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Tan0019249 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAATCAATATACTTCTAATAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAATCAATATACTTCTAATAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA MDGIKYAVFTDKSIRLLGKINILLIRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT Homology
BLAST of Tan0019249 vs. ExPASy Swiss-Prot
Match: Q7FNR4 (50S ribosomal protein L23, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl23-A PE=3 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 5.1e-18 Identity = 52/93 (55.91%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of Tan0019249 vs. ExPASy Swiss-Prot
Match: A0A378 (50S ribosomal protein L23, chloroplastic OS=Coffea arabica OX=13443 GN=rpl23-A PE=3 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 5.1e-18 Identity = 52/93 (55.91%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of Tan0019249 vs. ExPASy Swiss-Prot
Match: Q4VZK6 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A PE=3 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 5.1e-18 Identity = 52/93 (55.91%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of Tan0019249 vs. ExPASy Swiss-Prot
Match: Q3C1N5 (50S ribosomal protein L23, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=rpl23-A PE=3 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 5.1e-18 Identity = 52/93 (55.91%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of Tan0019249 vs. ExPASy Swiss-Prot
Match: Q33BY9 (50S ribosomal protein L23, chloroplastic OS=Nicotiana tomentosiformis OX=4098 GN=rpl23-A PE=3 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 5.1e-18 Identity = 52/93 (55.91%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of Tan0019249 vs. NCBI nr
Match: KAG5626516.1 (hypothetical protein H5410_011734 [Solanum commersonii]) HSP 1 Score: 98.6 bits (244), Expect = 1.9e-17 Identity = 52/66 (78.79%), Postives = 52/66 (78.79%), Query Frame = 0
BLAST of Tan0019249 vs. NCBI nr
Match: ATL61329.1 (ribosomal protein L23 [Rubia horrida]) HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15 Identity = 53/93 (56.99%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of Tan0019249 vs. NCBI nr
Match: YP_009700223.1 (ribosomal protein L23 [Justicia flava] >YP_009700244.1 ribosomal protein L23 [Justicia flava] >YP_009776779.1 ribosomal protein L23 [Justicia adhatoda] >YP_009776800.1 ribosomal protein L23 [Justicia adhatoda] >YP_009937878.1 ribosomal protein L23 [Salvia petrophila] >YP_009937899.1 ribosomal protein L23 [Salvia petrophila] >YP_010122054.1 ribosomal protein L23 [Peristrophe japonica] >YP_010122076.1 ribosomal protein L23 [Peristrophe japonica] >QEX96186.1 ribosomal protein L23 [Rungia pectinata] >QHB74547.1 ribosomal protein L23 [Dicliptera acuminata] >QHB74633.1 ribosomal protein L23 [Dicliptera peruviana] >QHB74719.1 ribosomal protein L23 [Dicliptera montana] >QHB74890.1 ribosomal protein L23 [Dicliptera mucronata]) HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15 Identity = 53/93 (56.99%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of Tan0019249 vs. NCBI nr
Match: YP_009633459.1 (ribosomal protein L23 [Noronhia brevituba] >YP_009633481.1 ribosomal protein L23 [Noronhia brevituba] >QBS48375.1 ribosomal protein L23 [Noronhia brevituba] >QBS48376.1 ribosomal protein L23 [Noronhia brevituba]) HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15 Identity = 53/93 (56.99%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of Tan0019249 vs. NCBI nr
Match: YP_010147081.1 (ribosomal protein L23 [Neopicrorhiza scrophulariiflora] >YP_010147098.1 ribosomal protein L23 [Neopicrorhiza scrophulariiflora] >QQP21595.1 ribosomal protein L23 [Neopicrorhiza scrophulariiflora] >QQP21596.1 ribosomal protein L23 [Neopicrorhiza scrophulariiflora]) HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15 Identity = 52/93 (55.91%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of Tan0019249 vs. ExPASy TrEMBL
Match: A0A6B9M4G0 (50S ribosomal protein L23, chloroplastic OS=Dicliptera peruviana OX=2565898 GN=rpl23 PE=3 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 8.5e-16 Identity = 53/93 (56.99%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of Tan0019249 vs. ExPASy TrEMBL
Match: A0A5J6NHS1 (50S ribosomal protein L23, chloroplastic OS=Rungia pectinata OX=1205775 GN=rpl23 PE=3 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 8.5e-16 Identity = 53/93 (56.99%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of Tan0019249 vs. ExPASy TrEMBL
Match: A0A7H1KLF4 (50S ribosomal protein L23, chloroplastic OS=Salvia petrophila OX=2263212 GN=rpl23 PE=3 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 8.5e-16 Identity = 53/93 (56.99%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of Tan0019249 vs. ExPASy TrEMBL
Match: A0A5J6BWK0 (50S ribosomal protein L23, chloroplastic OS=Justicia flava OX=2038526 GN=rpl23 PE=3 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 8.5e-16 Identity = 53/93 (56.99%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of Tan0019249 vs. ExPASy TrEMBL
Match: A0A6B9M825 (50S ribosomal protein L23, chloroplastic OS=Dicliptera mucronata OX=2565901 GN=rpl23 PE=3 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 8.5e-16 Identity = 53/93 (56.99%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of Tan0019249 vs. TAIR 10
Match: ATCG00840.1 (ribosomal protein L23.1 ) HSP 1 Score: 89.7 bits (221), Expect = 8.1e-19 Identity = 51/93 (54.84%), Postives = 56/93 (60.22%), Query Frame = 0
BLAST of Tan0019249 vs. TAIR 10
Match: ATCG01300.1 (ribosomal protein L23 ) HSP 1 Score: 89.7 bits (221), Expect = 8.1e-19 Identity = 51/93 (54.84%), Postives = 56/93 (60.22%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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