Tan0019302 (gene) Snake gourd v1

Overview
NameTan0019302
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionpolyadenylate-binding protein 2-like
LocationLG01: 13767558 .. 13770915 (-)
RNA-Seq ExpressionTan0019302
SyntenyTan0019302
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCTAGAAACAAACGCGGAATTGCGAGCGAAAGAGAGATGGAGGAAGAAGAGCACGAGGTGTACGGTGGAGAGATCCCAGTTGAAGGGGAGATGGACGGAGACGTCGACATGTCCGTCCCCGACGACGACGCTGTCAAGGTTGCCGTTCTTTCATTTCTCTTTCTGTTTCTGTCGTGCTCGAAAGAAAACCAGACGAAACAATTCTTGTGATTCGGCTCCTTTTGTGAATTGTGATCGTTTGTATGTCTTTCAGGAGCTTGACGAGATGAAAAAGCGCTTGAAGGAGATGGAGGAGGAAGCAGCGGCTCTCCGAGAAATGCAGGCCAAGGTTGAAAAGGAAATGGGAGCCGTCCAAGGTAGTTTTCTTCTGGCTTCATGTAATTGTTTTCGTTATTAAGTCTTTGTAATGGAATTTTAATTAATTCTTGGAATTTTCTAAATCGAATTGGTTTCGTTGCTGTGATATTGTTAGCGAGATGGAAGAAACTATGATTTTGGGCTTGAAATTTGATGCGTTGTTGTGATCTATTCTCCTGGTTTTACCACTTATTATGTTTATTGCAGTAGAATTGTGCTTCTTTTTTTTGGCTCATGTAATGTCTGAGGAATGTTTTTAGATTATTGAATCTTTTACTATGGTTATTTGAATTGTTTGCTATTGAATTATTATTGTTTTGAAATGGATTATAATTTATGAAATTAACATCGAGTGTTTTATCATAATTATTACTTTCTTTGATGCAATACTTCGATAGCTCCATTACGGTAGTTCACCACCTATCATTATAGTTACTGTTGCCTGAAATTTTTGCTGCATAATTTTTAATTTAAATTTTAGAATACGTTTAAAGCATGAATGTTTAATTTTATGTAACCTACGGAAGCAATAATCGCTTGTTATTTGGTTTGTTTAGCTGATATGGCAAAACAAATTATGATTATGGACCTATGGTTTTTGACAGAGTTATCCGTTCATGTTGGTTGAAAATTTTTTAAACTGGGTGAATTTCAAAGTATGCTAGCTTAGTTATTTTTTTTTCTGTAGTTTTTCTCCAATATGGTCTATTATAGTTATATTTATGATGTTATGTTTGTTGCAGATCCTGCTGGTACATCAGCTAGTCAAGCAGGCAAAGAGGAGACTGATTCGCGATCAGTATTTGTTGGCAATGTGAGGAGAAAAATGTCCCTACAGATGTTCTTTAGATTTGAGAAAAAATTGTTGGTTGTTTGATCTTTGAAAAAATGCTGTTGAAATGAGGAATTTATGCCAAAAAAATTCAAAAAGAAAAAAAAGAAAAAGAAAAAGAAAGAAAGATAGAAAGAAAGAAAATTGTGAATGATGGTTAAAAGACTGGTTTAACAGGAAAAAAATCGGTGAGAAAAAAGAAGAAAAAAGAAATCTGAAATATCAAAAACCATTAGTGAATTGTTACATTTAGAAAAAAGGGGACTGTTTCTAGTTGAACTTATGCTGCTGAAAGGCATACGTTTTGGAGGCTGGGACTGTTAAATGTGGAATAACGATGTTGATGGTTCAACTACAGTATGCTAGGGGATAACTCAAATGTCTCCGAGGAAGCAGGCAAGTCAAGGGCATGCAATTTTAGTTGCAGAGCCTTGTCAATGCTCGCAGCATTGTCGTTTGTGTCTCACAAACGAGCCATAAAGGAGGAGGCGAGGGTGTAAGATAATCGCTTTTTTGTGGCATTATTTTTCTAGTTCGTGCTTCATTTGACCCAGTTAGACCAACTATAGGATTTTAATGCTTGCATTCCACCTTAACCAGTGACCTCTGAAAGAACTATTGAGCCTTTTCTTCATATTAGAAAATATTTACGAGGTTTACTTGTTAATCTAGACTTTTCCTTTTAGTTAGACACTCATCCTGTCATCTTCCTGCTGAGAATCCTTATTTCACGATGTGAACTAATAAGATTAATGTGGGAAATCCTCTATGTTGAAGAAGAAACACCTCATTCATATCTAAAGTAGAACTAATAAGATTAATGTGTCTGCTATGTGATTCTTATGCCTCTAATTGACTGACACTTCACTGACACTTCACATATGATTTGAATCATCGCGGTGATTCGGTGATTTTGGTTAGAGTTGTTTTCCTTGGCACAGTTTATGATTCTCTTCCCGGCTCATTGGAATTTTGTTATTTCTCAATGTTGCTTTGGCGTGTCTTATCCCATAACTGGTTGATTTGGTGTGATAAAGTTTGTTTGACTTGTCTTTTTCCTTCTTTACAAAGCTTTTTTGATGTATAACTTCATCAAGCAGCCTAACAATTGACCAAACAATTAATTCATACTGAAAATGTGTTTTGTATTTATTTTAAAGGTTGAACAACAATCGTAAAACGTTGTTCTTAACCATAACAACATTCTAACTTAGTTACTGCTATCTGATCTTTTCTCAAATGAATTACTAATAAGTTATTCAAAGAACAGAGAAAACTTCGAATTTTTTGTTCATTGTTGATAGTACTTTACCATTTTATGCTCAGAGCTTTGCTTCAATAATCAAAATCCTTGTTTTGAAGGTTGACTATGCATGCACACCCGAGGAAGTGCAACAACATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACAGATAAATTTGGTCAGCCGAAGGGTTTTGCTTATGTAGAATTTCTTGAAGCTGAAGCTGTTCAGGAAGCCCTCCTTCTGAATGAATCTGAACTACACGGACGACAACTTAAGGTATCTTTGTTGAAGGGTATCCTTCATTGTTCTCAATGAATGCTTGATTTTTCACATAATAGAATTAGAATCTTTGTAAAGGAGAAGCCTTTCTGGTTCATTGGTTTGGTATGAAAGTGGATATCGTGCAATGTTTGGGAACTTCATTATCACTCTGACTTTACTATTTGCTTGCTTACTCTATTCCAGGTTCTGCCAAAGAGAACAAATGTTCCTGGCATGAAGCAATATCGTCCCCGGCGTTATAACCCATACATGGGATTTAGGAGGCCTTATGTACCACCATATTTCTATTCACCTTACGGCTACGGGTACGGTTTCTAAGTCTTGATGTTGCATTGTCATGAAACTCTTAATTTTGCTAATTGATTGATCCTTCAATATCCCATTGCAGGAAGATGCCCCGGTTTCGAAGGTCGATGAGATACATGCCCTACCATTAGATGCTAAGATTGTTCAGGTTTGATAAGTTTGTCCTGAAAGAGTTGGTACTTGCTTCTGAACCTTGAGAGAATATTAAAAGGATGTATGTCTATATTCACAATATTTGTTATTGCTTTTACTATCTTGGACGGATATTTACAATAATCAAATACTTTGCTGTTTCAATAA

mRNA sequence

ATTTCTAGAAACAAACGCGGAATTGCGAGCGAAAGAGAGATGGAGGAAGAAGAGCACGAGGTGTACGGTGGAGAGATCCCAGTTGAAGGGGAGATGGACGGAGACGTCGACATGTCCGTCCCCGACGACGACGCTGTCAAGGAGCTTGACGAGATGAAAAAGCGCTTGAAGGAGATGGAGGAGGAAGCAGCGGCTCTCCGAGAAATGCAGGCCAAGGTTGAAAAGGAAATGGGAGCCGTCCAAGATCCTGCTGGTACATCAGCTAGTCAAGCAGGCAAAGAGGAGACTGATTCGCGATCAGTATTTGTTGGCAATGTTGACTATGCATGCACACCCGAGGAAGTGCAACAACATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACAGATAAATTTGGTCAGCCGAAGGGTTTTGCTTATGTAGAATTTCTTGAAGCTGAAGCTGTTCAGGAAGCCCTCCTTCTGAATGAATCTGAACTACACGGACGACAACTTAAGGTTCTGCCAAAGAGAACAAATGTTCCTGGCATGAAGCAATATCGTCCCCGGCGTTATAACCCATACATGGGATTTAGGAGGCCTTATGTACCACCATATTTCTATTCACCTTACGGCTACGGGAAGATGCCCCGGTTTCGAAGGTCGATGAGATACATGCCCTACCATTAGATGCTAAGATTGTTCAGGTTTGATAAGTTTGTCCTGAAAGAGTTGGTACTTGCTTCTGAACCTTGAGAGAATATTAAAAGGATGTATGTCTATATTCACAATATTTGTTATTGCTTTTACTATCTTGGACGGATATTTACAATAATCAAATACTTTGCTGTTTCAATAA

Coding sequence (CDS)

ATGGAGGAAGAAGAGCACGAGGTGTACGGTGGAGAGATCCCAGTTGAAGGGGAGATGGACGGAGACGTCGACATGTCCGTCCCCGACGACGACGCTGTCAAGGAGCTTGACGAGATGAAAAAGCGCTTGAAGGAGATGGAGGAGGAAGCAGCGGCTCTCCGAGAAATGCAGGCCAAGGTTGAAAAGGAAATGGGAGCCGTCCAAGATCCTGCTGGTACATCAGCTAGTCAAGCAGGCAAAGAGGAGACTGATTCGCGATCAGTATTTGTTGGCAATGTTGACTATGCATGCACACCCGAGGAAGTGCAACAACATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACAGATAAATTTGGTCAGCCGAAGGGTTTTGCTTATGTAGAATTTCTTGAAGCTGAAGCTGTTCAGGAAGCCCTCCTTCTGAATGAATCTGAACTACACGGACGACAACTTAAGGTTCTGCCAAAGAGAACAAATGTTCCTGGCATGAAGCAATATCGTCCCCGGCGTTATAACCCATACATGGGATTTAGGAGGCCTTATGTACCACCATATTTCTATTCACCTTACGGCTACGGGAAGATGCCCCGGTTTCGAAGGTCGATGAGATACATGCCCTACCATTAG

Protein sequence

MEEEEHEVYGGEIPVEGEMDGDVDMSVPDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMGFRRPYVPPYFYSPYGYGKMPRFRRSMRYMPYH
Homology
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BLAST of Tan0019302 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 8.0e-93
Identity = 181/220 (82.27%), Postives = 195/220 (88.64%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEMDG-------DVDMSVPDDDAVKELDEMKKRLKEMEEEAAAL 60
           MEEEEHEVYGGEIP  GEMDG       D+DM+  DDDAVKELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVN 120
           REMQAKVEKEMGA QDPA  +A+QAGKEE D+RSVFVGNVDYACTPEEVQQHFQ+CGTV+
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVH 120

Query: 121 RVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 180
           RVTILTDKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKVL KRTNVPG+KQ+R R
Sbjct: 121 RVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGR 180

Query: 181 RYNPYMG--FRRPYVPPYFYSPYGYGKMPRFRRSMRYMPY 212
           R+NPYMG  FRRP++ PY YSPYGYGK PRFRR MRYMPY
Sbjct: 181 RFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219

[Close]
BLAST of Tan0019302 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 4.4e-91
Identity = 176/216 (81.48%), Postives = 188/216 (87.04%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEM---DGDVDMSVPDDDAVKELDEMKKRLKEMEEEAAALREMQ 60
           MEEEEHEVYGGEIP  G+    D D+DMS  D+DAV EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 61  AKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 120
           AKVEKEMGA QDPA  +A+Q GKEE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 121 LTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNP 180
           L DKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKV PKRTNVPGMKQY P R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 181 YMG--FRRPYVPPYFYSPYGYGKMPRFRRSMRYMPY 212
            MG  FRRP+VPPYFYSPYGYGK PRFRR MRYMPY
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]
BLAST of Tan0019302 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-69
Identity = 150/227 (66.08%), Postives = 176/227 (77.53%), Query Frame = 0 

Query: 2   EEEEHEVYGGEIP--VEGEMD--------GDVDMSVPDDD-----AVKELDEMKKRLKEM 61
           +E+EHEVYGGEIP   EGEMD        G+   +  D++     + ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 62  EEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHF 121
           EEEA ALREMQAK EK+MGA QDP+G   S A KEE DSRS++VGNVDYACTPEEVQQHF
Sbjct: 65  EEEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHF 124

Query: 122 QSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPG 181
           QSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQ +L+LNESELHGRQ+KV  KRTNVPG
Sbjct: 125 QSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPG 184

Query: 182 MKQY--RPRRYNPYMGFRRPYVPPYFYSPYGYGKMPRFRRSMRYMPY 212
           M+Q+  R R + P  GF  P VP  FY PY YG++PRFRR MRY PY
Sbjct: 185 MRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYGRVPRFRRPMRYRPY 227

[Close]
BLAST of Tan0019302 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.8e-34
Identity = 86/145 (59.31%), Postives = 100/145 (68.97%), Query Frame = 0 

Query: 30  DDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVF 89
           D   KEL EMK+R+ EME EAA LR MQ +++ E         T A +  KE  D++SV+
Sbjct: 8   DTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNE---------TEALRNDKESIDAQSVY 67

Query: 90  VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEAEAVQEALLLNES 149
           VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  ALLLN S
Sbjct: 68  VGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGS 127

Query: 150 ELHGRQLKVLPKRTNVPGMKQYRPR 174
            LH R LKV PKRTNVPGM + R R
Sbjct: 128 MLHERPLKVTPKRTNVPGMSRGRGR 143

[Close]
BLAST of Tan0019302 vs. ExPASy Swiss-Prot
Match: Q9DDY9 (Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.0e-32
Identity = 99/226 (43.81%), Postives = 128/226 (56.64%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVPDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60
           +EE E E    E P  GE+ GD  +  P      EL+ +K R++EMEEEA  L+E+Q +V
Sbjct: 83  LEELEDEELEEEEP--GELTGDQTIEDP------ELEAIKARVREMEEEAEKLKELQNEV 142

Query: 61  EKEMGAVQDPAGTS---ASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 120
           EK+M     P        S   K E D+RS++VGNVDY  T EE++ HF  CG+VNRVTI
Sbjct: 143 EKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTI 202

Query: 121 LTDKF-GQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMK-------- 180
           L DKF G PKGFAY+EF + E+V+ +L L+ES   GRQ+KV+PKRTN PG+         
Sbjct: 203 LCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPR 262

Query: 181 -QYRPR--RYNPYMGFRRPYVPPYFYSPYGYGKMPRFRRSMRYMPY 212
            +YR R   Y+    F   Y P     P G     R R +  Y PY
Sbjct: 263 ARYRARASSYSSRSRFYSGYTP----RPRGRVYRGRARATSWYTPY 296

[Close]
BLAST of Tan0019302 vs. NCBI nr
Match: XP_022136947.1 (polyadenylate-binding protein 2-like isoform X1 [Momordica charantia])

HSP 1 Score: 407.5 bits (1046), Expect = 6.9e-110
Identity = 208/212 (98.11%), Postives = 209/212 (98.58%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVPDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60
           MEEEEHEVYGGEIPVEGEMDGDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60

Query: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120
           EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 121 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG 180
           KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG
Sbjct: 121 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG 180

Query: 181 FRRPYVPPYFYSPYGYGKMPRFRRSMRYMPYH 213
           FRRPYVPPYFYSPYGYGKMPRFRR MRYMPY+
Sbjct: 181 FRRPYVPPYFYSPYGYGKMPRFRRPMRYMPYY 212

[Close]
BLAST of Tan0019302 vs. NCBI nr
Match: XP_038884177.1 (polyadenylate-binding protein 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 405.6 bits (1041), Expect = 2.6e-109
Identity = 207/212 (97.64%), Postives = 208/212 (98.11%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVPDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60
           MEEEEHEVYGGEIPVEGEMDGDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSGADDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60

Query: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120
           EKEMGAVQDPAGTSA QAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  EKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 121 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG 180
           KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG
Sbjct: 121 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG 180

Query: 181 FRRPYVPPYFYSPYGYGKMPRFRRSMRYMPYH 213
           FRRPY PPYFYSPYGYGKMPRFRRSMRYMPY+
Sbjct: 181 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

[Close]
BLAST of Tan0019302 vs. NCBI nr
Match: XP_022929268.1 (polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022929269.1 polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022985028.1 polyadenylate-binding protein 2-like [Cucurbita maxima] >XP_023553273.1 polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo] >XP_023553274.1 polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo] >KAG6577291.1 Polyadenylate-binding protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 405.6 bits (1041), Expect = 2.6e-109
Identity = 206/212 (97.17%), Postives = 209/212 (98.58%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVPDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60
           MEEEEHEVYGGEIPVEGEMDGDVDMSV DDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60

Query: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120
           EKEMGAVQDPAGTS SQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  EKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 121 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG 180
           KFGQPKGFAYVEFLEA+AVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPY+G
Sbjct: 121 KFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG 180

Query: 181 FRRPYVPPYFYSPYGYGKMPRFRRSMRYMPYH 213
           FRRPY PPYFYSPYGYGKMPRFRRSMRYMPY+
Sbjct: 181 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

[Close]
BLAST of Tan0019302 vs. NCBI nr
Match: XP_004146877.1 (polyadenylate-binding protein 2 [Cucumis sativus] >XP_031745674.1 polyadenylate-binding protein 2-like [Cucumis sativus] >XP_031745676.1 polyadenylate-binding protein 2-like [Cucumis sativus])

HSP 1 Score: 400.6 bits (1028), Expect = 8.5e-108
Identity = 204/212 (96.23%), Postives = 208/212 (98.11%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVPDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60
           MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 1   MEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60

Query: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120
           EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 121 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG 180
           KFGQPKGFAYVEFLEAEAVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYR RRYNPY+G
Sbjct: 121 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 180

Query: 181 FRRPYVPPYFYSPYGYGKMPRFRRSMRYMPYH 213
           FRRPY PPYFYSPYGYGKMPRFRRSMRYMPY+
Sbjct: 181 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

[Close]
BLAST of Tan0019302 vs. NCBI nr
Match: KGN53209.1 (hypothetical protein Csa_014786 [Cucumis sativus])

HSP 1 Score: 400.6 bits (1028), Expect = 8.5e-108
Identity = 204/212 (96.23%), Postives = 208/212 (98.11%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVPDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60
           MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 23  MEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 82

Query: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120
           EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 83  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 142

Query: 121 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG 180
           KFGQPKGFAYVEFLEAEAVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYR RRYNPY+G
Sbjct: 143 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 202

Query: 181 FRRPYVPPYFYSPYGYGKMPRFRRSMRYMPYH 213
           FRRPY PPYFYSPYGYGKMPRFRRSMRYMPY+
Sbjct: 203 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]
BLAST of Tan0019302 vs. ExPASy TrEMBL
Match: A0A6J1C6V0 (polyadenylate-binding protein 2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008517 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.4e-110
Identity = 208/212 (98.11%), Postives = 209/212 (98.58%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVPDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60
           MEEEEHEVYGGEIPVEGEMDGDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60

Query: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120
           EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 121 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG 180
           KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG
Sbjct: 121 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG 180

Query: 181 FRRPYVPPYFYSPYGYGKMPRFRRSMRYMPYH 213
           FRRPYVPPYFYSPYGYGKMPRFRR MRYMPY+
Sbjct: 181 FRRPYVPPYFYSPYGYGKMPRFRRPMRYMPYY 212

[Close]
BLAST of Tan0019302 vs. ExPASy TrEMBL
Match: A0A6J1EN98 (polyadenylate-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435898 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.3e-109
Identity = 206/212 (97.17%), Postives = 209/212 (98.58%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVPDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60
           MEEEEHEVYGGEIPVEGEMDGDVDMSV DDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60

Query: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120
           EKEMGAVQDPAGTS SQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  EKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 121 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG 180
           KFGQPKGFAYVEFLEA+AVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPY+G
Sbjct: 121 KFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG 180

Query: 181 FRRPYVPPYFYSPYGYGKMPRFRRSMRYMPYH 213
           FRRPY PPYFYSPYGYGKMPRFRRSMRYMPY+
Sbjct: 181 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

[Close]
BLAST of Tan0019302 vs. ExPASy TrEMBL
Match: A0A6J1JCD2 (polyadenylate-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111483120 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.3e-109
Identity = 206/212 (97.17%), Postives = 209/212 (98.58%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVPDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60
           MEEEEHEVYGGEIPVEGEMDGDVDMSV DDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60

Query: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120
           EKEMGAVQDPAGTS SQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  EKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 121 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG 180
           KFGQPKGFAYVEFLEA+AVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPY+G
Sbjct: 121 KFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG 180

Query: 181 FRRPYVPPYFYSPYGYGKMPRFRRSMRYMPYH 213
           FRRPY PPYFYSPYGYGKMPRFRRSMRYMPY+
Sbjct: 181 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 212

[Close]
BLAST of Tan0019302 vs. ExPASy TrEMBL
Match: A0A0A0KWF2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G026860 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 4.1e-108
Identity = 204/212 (96.23%), Postives = 208/212 (98.11%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVPDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60
           MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 23  MEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 82

Query: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120
           EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 83  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 142

Query: 121 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG 180
           KFGQPKGFAYVEFLEAEAVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYR RRYNPY+G
Sbjct: 143 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 202

Query: 181 FRRPYVPPYFYSPYGYGKMPRFRRSMRYMPYH 213
           FRRPY PPYFYSPYGYGKMPRFRRSMRYMPY+
Sbjct: 203 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]
BLAST of Tan0019302 vs. ExPASy TrEMBL
Match: A0A5D3D298 (Polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00070 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.2e-107
Identity = 203/212 (95.75%), Postives = 207/212 (97.64%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVPDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60
           MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 23  MEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 82

Query: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120
           EKEMGAVQDPAGTSA QAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 83  EKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 142

Query: 121 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMG 180
           KFGQPKGFAYVEFLEAEAVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYR RRYNPY+G
Sbjct: 143 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 202

Query: 181 FRRPYVPPYFYSPYGYGKMPRFRRSMRYMPYH 213
           FRRPY PPYFYSPYGYGKMPRFRRSMRYMPY+
Sbjct: 203 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]
BLAST of Tan0019302 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 341.3 bits (874), Expect = 5.7e-94
Identity = 181/220 (82.27%), Postives = 195/220 (88.64%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEMDG-------DVDMSVPDDDAVKELDEMKKRLKEMEEEAAAL 60
           MEEEEHEVYGGEIP  GEMDG       D+DM+  DDDAVKELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 61  REMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVN 120
           REMQAKVEKEMGA QDPA  +A+QAGKEE D+RSVFVGNVDYACTPEEVQQHFQ+CGTV+
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVH 120

Query: 121 RVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 180
           RVTILTDKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKVL KRTNVPG+KQ+R R
Sbjct: 121 RVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGR 180

Query: 181 RYNPYMG--FRRPYVPPYFYSPYGYGKMPRFRRSMRYMPY 212
           R+NPYMG  FRRP++ PY YSPYGYGK PRFRR MRYMPY
Sbjct: 181 RFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219

[Close]
BLAST of Tan0019302 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 335.5 bits (859), Expect = 3.1e-92
Identity = 176/216 (81.48%), Postives = 188/216 (87.04%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEM---DGDVDMSVPDDDAVKELDEMKKRLKEMEEEAAALREMQ 60
           MEEEEHEVYGGEIP  G+    D D+DMS  D+DAV EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 61  AKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 120
           AKVEKEMGA QDPA  +A+Q GKEE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 121 LTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNP 180
           L DKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKV PKRTNVPGMKQY P R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 181 YMG--FRRPYVPPYFYSPYGYGKMPRFRRSMRYMPY 212
            MG  FRRP+VPPYFYSPYGYGK PRFRR MRYMPY
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]
BLAST of Tan0019302 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 310.8 bits (795), Expect = 8.2e-85
Identity = 164/202 (81.19%), Postives = 176/202 (87.13%), Query Frame = 0 

Query: 1   MEEEEHEVYGGEIPVEGEM---DGDVDMSVPDDDAVKELDEMKKRLKEMEEEAAALREMQ 60
           MEEEEHEVYGGEIP  G+    D D+DMS  D+DAV EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 61  AKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 120
           AKVEKEMGA QDPA  +A+Q GKEE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 121 LTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNP 180
           L DKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKV PKRTNVPGMKQY P R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 181 YMG--FRRPYVPPYFYSPYGYG 198
            MG  FRRP+VPPYFYSPYGYG
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYG 202

[Close]
BLAST of Tan0019302 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 264.2 bits (674), Expect = 8.8e-71
Identity = 150/227 (66.08%), Postives = 176/227 (77.53%), Query Frame = 0 

Query: 2   EEEEHEVYGGEIP--VEGEMD--------GDVDMSVPDDD-----AVKELDEMKKRLKEM 61
           +E+EHEVYGGEIP   EGEMD        G+   +  D++     + ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 62  EEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHF 121
           EEEA ALREMQAK EK+MGA QDP+G   S A KEE DSRS++VGNVDYACTPEEVQQHF
Sbjct: 65  EEEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHF 124

Query: 122 QSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPG 181
           QSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQ +L+LNESELHGRQ+KV  KRTNVPG
Sbjct: 125 QSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPG 184

Query: 182 MKQY--RPRRYNPYMGFRRPYVPPYFYSPYGYGKMPRFRRSMRYMPY 212
           M+Q+  R R + P  GF  P VP  FY PY YG++PRFRR MRY PY
Sbjct: 185 MRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYGRVPRFRRPMRYRPY 227

[Close]
BLAST of Tan0019302 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 242.3 bits (617), Expect = 3.6e-64
Identity = 147/264 (55.68%), Postives = 174/264 (65.91%), Query Frame = 0 

Query: 2   EEEEHEVYGGEIP--VEGEMD--------GDVDMSVPDDD-----AVKELDEMKKRLKEM 61
           +E+EHEVYGGEIP   EGEMD        G+   +  D++     + ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 62  EEEAAALREMQAKVEKEMGAVQ-------------------------------------D 121
           EEEA ALREMQAK EK+MGA Q                                     +
Sbjct: 65  EEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYEKE 124

Query: 122 PAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFA 181
              +  S A KEE DSRS++VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFA
Sbjct: 125 IINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFA 184

Query: 182 YVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQY--RPRRYNPYMGFRRPYVP 212
           YVEF+E EAVQ +L+LNESELHGRQ+KV  KRTNVPGM+Q+  R R + P  GF  P VP
Sbjct: 185 YVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF-MPGVP 244

The following BLAST results are available for this feature:
BLAST of Tan0019302 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FJN98.0e-9382.27Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV... [more]
Q9LX904.4e-9181.48Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV... [more]
Q93VI41.2e-6966.08Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV... [more]
O143273.8e-3459.31Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ... [more]
Q9DDY96.0e-3243.81Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=... [more]
BLAST of Tan0019302 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022136947.16.9e-11098.11polyadenylate-binding protein 2-like isoform X1 [Momordica charantia][more]
XP_038884177.12.6e-10997.64polyadenylate-binding protein 2 isoform X1 [Benincasa hispida][more]
XP_022929268.12.6e-10997.17polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022929269.1 polyad... [more]
XP_004146877.18.5e-10896.23polyadenylate-binding protein 2 [Cucumis sativus] >XP_031745674.1 polyadenylate-... [more]
KGN53209.18.5e-10896.23hypothetical protein Csa_014786 [Cucumis sativus][more]
BLAST of Tan0019302 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C6V03.4e-11098.11polyadenylate-binding protein 2-like isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1EN981.3e-10997.17polyadenylate-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1114358... [more]
A0A6J1JCD21.3e-10997.17polyadenylate-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111483120... [more]
A0A0A0KWF24.1e-10896.23RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G026860 PE=4 SV... [more]
A0A5D3D2981.2e-10795.75Polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=119469... [more]
BLAST of Tan0019302 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G65260.15.7e-9482.27RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G10350.13.1e-9281.48RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G10350.28.2e-8581.19RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G51120.18.8e-7166.08polyadenylate-binding protein 1 [more]
AT5G51120.23.6e-6455.68polyadenylate-binding protein 1 [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 29..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..85
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 1..210
NoneNo IPR availablePANTHERPTHR23236:SF79SUBFAMILY NOT NAMEDcoord: 1..210
NoneNo IPR availableCDDcd12306RRM_II_PABPscoord: 87..158
e-value: 9.20193E-49
score: 152.06
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 87..158
e-value: 6.5E-21
score: 85.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 88..156
e-value: 2.5E-16
score: 59.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 86..162
score: 16.738909
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 26..158
e-value: 7.7E-29
score: 102.5
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 76..187

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0019302.1Tan0019302.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding