Tan0019280 (gene) Snake gourd v1

Overview
NameTan0019280
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
LocationLG08: 37139845 .. 37146547 (-)
RNA-Seq ExpressionTan0019280
SyntenyTan0019280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAAGCTCGAGCAAAATCTGATGTGAATCAAACCATTGATCCATTGCATGTACCTGAAGGAGCAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAAGCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACGGGAAAAGTTGTCTAGTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGAAAATGTGAACAGGTGGCTGTCTAGATTGCACCTCTTGGGATTTCGTGATGTCAAACCTCATCAAACGAAATAGTCATGCATGGCGGATCCTACAGTAGATAATTAAGACCATTTAAAGCATTTCTATGTTTTTTCTTCCATATTTAGAGCTCTCAAACGTTGTGCAATCAAGTTTTAAATTCCTAGGTCAATTTTTTCTTCATTTCACATTTAATGCTTTTTAAAGACTTTTGGTCTTTGGTCCTTTGCACGACCATTTTGGCCTATTTAAAGGCTTGTATTGGCATGGAAAAGGCAGAACCTTTATGAAAAAAACTTGAGTTTTGTTTAGCCCCATTTGGTGTTAACTTTCTTTCAAATCTTGCTTTAGGTTTGATGTTTAACCGATTCATTGGATTAGCCCCGATCAAGCTAATTCTGGAGTGAGTCGTCTTAGGATCTAGGAGTGACCATCCTTATTCTAAGTTTGATCTAAGAGTGGTTCATCTTCTAACTAAACTCTTAGTTGGAATCAATTCGTTAAGTTAGCCTTGTTCGTGACGTTTGCAAAGATCCTAGAAGGACCTCTAGCTTTGTTAAACCAACAAATTTGGGCGCTTATCATTTGGTATCGTGAGCTCGTTGGTCGACATCCTTTGGCCGACTCTCTAGAGGTGAAATATCTTCAATTTGCTTTACTTTATTTTCTTTCATTTTTTTATCATTTACAAAGTTTAATACAAGGCATCCTACAACTTTTCTTCCATTTCTTTGTGTTTAGTTCTTGGATAAAAAAAAACAGTAGCAAAAAGTGAAAAACAAAAAAAGTAGCAAAAAGTGAAAAAAAAAAGCAGTAGCAAAAAGTAGAAAAAAAATAGTAGCAAAGAAAAAAAAAAGTGTTCAAGGATCCAAGACACACAAAAGTTCTTGATTTTAAATTTTATTTTCTCAAAACTTTGAGTTGTAGATCCTTAGGATGAGTTTCTCTAGTCTTAGCTTGTGAAAGGTTATCATTGATTTAGTTTTATATCAAGTTGAAAAGCAAGGTTGCACCAAATTTTTAAACCAACCCTTACATCTTTGACCTAGTACCAAAAGCCTACCCTTGAGTGATAAACACGAGTGTCCTTGAGTGATATCTTGGTGAGAAGTGTGGAGAGGTCCTTATAAAAAAAAATGTCACAAGATAATAAAGAAAAAGTTCCGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGGATGATGGAGATGATGAGAGAAGAAAGGGAAGAAAGGAGAGCACAACAACAAAGAGAAGAACGAATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAGGTACAAGAAAGAAACTTAGGAGGAAGAGGAAATGTGAGGGGAAGAGGAAGAAATAACGTTGCAAACATTGTGCAACCTAGAAGAGTGGAAAGAGTGAATGAAGAAAGGGATAGCGGAGTGAAACCTCGAATTCCACCCTTTAGTGGTACCGCTGGACTCGAGGCATACTTGCAATGGGAAAGAAAAATAGAACATGTATTTGATTGTAATACATATAGTGAGAATAAGAAGATGAAACTTGCCATTGCCGAATTCACCAATCATGCGGGAGAATGGTATCAACATCTCAAATCCGAGAGAAGAAGGAAAGAGGAAGATCCAATAGAAACTTGGGAAGAACTTAAAGAAGCCATGAGAAAGAGGTATGTTCCAAAACATTATGAAAGAGATTTGAAAACTAAATTGCAATCTTTGAGACAGGGAACAAAAAGTGTTGCTGAATATTATCAAGAGATGGAGTCCTTGATGGAAAGAGCAAAAATTCGAGAAGAAGAGGAAGACACCATGTCTCGATTCCTTGGAGGTTTGAATCGAGAAATTGCTCATCCGGTTGATAGAAATCCACCACCTTACCTTGAAGATATGTATCATTATGCTATCAAAATTGAAGCTCAATTGAAGGAAGAAAAGGAGCATTCAAAAGGTATACACCTAAAGCTAGTACCTTTTCAAACTCTAATGCATGGAACAAGGATAGTTTTGTGAATAGGAATGAACCGACACAACAAAGAAGCAAGTTTGTTGCTGCCAAAAGAGTGGAGGCCGAAAGCTCCAATGCTAAAAAGAATGAAGCTTCAAAGGAGGTAAGGGAAAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACGTGAGCAAAGAATGTGTCAATAAAAGAGTTATGGTGATAAGAAATGGTGTAGTTGATTCGGAGGATGAATGTGAGGAGCATGATGCCCCATTTGAGGAAGAATCTGAAATATGTGATGATGAGTATGTTGAAGAAGGTAACTCCATATCGTTGATCACAAGGAGGGTCCTTAGTATGCAAATCAAGGAAGACAAAGTTGAAGACCAAAGGGAAAACTTGTTTCACACAAGATGCCTAATTAAAGGAAGTCCATGCAGTTTGGTGATTGATAGTGAGAGTTGCACAAATGTGGTAAGTAGTTTTCTTGTAAAGAGACTTCAACTTACTACCCGTCCACATCCAAAGCCATACAAACTTCAATGGTTGACAAACAAAGGAGAACTTAAGGTAAATTCTCAAGTTCTTATTCCTTTTACTTTGGGAAGATATAAGGATGAAGTACTTTGTGATGTTTTACCTATGCATGCGGGGATATATTGTTAGGCCGACCTTGGCAATATGATAGAGAGGTCACATTTGATGGAGTGAAAAATAAGTATTCGTTTACCTTCAGCGGGAAGAAATTTACTTTACTTCCATTGTCTCCATATGAAGTACATTGTGATCATTTGAAATTAGAGAAGAAAAGAAAAGAGTTTGAAGAAGAAGAGAGAGAGAAGAAAGTAAGTTAAAAGAAAAGAAAAGAGTGAAAAGAAAGAGAGAAGTGAGGGGCAAAAGGTGAGTGAAAACCAAGAGAGAAAAAGAGTGATTTTGAGGAAAAAGAAAGAATGTGAGTTTGGTTATAAGAAAGGGGGAAGTGAGGAATGTGTTGTTGACACAACAACCAAAATTTGTACTTATGTGCAAAGGGATGTGTTTAACAACTAACCCAAAATCTAATGATATTTTGCCAAGTTCTTTTAAGTCTCTTTTGCAGGAATTTAATGATATGTTTCCACATGAAGATGCACCTACTGGATTTACCTCCTTTAAGAGGGATTGAACATCAAATTGACTTCATACCGGGGCAACTCTTCCAAACATGGCAGCTTATAGGACCAATCCAACCGAGACTAAGGAGATTCAAAGGCAAGTAGAAGAACTCATGGATAAAGGTTATGTTAGAGAAAGCATGAGTCCTTGCTCATTCAGGTGATTTTGGTACCCAAGAAGGATGGCACATGGAGAATGTGTGTTGATTGTCGAGCCATCAACAAGATAACGGTAAAGTATCGACATCCCATTCCTAGATTGGATGACATGCTAGATGAATTACATGGTGCTAATCTGTTTTCAAAAATAGATCTTAAAAGTGGTTATCATCAAATTCGAATGCATGTGGGAGATGAGTGGAAAACGGCTTTTAAAACAAAATTTGGACTTTATGAGTGGCTTGTTATGCCATTTGGCCTTAATAATGCACCAAGTACTTTTATGAGGCTAATGAATCATGTGTTGAGAGAGTACATTGGAAAATTTGTTGTTGTGTACTTTGATGACATTCTTGTTTACTCAAAAAGCTTGGATGATCATATTTTGCATGTTAAGACAATTTTACTTAAACTTAGAGAAGAGAAGCTATATGTCAACTTCAAAAAAGTGTAGTTTTTGTCTAGACCAAGTCAATTTCCTAGGTTTCATTGTTGGAAGGAATGGTGTGCAAGTTGATGAAGAAAAGGTAAAGGCTATCCGAGAGTGGCCAACACCTACCAATGCAAATGAGGTGAGATCTTTTCATGGTTTGGCTAGTTTTTATAGGAGGTTTATTAAGAATTTCAGTAGTATAGCCTCACCATTAAATGAACTTGTCAAAAAGTATGTGAAATTTGAATGGACAGAAAAACAAGAAGATGCATTTAATGAATTAAAAGATAAATTGACCAATGCACCTTGTCTTGCTTTACCTAACTTTGACAAATCTTTTGAGATTGAATGTGATGCGAGCGGGATAGGTATAGGAGCTGTTTTGATGCAAGAAAAGAGGCCAATCATGTTCTTTAGTGAGAAGCTAAATGGAGCACAACTCAACTACTCGACATATGACAAAGAACTGCATGCACTTGTGAGGACTTTGCAAGTTTGGCAACATTACTTGTGGCCAAAAGAGTTTGTTATCCACACTGATCATGAAAGTTTGAAGCACCTCAAAAGCCAAACAAAGCTAAATAGGAGGCATGCGAAATGGGTAGAGTTCATTGAGACATTTCCTTTTGTCATTCATTACAAAAAAGGTAAGGATAATGTGGTGGCCGATGCATTATCAAGAAGGTATGCATTATTTTCTGCCCTTAGTGCAAAGATTCTTGGTTTTAAACATATGATTGAGCTTTACAAAGTTGAGAAATCTGAATTTCATGATGTGTATATGCAATGTTTAGGAGGAAACAACGTACATGATCATGTTGTATTTGATGGTATGCTTTTTAGGAAGGGTAAACTTTGCATTCCTAAGTGTTCTATTCGATAGTTACTTGTGAAGGAAGCTCATGGGGGAGGTCTTATGGGACATTTTGGGGAGTTTAAAACATACAACATGTTGTGTGAACACTTTTATTGGTTGAAAATGAGGAAGGATGTGAATAAAGTGTGCAAGCAATGTTTCAAATGTAAGGAAGCTAAGTCTAAAACACAACCACATGGACTTTATACACCTTTAGATGTTCCTAGTGAACCGTGGGTTGACATTAGCATGGATTTTGTTCTAGGATTGCCAAAGACTAGGAGACATCATGATAGCATTTTTGTGGTGGTTGATAGGTTTAGTAAAATGACACATTTCATTCCATGTAACAAAACAGATGATGCAACTAATATAGCTAATCTATTCTTTAGGGAAGTAGTTAGATTGCATGGCATTCCAAAAATCATTGTAAGTGATAGAGATGCCAAATTTTTAAGTCATTTTTGGAAAGTTTTGTGGGGTAAATTGGGAACTAAGCTTTTGTTTTCTACAACTTGTCACCCCCAAACTGATGGGCAAACCGAGGTGGTTAATAGAACTTTAGGGGCATTACTTAGATCGCTAATTTCTAAGAATCTTAAGTCTTGGGAAGAGACTCTACTTTTGTGGAGTTTGCATACAATAGAAGCGATACATAGCACCACTCATTGTTCACCTTTTGAGGTTGTGTATGGATTTAATCCCTTAACTCCTCTAGATTTATCACCTTTACCACCTAATATGTTTTCTAGTGATGCATTTGTTTCTAAAGCCGAATACATCAAAAATCTGCACAAAGAAGTCAAGGAAAGAATTGAAAAGAAAAATGAAAAGCTAGTCACTCAGAAGAACCAAGGGAGAAAGAAATTGATTTTTAAGCCGGGTGAATGGGTCTGGGTTCATCTACGAAAGGAAAGGTTTTCGGACCAAAGGAAGTCTAAACTTCAACCAAGGGGAGATGGTCCATTTCAAGTATTAGAGCGGATCAATGAAAATGCATACAAACTAGATCTCCGAGGTGAGTACAATGTAAGTTCTACTTTTAATGTGGCTGATTTGACTCCTTTTGATGTAGGAAATGAAGACGTTGATTTGAGGACAAATCCTTTTAAAGAAAGGGGGGATGATGTGAATCAAACCATTGATCCATTGCATGTACCTGAAGGAGCAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAAGCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACAGGAACAGTTGTCTAGTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGAAAATGTGAACAGGTGGCTGTCTAGATTGCACATCTTGGGATTTCGTGATGTCAAAACTCGTCAAACGAAATAGTCATGCATGGCGGATCCTACAGTAGATAATTAAGACCATTTAAAGCATTTCTATGTTTTTTGTTCCATATTTAGAGCTCTCAAATGTTGTGCAATCAAGTTTTAAATTCCTAGGTCAATTTTTTCTTCATTTCACATTTAATGCTTTTTAAAGACTTTTGGTCTTTGGTGCTTTGCACGACCATTTTGGCCTATTTAAAGGCTTGTATTGGCATGGAAAAGGCAGAACTTTTATGAAAAAAACTTGAGTTTTGTTTAGCCCCATTTGGTGTTAACTTTCTTTCAAATCTTGCTTTAGGTTTGATGTTTAACCGATTCATTGGATTAGCCCCGATCAAGCTAATTCTGGAGTGAGTCGTCTTAGGATCTAG

