQ 
Sbjct: 715 ETKLKMNVDAAIDSSRSKIGIGVIIRDSSGSVVVAMSKPTVGNFKSQEMEAKAMFWGLQW 774

Query: 82  VERLGYSKLHIFSDSLTNVAMINGLLNTTSDIHNYVSDV 121
            + L     ++ +D +  V  ING  +  S  H+ V D+
Sbjct: 775 AQHLQLQLHYVETDGMMLVTAINGTQSQHSSFHDLVKDI 813

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
TXG57539.17.8e-0839.36hypothetical protein EZV62_015368 [Acer yangbiense][more]
TXG71894.11.5e-0635.42hypothetical protein EZV62_000473 [Acer yangbiense][more]
XP_030502555.17.3e-0637.37uncharacterized protein LOC115717715 [Cannabis sativa][more]
XP_042941317.14.7e-0533.64uncharacterized protein LOC122275981 [Carya illinoinensis][more]
XP_042958132.14.7e-0528.80uncharacterized protein LOC122293688 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
A0A5C7HL893.8e-0839.36RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_015368 ... [more]
A0A5C7IST27.1e-0735.42RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000473 ... [more]
A0A5C7HDG56.7e-0537.21RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_020286 ... [more]
A0A2I4HHX46.7e-0530.21uncharacterized protein LOC109017947 OS=Juglans regia OX=51240 GN=LOC109017947 P... [more]
A0A803PKJ21.1e-0433.33Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 29..120
e-value: 3.8E-11
score: 42.9
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 22..121
e-value: 5.4E-8
score: 34.9
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 27..119
e-value: 1.46694E-10
score: 52.7016
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 23..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0019308.1Tan0019308.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity