Tan0019255 (gene) Snake gourd v1

Overview
NameTan0019255
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionProtein GL2-INTERACTING REPRESSOR 1
LocationLG05: 59611661 .. 59612270 (-)
RNA-Seq ExpressionTan0019255
SyntenyTan0019255
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTATCACCATTATAAAAACAAGATTTGGTTTGTTCTCTTCTTTGTTGATATCTTCCTTCTCCATTGAAGGGCTCTGAATTATGGGTCGAAGCTTCAACAATTTGAAGTCGGAACTGCAAGATTTGTCATTGTCAGTGTCTAACTCAACGACCGAAGATACTACGATGGTGGCCATGGTGTTATTGGGTTGCACTCGATGCCTCATATACGTCATGTCGTCTAAGTTAGATCCCAAGTGTCCTAAATGCAACGACAATACGTTACTTGATTTCTTCAATTTGGCAGAACAAGCGTCTCGGAGAAATGTTGTCGACATGTCAAACGACGTTGCTAAATGAAGAAGGGGTTTATCGACATGTCGATCATAGTTACCTACCTCATCTTGTTCGTACTCTTTTTTTACTTTTGTGTCTAAATTCCTTTAGCTGCCTTGTTTTCTTCTTCTTTTATTTTTTTTTTCTAATTCATTCTTATTGTAACTATTTGCTATTAGTTTTAATCACGCTATGCCAATTTCAGAGTATATGTTTCTTTTGAAGATATTCTCCATATTTATGAGCATTATGGCTTATTTATTCGAGAAATTATATCAGGTCAATTAATAAGAAT

mRNA sequence

CTTATCACCATTATAAAAACAAGATTTGGTTTGTTCTCTTCTTTGTTGATATCTTCCTTCTCCATTGAAGGGCTCTGAATTATGGGTCGAAGCTTCAACAATTTGAAGTCGGAACTGCAAGATTTGTCATTGTCAGTGTCTAACTCAACGACCGAAGATACTACGATGGTGGCCATGGTGTTATTGGGTTGCACTCGATGCCTCATATACGTCATGTCGTCTAAGTTAGATCCCAAGTGTCCTAAATGCAACGACAATACGTTACTTGATTTCTTCAATTTGGCAGAACAAGCGTCTCGGAGAAATGTTGTCGACATGTCAAACGACGTTGCTAAATGAAGAAGGGGTTTATCGACATGTCGATCATAGTTACCTACCTCATCTTGTTCGTACTCTTTTTTTACTTTTGTGTCTAAATTCCTTTAGCTGCCTTGTTTTCTTCTTCTTTTATTTTTTTTTTCTAATTCATTCTTATTGTAACTATTTGCTATTAGTTTTAATCACGCTATGCCAATTTCAGAGTATATGTTTCTTTTGAAGATATTCTCCATATTTATGAGCATTATGGCTTATTTATTCGAGAAATTATATCAGGTCAATTAATAAGAAT

Coding sequence (CDS)

ATGGGTCGAAGCTTCAACAATTTGAAGTCGGAACTGCAAGATTTGTCATTGTCAGTGTCTAACTCAACGACCGAAGATACTACGATGGTGGCCATGGTGTTATTGGGTTGCACTCGATGCCTCATATACGTCATGTCGTCTAAGTTAGATCCCAAGTGTCCTAAATGCAACGACAATACGTTACTTGATTTCTTCAATTTGGCAGAACAAGCGTCTCGGAGAAATGTTGTCGACATGTCAAACGACGTTGCTAAATGA

Protein sequence

MGRSFNNLKSELQDLSLSVSNSTTEDTTMVAMVLLGCTRCLIYVMSSKLDPKCPKCNDNTLLDFFNLAEQASRRNVVDMSNDVAK
Homology
BLAST of Tan0019255 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.4e-09
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 8   LKSELQDLSLSVSNSTTEDTTMVAMVLLGCTRCLIYVMSSKLDPKCPKCNDNTLLDFFNL 67
           + SE+     SV  ST+ +TT  +MVL+GC RCL+YVM S+ DPKCPKC    LLDF  L
Sbjct: 44  VSSEMNQDEPSVRYSTSPETT--SMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF--L 103

Query: 68  AEQASRRN 76
            E A+  N
Sbjct: 104 HENATNAN 107

BLAST of Tan0019255 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 0

Query: 3  RSFNNLKSELQDLSLSVSNSTTEDTTMVAMVLLGCTRCLIYVMSSKLDPKCPKCNDNTLL 62
          RS N   +      +S   +  E+ T+ +MVL+GC RCL+YVM S  DPKCPKC    LL
Sbjct: 31 RSPNRSNTTSPSSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLL 90

Query: 63 DF 65
          DF
Sbjct: 91 DF 92

BLAST of Tan0019255 vs. ExPASy Swiss-Prot
Match: Q9FMS4 (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.8e-04
Identity = 17/35 (48.57%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 31 AMVLLGCTRCLIYVMSS-KLDPKCPKCNDNTLLDF 65
          +MV++GC  C++Y+++S + DP+CP+CN + LLDF
Sbjct: 48 SMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDF 82

BLAST of Tan0019255 vs. NCBI nr
Match: KAG6583700.1 (hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019351.1 hypothetical protein SDJN02_18311 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 20 SNSTTEDTTMVAMVLLGCTRCLIYVMSSKLDPKCPKCNDNTLLDFFNLAEQASRRNVVDM 79
          S+S TED T   MVLLGCT+CL+YVMSSK D KCPKCN+ TLLD  NLA QAS++N+VDM
Sbjct: 18 SSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLANQASKKNLVDM 77

Query: 80 SNDVAK 86
          S DVAK
Sbjct: 78 SIDVAK 83

BLAST of Tan0019255 vs. NCBI nr
Match: XP_027347906.1 (uncharacterized protein LOC113859298 [Abrus precatorius])

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-07
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 12  LQDLSLSVSNSTTEDTTMVAMVLLGCTRCLIYVMSSKLDPKCPKCNDNTLLDFFNLAEQA 71
           +Q L  S  +S  E+T   AM+L+GC RCL+YVM S++DPKCPKC    LLDF N  E  
Sbjct: 41  IQSLESSCVSSEAEETR--AMLLVGCPRCLMYVMLSEIDPKCPKCKSTVLLDFLNNEENT 100

Query: 72  SRRN 76
            + N
Sbjct: 101 KKTN 102

BLAST of Tan0019255 vs. NCBI nr
Match: XP_039002217.1 (uncharacterized protein LOC120128632 [Hibiscus syriacus] >KAE8702514.1 hypothetical protein F3Y22_tig00110482pilonHSYRG00220 [Hibiscus syriacus])

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-07
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 14  DLSLSVSNSTTEDTTMVAMVLLGCTRCLIYVMSSKLDPKCPKCNDNTLLDFFN 67
           D++ +V  +++ D T   MVL+GC RCLIYVM S+ DPKCPKCN   LLDF N
Sbjct: 49  DMTDAVGYASSPDATSFPMVLVGCPRCLIYVMLSEDDPKCPKCNSTVLLDFLN 101

BLAST of Tan0019255 vs. NCBI nr
Match: XP_006592350.1 (protein GL2-INTERACTING REPRESSOR 1 [Glycine max] >XP_028194134.1 uncharacterized protein LOC114379647 [Glycine soja] >KAG4967526.1 hypothetical protein JHK87_033177 [Glycine soja] >KAG4980002.1 hypothetical protein JHK85_033960 [Glycine max] >KAG4985636.1 hypothetical protein JHK86_033327 [Glycine max] >KAG5118818.1 hypothetical protein JHK82_033238 [Glycine max] >KAG5139809.1 hypothetical protein JHK84_033577 [Glycine max])

HSP 1 Score: 63.9 bits (154), Expect = 7.5e-07
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 12  LQDLSLSVSNSTTEDTTMVAMVLLGCTRCLIYVMSSKLDPKCPKCNDNTLLDFFNLAEQA 71
           +Q L  S  +S  E+T   AM+L+GC RCL+YVM S++DPKCPKC    LLDF N  E  
Sbjct: 45  VQSLESSCVSSEAEETR--AMLLVGCPRCLLYVMLSEVDPKCPKCKSTVLLDFLNNEENN 104

Query: 72  SRRN 76
           ++++
Sbjct: 105 TKKS 106

BLAST of Tan0019255 vs. NCBI nr
Match: XP_004506211.1 (uncharacterized protein LOC101502581 [Cicer arietinum])

HSP 1 Score: 63.5 bits (153), Expect = 9.8e-07
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 31  AMVLLGCTRCLIYVMSSKLDPKCPKCNDNTLLDFFNLAEQASRRNVV 78
           AM+L+GCTRCL+YVM  ++DPKCPKC    LLDF N  E  S++  +
Sbjct: 62  AMLLVGCTRCLMYVMLPEIDPKCPKCKSTVLLDFLNNEENTSKKTSI 108

BLAST of Tan0019255 vs. ExPASy TrEMBL
Match: A0A6A3AD94 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110482pilonHSYRG00220 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 14  DLSLSVSNSTTEDTTMVAMVLLGCTRCLIYVMSSKLDPKCPKCNDNTLLDFFN 67
           D++ +V  +++ D T   MVL+GC RCLIYVM S+ DPKCPKCN   LLDF N
Sbjct: 49  DMTDAVGYASSPDATSFPMVLVGCPRCLIYVMLSEDDPKCPKCNSTVLLDFLN 101

BLAST of Tan0019255 vs. ExPASy TrEMBL
Match: I1LRJ7 (Uncharacterized protein OS=Glycine max OX=3847 GN=102667525 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.6e-07
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 12  LQDLSLSVSNSTTEDTTMVAMVLLGCTRCLIYVMSSKLDPKCPKCNDNTLLDFFNLAEQA 71
           +Q L  S  +S  E+T   AM+L+GC RCL+YVM S++DPKCPKC    LLDF N  E  
Sbjct: 45  VQSLESSCVSSEAEETR--AMLLVGCPRCLLYVMLSEVDPKCPKCKSTVLLDFLNNEENN 104

Query: 72  SRRN 76
           ++++
Sbjct: 105 TKKS 106

BLAST of Tan0019255 vs. ExPASy TrEMBL
Match: A0A445HN07 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_033813 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.6e-07
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 12  LQDLSLSVSNSTTEDTTMVAMVLLGCTRCLIYVMSSKLDPKCPKCNDNTLLDFFNLAEQA 71
           +Q L  S  +S  E+T   AM+L+GC RCL+YVM S++DPKCPKC    LLDF N  E  
Sbjct: 45  VQSLESSCVSSEAEETR--AMLLVGCPRCLLYVMLSEVDPKCPKCKSTVLLDFLNNEENN 104

Query: 72  SRRN 76
           ++++
Sbjct: 105 TKKS 106

BLAST of Tan0019255 vs. ExPASy TrEMBL
Match: A0A1S2YKZ1 (uncharacterized protein LOC101502581 OS=Cicer arietinum OX=3827 GN=LOC101502581 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.8e-07
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 31  AMVLLGCTRCLIYVMSSKLDPKCPKCNDNTLLDFFNLAEQASRRNVV 78
           AM+L+GCTRCL+YVM  ++DPKCPKC    LLDF N  E  S++  +
Sbjct: 62  AMLLVGCTRCLMYVMLPEIDPKCPKCKSTVLLDFLNNEENTSKKTSI 108

BLAST of Tan0019255 vs. ExPASy TrEMBL
Match: D7LZ58 (Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_487435 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.2e-07
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 0

Query: 8   LKSELQDLSLSVSNSTTEDTTMVAMVLLGCTRCLIYVMSSKLDPKCPKCNDNTLLDFFNL 67
           + SE+     SV  ST+ +TT  +MVL+GC RCL+YVM S+ DPKCPKC    LLDF  L
Sbjct: 44  VSSEMNQDEPSVRYSTSPETT--SMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF--L 103

Query: 68  AEQASRRNVVDMSN 82
            E AS  N    S+
Sbjct: 104 HENASNANAAAASS 113

BLAST of Tan0019255 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 4.5e-10
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 8   LKSELQDLSLSVSNSTTEDTTMVAMVLLGCTRCLIYVMSSKLDPKCPKCNDNTLLDFFNL 67
           + SE+     SV  ST+ +TT  +MVL+GC RCL+YVM S+ DPKCPKC    LLDF  L
Sbjct: 44  VSSEMNQDEPSVRYSTSPETT--SMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF--L 103

Query: 68  AEQASRRN 76
            E A+  N
Sbjct: 104 HENATNAN 107

BLAST of Tan0019255 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 8.6e-09
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 0

Query: 3  RSFNNLKSELQDLSLSVSNSTTEDTTMVAMVLLGCTRCLIYVMSSKLDPKCPKCNDNTLL 62
          RS N   +      +S   +  E+ T+ +MVL+GC RCL+YVM S  DPKCPKC    LL
Sbjct: 31 RSPNRSNTTSPSSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLL 90

Query: 63 DF 65
          DF
Sbjct: 91 DF 92

BLAST of Tan0019255 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 17/35 (48.57%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 31 AMVLLGCTRCLIYVMSS-KLDPKCPKCNDNTLLDF 65
          +MV++GC  C++Y+++S + DP+CP+CN + LLDF
Sbjct: 48 SMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDF 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FNI16.4e-0951.47Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1... [more]
Q9SRN41.2e-0746.77Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1... [more]
Q9FMS42.8e-0448.57Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 G... [more]
Match NameE-valueIdentityDescription
KAG6583700.11.4e-1671.21hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_027347906.12.6e-0750.00uncharacterized protein LOC113859298 [Abrus precatorius][more]
XP_039002217.14.4e-0756.60uncharacterized protein LOC120128632 [Hibiscus syriacus] >KAE8702514.1 hypotheti... [more]
XP_006592350.17.5e-0748.44protein GL2-INTERACTING REPRESSOR 1 [Glycine max] >XP_028194134.1 uncharacterize... [more]
XP_004506211.19.8e-0755.32uncharacterized protein LOC101502581 [Cicer arietinum][more]
Match NameE-valueIdentityDescription
A0A6A3AD942.1e-0756.60Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110482pilon... [more]
I1LRJ73.6e-0748.44Uncharacterized protein OS=Glycine max OX=3847 GN=102667525 PE=4 SV=1[more]
A0A445HN073.6e-0748.44Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_033813 PE=4 SV=1[more]
A0A1S2YKZ14.8e-0755.32uncharacterized protein LOC101502581 OS=Cicer arietinum OX=3827 GN=LOC101502581 ... [more]
D7LZ586.2e-0750.00Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRA... [more]
Match NameE-valueIdentityDescription
AT5G06270.14.5e-1051.47unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G11600.18.6e-0946.77unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT5G22270.12.0e-0548.57unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33177PUTATIVE-RELATEDcoord: 17..74
NoneNo IPR availablePANTHERPTHR33177:SF51GB|AAF02129.1coord: 17..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0019255.1Tan0019255.1mRNA