mRNA sequence

ATGAAGGAAGCTCGAGCAAAATCTGATGTGAATCAAACCATTGATCCATTGCATGTACCTGAAGGAGCAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAAGCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACGGGAAAAGTTGTCTAGTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGAAAATGTTTGATCTCGTTGGTCGACATCCTTTGGCCGACTCTCTAGAGGTGAAATATCTTCAATTTGCTTTACTTTATTTTCTTTCATTTTTTTATCATTTACAAAAAAAAGTTCCGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGGATGATGGAGATGATGAGAGAAGAAAGGGAAGAAAGGAGAGCACAACAACAAAGAGAAGAACGAATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAGGTACAAGAAAGAAACTTAGGAGGAAGAGGAAATGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAAGCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACAGGAACAGTTGTCTAGTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGAAAATCCCCGATCAAGCTAATTCTGGAGTGAGTCGTCTTAGGATCTAG

Coding sequence (CDS)

ATGAAGGAAGCTCGAGCAAAATCTGATGTGAATCAAACCATTGATCCATTGCATGTACCTGAAGGAGCAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAAGCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACGGGAAAAGTTGTCTAGTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGAAAATGTTTGATCTCGTTGGTCGACATCCTTTGGCCGACTCTCTAGAGGTGAAATATCTTCAATTTGCTTTACTTTATTTTCTTTCATTTTTTTATCATTTACAAAAAAAAGTTCCGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGGATGATGGAGATGATGAGAGAAGAAAGGGAAGAAAGGAGAGCACAACAACAAAGAGAAGAACGAATCTTGCAAGAAGATGAAGGCATGTTTGATTTACAGGTACAAGAAAGAAACTTAGGAGGAAGAGGAAATGCCAAGAAGATTCAAGAGGCTTTCACATTGCATCTCCAAAAGCTCGTGAATGCACAAGGAGAGACCAAGATTTTTGAGCCCAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGGCACAGGAACAGTTGTCTAGTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGAAAATCCCCGATCAAGCTAATTCTGGAGTGAGTCGTCTTAGGATCTAG

Protein sequence

MKEARAKSDVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTEDKKSVQKMFDLVGRHPLADSLEVKYLQFALLYFLSFFYHLQKKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLQVQERNLGGRGNAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDENGVKMAQEQLSSLKDGTEDKKSVQKIPDQANSGVSRLRI
Homology
BLAST of Tan0019280 vs. NCBI nr
Match: TYK02449.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-21
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 0

Query: 9    DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDE 68
            DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E
Sbjct: 1419 DVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEE 1478

Query: 69   NGVKMAREKLSSLKDGTEDKKSVQKM 95
            +GVKMAREKL +L+DGT ++KSVQ +
Sbjct: 1479 HGVKMAREKLCNLEDGTRNEKSVQNL 1504

BLAST of Tan0019280 vs. NCBI nr
Match: TYK08102.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-21
Identity = 63/102 (61.76%), Postives = 75/102 (73.53%), Query Frame = 0

Query: 9   DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDE 68
           DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E
Sbjct: 540 DVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEE 599

Query: 69  NGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHPLADSL 108
           +GVKMAREKL +L+DGT ++K    +   FDL   HPL   L
Sbjct: 600 HGVKMAREKLCNLEDGTGNEKRETIIDSKFDLRVIHPLTKLL 641

BLAST of Tan0019280 vs. NCBI nr
Match: KAA0063387.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 3.4e-21
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = 0

Query: 9   DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDE 68
           DV+   + LHVPEG IT+ KAKKIQEAFT+H+QKL NAQ ETK FE K LYNVS+ SQ+E
Sbjct: 600 DVDSLNNLLHVPEGPITKRKAKKIQEAFTMHVQKLANAQRETKNFELKFLYNVSSASQEE 659

Query: 69  NGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHPLADSL 108
           +GVKMAREKL +L+D TE++K    +   FDL   HPL   L
Sbjct: 660 HGVKMAREKLCNLEDDTENEKRETIIDSKFDLRVIHPLTKLL 701

BLAST of Tan0019280 vs. NCBI nr
Match: KAA0051909.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 7.6e-21
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = 0

Query: 9   DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDE 68
           DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E
Sbjct: 903 DVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEE 962

Query: 69  NGVKMAREKLSSLKDGTEDKKSVQKM 95
           +GVKMAREKL + +DGT ++KSVQ +
Sbjct: 963 HGVKMAREKLCNFEDGTGNEKSVQNL 988

BLAST of Tan0019280 vs. NCBI nr
Match: KAA0067206.1 (hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 1.7e-20
Identity = 58/86 (67.44%), Postives = 69/86 (80.23%), Query Frame = 0

Query: 9   DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDE 68
           DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ E K FEPK LYNVS+ SQ+E
Sbjct: 275 DVDSINNLLHVPEGPITKRKAKKIQEAFTLHVQKLENAQREIKNFEPKFLYNVSSASQEE 334

Query: 69  NGVKMAREKLSSLKDGTEDKKSVQKM 95
           + +KMA EKL SL+DGT D+KSVQ +
Sbjct: 335 HEIKMAWEKLCSLEDGTGDEKSVQNL 360

BLAST of Tan0019280 vs. ExPASy TrEMBL
Match: A0A5D3BWE8 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.4e-22
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 0

Query: 9    DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDE 68
            DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E
Sbjct: 1419 DVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEE 1478

Query: 69   NGVKMAREKLSSLKDGTEDKKSVQKM 95
            +GVKMAREKL +L+DGT ++KSVQ +
Sbjct: 1479 HGVKMAREKLCNLEDGTRNEKSVQNL 1504

BLAST of Tan0019280 vs. ExPASy TrEMBL
Match: A0A5D3C9X5 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002630 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.7e-22
Identity = 63/102 (61.76%), Postives = 75/102 (73.53%), Query Frame = 0

Query: 9   DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDE 68
           DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E
Sbjct: 540 DVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEE 599

Query: 69  NGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHPLADSL 108
           +GVKMAREKL +L+DGT ++K    +   FDL   HPL   L
Sbjct: 600 HGVKMAREKLCNLEDGTGNEKRETIIDSKFDLRVIHPLTKLL 641

BLAST of Tan0019280 vs. ExPASy TrEMBL
Match: A0A5A7V8R2 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold508G00160 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-21
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = 0

Query: 9   DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDE 68
           DV+   + LHVPEG IT+ KAKKIQEAFT+H+QKL NAQ ETK FE K LYNVS+ SQ+E
Sbjct: 600 DVDSLNNLLHVPEGPITKRKAKKIQEAFTMHVQKLANAQRETKNFELKFLYNVSSASQEE 659

Query: 69  NGVKMAREKLSSLKDGTEDKKS---VQKMFDLVGRHPLADSL 108
           +GVKMAREKL +L+D TE++K    +   FDL   HPL   L
Sbjct: 660 HGVKMAREKLCNLEDDTENEKRETIIDSKFDLRVIHPLTKLL 701

BLAST of Tan0019280 vs. ExPASy TrEMBL
Match: A0A5A7UEI2 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003620 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.7e-21
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = 0

Query: 9   DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDE 68
           DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ ETK FE K LYNVS+ SQ+E
Sbjct: 903 DVDSLNNLLHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEE 962

Query: 69  NGVKMAREKLSSLKDGTEDKKSVQKM 95
           +GVKMAREKL + +DGT ++KSVQ +
Sbjct: 963 HGVKMAREKLCNFEDGTGNEKSVQNL 988

BLAST of Tan0019280 vs. ExPASy TrEMBL
Match: A0A5A7VL78 (RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00080 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.2e-21
Identity = 58/86 (67.44%), Postives = 69/86 (80.23%), Query Frame = 0

Query: 9   DVNQTIDPLHVPEGAITRSKAKKIQEAFTLHLQKLVNAQGETKIFEPKILYNVSTTSQDE 68
           DV+   + LHVPEG IT+ KAKKIQEAFTLH+QKL NAQ E K FEPK LYNVS+ SQ+E
Sbjct: 275 DVDSINNLLHVPEGPITKRKAKKIQEAFTLHVQKLENAQREIKNFEPKFLYNVSSASQEE 334

Query: 69  NGVKMAREKLSSLKDGTEDKKSVQKM 95
           + +KMA EKL SL+DGT D+KSVQ +
Sbjct: 335 HEIKMAWEKLCSLEDGTGDEKSVQNL 360

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
TYK02449.11.5e-2168.60F15O4.13 [Cucumis melo var. makuwa][more]
TYK08102.12.0e-2161.76Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0063387.13.4e-2160.78Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0051909.17.6e-2167.44Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0067206.11.7e-2067.44hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5D3BWE87.4e-2268.60F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4... [more]
A0A5D3C9X59.7e-2261.76Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7V8R21.7e-2160.78Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7UEI23.7e-2167.44Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7VL788.2e-2167.44RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 144..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 244..269

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0019280.1Tan0019280.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding